RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 PICK1Q9NRD5 415 aa23.08■■□□□ 1.29
CLN3-218ENST00000565688 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.08■■□□□ 1.29
CLN3-218ENST00000565688 PHF20L1A8MW92 1017 aa23.07■■□□□ 1.28
CLN3-218ENST00000565688 PDHXO00330 501 aa23.07■■□□□ 1.28
CLN3-218ENST00000565688 LDHCP07864 332 aa23.07■■□□□ 1.28
CLN3-218ENST00000565688 UQCRFS1P1P0C7P4 283 aa23.07■■□□□ 1.28
CLN3-218ENST00000565688 HNRNPUQ00839 825 aaKnown RBP eCLIP23.07■■□□□ 1.28
CLN3-218ENST00000565688 SLC9C1Q4G0N8 1177 aa23.07■■□□□ 1.28
CLN3-218ENST00000565688 SCYL3Q8IZE3 742 aa23.07■■□□□ 1.28
CLN3-218ENST00000565688 DOCK2Q92608 1830 aa23.07■■□□□ 1.28
CLN3-218ENST00000565688 POTEFA5A3E0 1075 aa23.06■■□□□ 1.28
CLN3-218ENST00000565688 NPM3O75607 178 aaKnown RBP23.06■■□□□ 1.28
CLN3-218ENST00000565688 C17orf99Q6UX52 265 aa23.06■■□□□ 1.28
CLN3-218ENST00000565688 SH3BP5LQ7L8J4 393 aa23.06■■□□□ 1.28
CLN3-218ENST00000565688 ZNF333Q96JL9 665 aa23.06■■□□□ 1.28
CLN3-218ENST00000565688 PTCH2Q9Y6C5 1203 aa23.06■■□□□ 1.28
CLN3-218ENST00000565688 CTNND1O60716 968 aaKnown RBP23.05■■□□□ 1.28
CLN3-218ENST00000565688 PRMT2P55345 433 aa23.05■■□□□ 1.28
CLN3-218ENST00000565688 PICALMQ13492 652 aa23.05■■□□□ 1.28
CLN3-218ENST00000565688 POLA2Q14181 598 aa23.05■■□□□ 1.28
CLN3-218ENST00000565688 FTSJ3Q8IY81 847 aaKnown RBP23.05■■□□□ 1.28
CLN3-218ENST00000565688 TMEM106CQ9BVX2 250 aa23.05■■□□□ 1.28
CLN3-218ENST00000565688 GPR108Q9NPR9 543 aa23.05■■□□□ 1.28
CLN3-218ENST00000565688 DDX4Q9NQI0 724 aaKnown RBP23.05■■□□□ 1.28
CLN3-218ENST00000565688 RBBP6Q7Z6E9 1792 aaKnown RBP23.04■■□□□ 1.28
CLN3-218ENST00000565688 DDTLA6NHG4 134 aaPredicted RBP23.04■■□□□ 1.28
CLN3-218ENST00000565688 PTPRAP18433 802 aa23.04■■□□□ 1.28
CLN3-218ENST00000565688 RHBDL3P58872 404 aa23.04■■□□□ 1.28
CLN3-218ENST00000565688 MOGSQ13724 837 aa23.04■■□□□ 1.28
CLN3-218ENST00000565688 PI16Q6UXB8 463 aa23.04■■□□□ 1.28
CLN3-218ENST00000565688 FASTKD5Q7L8L6 764 aaKnown RBP23.04■■□□□ 1.28
CLN3-218ENST00000565688 SSH3Q8TE77 659 aa23.04■■□□□ 1.28
CLN3-218ENST00000565688 ZNF384Q8TF68 577 aa23.04■■□□□ 1.28
CLN3-218ENST00000565688 NSUN4Q96CB9 384 aaKnown RBP23.04■■□□□ 1.28
CLN3-218ENST00000565688 PARK7Q99497 189 aaKnown RBP23.04■■□□□ 1.28
CLN3-218ENST00000565688 RAI14Q9P0K7 980 aa23.04■■□□□ 1.28
CLN3-218ENST00000565688 ZHX2Q9Y6X8 837 aa23.04■■□□□ 1.28
CLN3-218ENST00000565688 ATP8B2P98198 1209 aa23.03■■□□□ 1.28
CLN3-218ENST00000565688 TBC1D9Q6ZT07 1266 aa23.03■■□□□ 1.28
CLN3-218ENST00000565688 ARHGAP39Q9C0H5 1083 aa23.03■■□□□ 1.28
CLN3-218ENST00000565688 CPA4Q9UI42 421 aa23.03■■□□□ 1.28
CLN3-218ENST00000565688 ADGRA2Q96PE1 1338 aa23.03■■□□□ 1.28
CLN3-218ENST00000565688 KIAA0100Q14667 2235 aaKnown RBP23.02■■□□□ 1.28
CLN3-218ENST00000565688 A0A0G2JLL6 359 aaPredicted RBP23.02■■□□□ 1.28
CLN3-218ENST00000565688 TBC1D12O60347 775 aa23.02■■□□□ 1.28
CLN3-218ENST00000565688 MCAMP43121 646 aa23.02■■□□□ 1.28
CLN3-218ENST00000565688 OS9Q13438 667 aaPredicted RBP23.02■■□□□ 1.28
CLN3-218ENST00000565688 PRRT2Q7Z6L0 340 aaPredicted RBP23.02■■□□□ 1.28
CLN3-218ENST00000565688 MIER1Q8N108 512 aa23.02■■□□□ 1.28
CLN3-218ENST00000565688 LRP2BPQ9P2M1 347 aa23.02■■□□□ 1.28
CLN3-218ENST00000565688 HOXD10P28358 340 aa23.01■■□□□ 1.27
CLN3-218ENST00000565688 TNNI3KQ59H18 835 aa23.01■■□□□ 1.27
CLN3-218ENST00000565688 CCDC158Q5M9N0 1113 aa23.01■■□□□ 1.27
CLN3-218ENST00000565688 GPAT2Q6NUI2 795 aa23.01■■□□□ 1.27
CLN3-218ENST00000565688 AFG3L2Q9Y4W6 797 aa23.01■■□□□ 1.27
CLN3-218ENST00000565688 FPGT-TNNI3KV9GXZ4 949 aa23.01■■□□□ 1.27
CLN3-218ENST00000565688 COL2A1P02458 1487 aaPredicted RBP23■■□□□ 1.27
CLN3-218ENST00000565688 PSMC4P43686 418 aa23■■□□□ 1.27
CLN3-218ENST00000565688 TTC39AQ5SRH9 613 aa23■■□□□ 1.27
CLN3-218ENST00000565688 ITPRIPQ8IWB1 547 aa23■■□□□ 1.27
CLN3-218ENST00000565688 NOL10Q9BSC4 688 aaKnown RBP23■■□□□ 1.27
CLN3-218ENST00000565688 MKI67P46013 3256 aaKnown RBP22.99■■□□□ 1.27
CLN3-218ENST00000565688 SURF6O75683 361 aaKnown RBP22.99■■□□□ 1.27
CLN3-218ENST00000565688 EN2P19622 333 aaPredicted RBP22.99■■□□□ 1.27
CLN3-218ENST00000565688 SLC45A1Q9Y2W3 748 aa22.99■■□□□ 1.27
CLN3-218ENST00000565688 IGSF3O75054 1194 aa22.98■■□□□ 1.27
CLN3-218ENST00000565688 FMNL1O95466 1100 aaPredicted RBP22.98■■□□□ 1.27
CLN3-218ENST00000565688 SLC4A8Q2Y0W8 1093 aa22.98■■□□□ 1.27
CLN3-218ENST00000565688 DIEXFQ68CQ4 756 aaKnown RBP22.98■■□□□ 1.27
CLN3-218ENST00000565688 TRIM47Q96LD4 638 aa22.98■■□□□ 1.27
CLN3-218ENST00000565688 OSBPL5Q9H0X9 879 aaPredicted RBP22.98■■□□□ 1.27
CLN3-218ENST00000565688 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.98■■□□□ 1.27
CLN3-218ENST00000565688 SRRDQ9UH36 339 aa22.98■■□□□ 1.27
CLN3-218ENST00000565688 NOP58Q9Y2X3 529 aaKnown RBP22.98■■□□□ 1.27
CLN3-218ENST00000565688 DOCK1Q14185 1865 aa22.98■■□□□ 1.27
CLN3-218ENST00000565688 BRCA2P51587 3418 aa22.98■■□□□ 1.27
CLN3-218ENST00000565688 ZBTB7BO15156 539 aaPredicted RBP22.97■■□□□ 1.27
CLN3-218ENST00000565688 BAG3O95817 575 aa22.97■■□□□ 1.27
CLN3-218ENST00000565688 PLCG2P16885 1265 aa22.97■■□□□ 1.27
CLN3-218ENST00000565688 NAA16Q6N069 864 aaPredicted RBP22.97■■□□□ 1.27
CLN3-218ENST00000565688 GADL1Q6ZQY3 521 aa22.97■■□□□ 1.27
CLN3-218ENST00000565688 TEX11Q8IYF3 940 aa22.97■■□□□ 1.27
CLN3-218ENST00000565688 ZNF512BQ96KM6 892 aaPredicted RBP22.97■■□□□ 1.27
CLN3-218ENST00000565688 C1orf115Q9H7X2 142 aa22.97■■□□□ 1.27
CLN3-218ENST00000565688 ZSWIM8A7E2V4 1837 aa22.96■■□□□ 1.27
CLN3-218ENST00000565688 TRIM75PA6NK02 468 aa22.96■■□□□ 1.27
CLN3-218ENST00000565688 CYP2C8P10632 490 aa22.96■■□□□ 1.27
CLN3-218ENST00000565688 BCRP11274 1271 aa22.96■■□□□ 1.27
CLN3-218ENST00000565688 SH3TC2Q8TF17 1288 aa22.96■■□□□ 1.27
CLN3-218ENST00000565688 DBNDD2Q9BQY9 259 aa22.96■■□□□ 1.27
CLN3-218ENST00000565688 SNRKQ9NRH2 765 aa22.96■■□□□ 1.27
CLN3-218ENST00000565688 SLURP2P0DP57 97 aa22.95■■□□□ 1.26
CLN3-218ENST00000565688 RLBP1P12271 317 aa22.95■■□□□ 1.26
CLN3-218ENST00000565688 OSBPP22059 807 aa22.95■■□□□ 1.26
CLN3-218ENST00000565688 CTGFP29279 349 aa22.95■■□□□ 1.26
CLN3-218ENST00000565688 FCGRTP55899 365 aa22.95■■□□□ 1.26
CLN3-218ENST00000565688 TBC1D2Q9BYX2 928 aa22.95■■□□□ 1.26
CLN3-218ENST00000565688 HERC5Q9UII4 1024 aaKnown RBP22.95■■□□□ 1.26
CLN3-218ENST00000565688 ZBED9Q6R2W3 1325 aa22.94■■□□□ 1.26
CLN3-218ENST00000565688 ECM2O94769 699 aaPredicted RBP22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms