RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 G3BP1Q13283 466 aaKnown RBP eCLIP19.45■□□□□ 0.7
CLK3-211ENST00000563297 KIF22Q14807 665 aa19.45■□□□□ 0.7
CLK3-211ENST00000563297 NBPF11Q86T75 865 aa19.45■□□□□ 0.7
CLK3-211ENST00000563297 ZSCAN29Q8IWY8 852 aaPredicted RBP19.45■□□□□ 0.7
CLK3-211ENST00000563297 ZNF333Q96JL9 665 aa19.45■□□□□ 0.7
CLK3-211ENST00000563297 RFX7Q2KHR2 1363 aa19.44■□□□□ 0.7
CLK3-211ENST00000563297 CXCL11O14625 94 aa19.44■□□□□ 0.7
CLK3-211ENST00000563297 SLURP2P0DP57 97 aa19.44■□□□□ 0.7
CLK3-211ENST00000563297 RHBDL3P58872 404 aa19.44■□□□□ 0.7
CLK3-211ENST00000563297 SLC9C1Q4G0N8 1177 aa19.44■□□□□ 0.7
CLK3-211ENST00000563297 GORABQ5T7V8 394 aa19.44■□□□□ 0.7
CLK3-211ENST00000563297 PI16Q6UXB8 463 aa19.44■□□□□ 0.7
CLK3-211ENST00000563297 TMEM57Q8N5G2 664 aa19.44■□□□□ 0.7
CLK3-211ENST00000563297 SPATA5Q8NB90 893 aa19.44■□□□□ 0.7
CLK3-211ENST00000563297 CPA4Q9UI42 421 aa19.44■□□□□ 0.7
CLK3-211ENST00000563297 MROH7-TTC4A0A0A0MT08 1334 aa19.44■□□□□ 0.7
CLK3-211ENST00000563297 ZSWIM8A7E2V4 1837 aa19.44■□□□□ 0.7
CLK3-211ENST00000563297 RBBP6Q7Z6E9 1792 aaKnown RBP19.43■□□□□ 0.7
CLK3-211ENST00000563297 GNRH1P01148 92 aa19.43■□□□□ 0.7
CLK3-211ENST00000563297 CTGFP29279 349 aa19.43■□□□□ 0.7
CLK3-211ENST00000563297 PICALMQ13492 652 aa19.43■□□□□ 0.7
CLK3-211ENST00000563297 ZKSCAN2Q63HK3 967 aa19.43■□□□□ 0.7
CLK3-211ENST00000563297 GPAT2Q6NUI2 795 aa19.43■□□□□ 0.7
CLK3-211ENST00000563297 TBC1D9Q6ZT07 1266 aa19.43■□□□□ 0.7
CLK3-211ENST00000563297 SCYL3Q8IZE3 742 aa19.43■□□□□ 0.7
CLK3-211ENST00000563297 TMEM106CQ9BVX2 250 aa19.43■□□□□ 0.7
CLK3-211ENST00000563297 ZHX2Q9Y6X8 837 aa19.43■□□□□ 0.7
CLK3-211ENST00000563297 PTPRAP18433 802 aa19.42■□□□□ 0.7
CLK3-211ENST00000563297 ARID4AP29374 1257 aaPredicted RBP19.42■□□□□ 0.7
CLK3-211ENST00000563297 NSUN4Q96CB9 384 aaKnown RBP19.42■□□□□ 0.7
CLK3-211ENST00000563297 ADGRA2Q96PE1 1338 aa19.42■□□□□ 0.7
CLK3-211ENST00000563297 BRCA2P51587 3418 aa19.42■□□□□ 0.7
CLK3-211ENST00000563297 DOCK2Q92608 1830 aa19.41■□□□□ 0.7
CLK3-211ENST00000563297 ECM2O94769 699 aaPredicted RBP19.41■□□□□ 0.7
CLK3-211ENST00000563297 LDHCP07864 332 aa19.41■□□□□ 0.7
CLK3-211ENST00000563297 PSMC4P43686 418 aa19.41■□□□□ 0.7
CLK3-211ENST00000563297 PICK1Q9NRD5 415 aa19.41■□□□□ 0.7
CLK3-211ENST00000563297 AFG3L2Q9Y4W6 797 aa19.41■□□□□ 0.7
CLK3-211ENST00000563297 CTNND1O60716 968 aaKnown RBP19.4■□□□□ 0.7
CLK3-211ENST00000563297 NPM3O75607 178 aaKnown RBP19.4■□□□□ 0.7
CLK3-211ENST00000563297 MCAMP43121 646 aa19.4■□□□□ 0.7
CLK3-211ENST00000563297 PRMT2P55345 433 aa19.4■□□□□ 0.7
CLK3-211ENST00000563297 GSTO1P78417 241 aa19.4■□□□□ 0.7
CLK3-211ENST00000563297 ATP8B2P98198 1209 aa19.4■□□□□ 0.7
CLK3-211ENST00000563297 POLA2Q14181 598 aa19.4■□□□□ 0.7
CLK3-211ENST00000563297 SH3TC2Q8TF17 1288 aa19.4■□□□□ 0.7
CLK3-211ENST00000563297 TRIM47Q96LD4 638 aa19.4■□□□□ 0.7
CLK3-211ENST00000563297 A0A0G2JLL6 359 aaPredicted RBP19.39■□□□□ 0.69
CLK3-211ENST00000563297 TBC1D12O60347 775 aa19.39■□□□□ 0.69
CLK3-211ENST00000563297 MAP4K4O95819 1239 aaPredicted RBP19.39■□□□□ 0.69
CLK3-211ENST00000563297 UQCRFS1P1P0C7P4 283 aa19.39■□□□□ 0.69
CLK3-211ENST00000563297 FASTKD5Q7L8L6 764 aaKnown RBP19.39■□□□□ 0.69
CLK3-211ENST00000563297 PRRT2Q7Z6L0 340 aaPredicted RBP19.39■□□□□ 0.69
CLK3-211ENST00000563297 SSH3Q8TE77 659 aa19.39■□□□□ 0.69
CLK3-211ENST00000563297 GPR108Q9NPR9 543 aa19.39■□□□□ 0.69
CLK3-211ENST00000563297 RAI14Q9P0K7 980 aa19.39■□□□□ 0.69
CLK3-211ENST00000563297 CYP2C8P10632 490 aa19.38■□□□□ 0.69
CLK3-211ENST00000563297 BCRP11274 1271 aa19.38■□□□□ 0.69
CLK3-211ENST00000563297 HNRNPUQ00839 825 aaKnown RBP eCLIP19.38■□□□□ 0.69
CLK3-211ENST00000563297 SLC4A8Q2Y0W8 1093 aa19.38■□□□□ 0.69
CLK3-211ENST00000563297 MIER1Q8N108 512 aa19.38■□□□□ 0.69
CLK3-211ENST00000563297 PARK7Q99497 189 aaKnown RBP19.38■□□□□ 0.69
CLK3-211ENST00000563297 SRRDQ9UH36 339 aa19.38■□□□□ 0.69
CLK3-211ENST00000563297 FMNL1O95466 1100 aaPredicted RBP19.37■□□□□ 0.69
CLK3-211ENST00000563297 MYCP01106 439 aaPredicted RBP19.37■□□□□ 0.69
CLK3-211ENST00000563297 OSBPP22059 807 aa19.37■□□□□ 0.69
CLK3-211ENST00000563297 HOXD10P28358 340 aa19.37■□□□□ 0.69
CLK3-211ENST00000563297 TNNI3KQ59H18 835 aa19.37■□□□□ 0.69
CLK3-211ENST00000563297 LRP2BPQ9P2M1 347 aa19.37■□□□□ 0.69
CLK3-211ENST00000563297 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.37■□□□□ 0.69
CLK3-211ENST00000563297 FPGT-TNNI3KV9GXZ4 949 aa19.37■□□□□ 0.69
CLK3-211ENST00000563297 PTPRFP10586 1907 aa19.36■□□□□ 0.69
CLK3-211ENST00000563297 FAM196BA6NMK8 535 aa19.36■□□□□ 0.69
CLK3-211ENST00000563297 ZBTB7BO15156 539 aaPredicted RBP19.36■□□□□ 0.69
CLK3-211ENST00000563297 GADL1Q6ZQY3 521 aa19.36■□□□□ 0.69
CLK3-211ENST00000563297 DBNDD2Q9BQY9 259 aa19.36■□□□□ 0.69
CLK3-211ENST00000563297 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.36■□□□□ 0.69
CLK3-211ENST00000563297 SNRKQ9NRH2 765 aa19.36■□□□□ 0.69
CLK3-211ENST00000563297 PHIPQ8WWQ0 1821 aa19.36■□□□□ 0.69
CLK3-211ENST00000563297 SURF6O75683 361 aaKnown RBP19.35■□□□□ 0.69
CLK3-211ENST00000563297 CCDC158Q5M9N0 1113 aa19.35■□□□□ 0.69
CLK3-211ENST00000563297 TTC39AQ5SRH9 613 aa19.35■□□□□ 0.69
CLK3-211ENST00000563297 CCDC84Q86UT8 332 aaPredicted RBP19.35■□□□□ 0.69
CLK3-211ENST00000563297 OSBPL5Q9H0X9 879 aaPredicted RBP19.35■□□□□ 0.69
CLK3-211ENST00000563297 C1orf115Q9H7X2 142 aa19.35■□□□□ 0.69
CLK3-211ENST00000563297 SLC45A1Q9Y2W3 748 aa19.35■□□□□ 0.69
CLK3-211ENST00000563297 NOP58Q9Y2X3 529 aaKnown RBP19.35■□□□□ 0.69
CLK3-211ENST00000563297 DOCK1Q14185 1865 aa19.35■□□□□ 0.69
CLK3-211ENST00000563297 TRIM75PA6NK02 468 aa19.34■□□□□ 0.69
CLK3-211ENST00000563297 RLBP1P12271 317 aa19.34■□□□□ 0.69
CLK3-211ENST00000563297 OS9Q13438 667 aaPredicted RBP19.34■□□□□ 0.69
CLK3-211ENST00000563297 TEX11Q8IYF3 940 aa19.34■□□□□ 0.69
CLK3-211ENST00000563297 RAET1EQ8TD07 263 aa19.34■□□□□ 0.69
CLK3-211ENST00000563297 SH3RF3Q8TEJ3 882 aaPredicted RBP19.34■□□□□ 0.69
CLK3-211ENST00000563297 CYP2E1P05181 493 aaPredicted RBP19.33■□□□□ 0.68
CLK3-211ENST00000563297 GRK4P32298 578 aa19.33■□□□□ 0.68
CLK3-211ENST00000563297 RRP1BQ14684 758 aaKnown RBP19.33■□□□□ 0.68
CLK3-211ENST00000563297 MTFR1Q15390 333 aa19.33■□□□□ 0.68
CLK3-211ENST00000563297 FTSJ3Q8IY81 847 aaKnown RBP19.33■□□□□ 0.68
CLK3-211ENST00000563297 ZNF512BQ96KM6 892 aaPredicted RBP19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms