RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 UBE3CQ15386 1083 aa11.84□□□□□ -0.51
CLK3-208ENST00000562626 ZMYM1Q5SVZ6 1142 aa11.84□□□□□ -0.51
CLK3-208ENST00000562626 NBPF12Q5TAG4 269 aaPredicted RBP11.84□□□□□ -0.51
CLK3-208ENST00000562626 CCDC129Q6ZRS4 1044 aa11.84□□□□□ -0.51
CLK3-208ENST00000562626 MOB2Q70IA6 237 aa11.84□□□□□ -0.51
CLK3-208ENST00000562626 APOBEC3FQ8IUX4 373 aaKnown RBP11.84□□□□□ -0.51
CLK3-208ENST00000562626 SULF1Q8IWU6 871 aa11.84□□□□□ -0.51
CLK3-208ENST00000562626 RILPL2Q969X0 211 aa11.84□□□□□ -0.51
CLK3-208ENST00000562626 EVI5LQ96CN4 794 aa11.84□□□□□ -0.51
CLK3-208ENST00000562626 FAM227BQ96M60 508 aa11.84□□□□□ -0.51
CLK3-208ENST00000562626 DEFB129Q9H1M3 183 aa11.84□□□□□ -0.51
CLK3-208ENST00000562626 GREB1LQ9C091 1923 aaPredicted RBP11.84□□□□□ -0.51
CLK3-208ENST00000562626 MAGEB6P1A0A0J9YX57 407 aa11.83□□□□□ -0.52
CLK3-208ENST00000562626 DDTLA6NHG4 134 aaPredicted RBP11.83□□□□□ -0.52
CLK3-208ENST00000562626 FOXP2O15409 715 aa11.83□□□□□ -0.52
CLK3-208ENST00000562626 MYO1BO43795 1136 aa11.83□□□□□ -0.52
CLK3-208ENST00000562626 NMIQ13287 307 aaPredicted RBP11.83□□□□□ -0.52
CLK3-208ENST00000562626 MAPKAPK5Q8IW41 473 aa11.83□□□□□ -0.52
CLK3-208ENST00000562626 SLF2Q8IX21 1173 aa11.83□□□□□ -0.52
CLK3-208ENST00000562626 TEX11Q8IYF3 940 aa11.83□□□□□ -0.52
CLK3-208ENST00000562626 TGFBRAP1Q8WUH2 860 aa11.83□□□□□ -0.52
CLK3-208ENST00000562626 SDR42E1Q8WUS8 393 aa11.83□□□□□ -0.52
CLK3-208ENST00000562626 IDI2Q9BXS1 227 aa11.83□□□□□ -0.52
CLK3-208ENST00000562626 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.83□□□□□ -0.523e-8■□□□□ 10.6
CLK3-208ENST00000562626 ZNF408Q9H9D4 720 aa11.83□□□□□ -0.52
CLK3-208ENST00000562626 MYH4Q9Y623 1939 aa11.83□□□□□ -0.52
CLK3-208ENST00000562626 FLT1P17948 1338 aa11.83□□□□□ -0.52
CLK3-208ENST00000562626 RPAP1Q9BWH6 1393 aaPredicted RBP11.82□□□□□ -0.52
CLK3-208ENST00000562626 SLC4A8Q2Y0W8 1093 aa11.82□□□□□ -0.52
CLK3-208ENST00000562626 FKBP1CQ5VVH2 108 aa11.82□□□□□ -0.52
CLK3-208ENST00000562626 FAM83AQ86UY5 434 aa11.82□□□□□ -0.52
CLK3-208ENST00000562626 APPBP2Q92624 585 aa11.82□□□□□ -0.52
CLK3-208ENST00000562626 MKRN1Q9UHC7 482 aaKnown RBP11.82□□□□□ -0.52
CLK3-208ENST00000562626 GTF3C3Q9Y5Q9 886 aa11.82□□□□□ -0.52
CLK3-208ENST00000562626 COL2A1P02458 1487 aaPredicted RBP11.82□□□□□ -0.52
CLK3-208ENST00000562626 THSD7BQ9C0I4 1608 aa11.82□□□□□ -0.52
CLK3-208ENST00000562626 FAM196BA6NMK8 535 aa11.81□□□□□ -0.52
CLK3-208ENST00000562626 IGSF3O75054 1194 aa11.81□□□□□ -0.52
CLK3-208ENST00000562626 CELF2O95319 508 aaKnown RBP11.81□□□□□ -0.52
CLK3-208ENST00000562626 BAG3O95817 575 aa11.81□□□□□ -0.52
CLK3-208ENST00000562626 PRKG1Q13976 671 aa11.81□□□□□ -0.52
CLK3-208ENST00000562626 ZNF589Q86UQ0 364 aaPredicted RBP11.81□□□□□ -0.52
CLK3-208ENST00000562626 FAM151AQ8WW52 585 aa11.81□□□□□ -0.52
CLK3-208ENST00000562626 STRBPQ96SI9 672 aaKnown RBP11.81□□□□□ -0.52
CLK3-208ENST00000562626 OSBPL5Q9H0X9 879 aaPredicted RBP11.81□□□□□ -0.52
CLK3-208ENST00000562626 TMOD2Q9NZR1 351 aa11.81□□□□□ -0.52
CLK3-208ENST00000562626 SAP30BPQ9UHR5 308 aaKnown RBP11.81□□□□□ -0.52
CLK3-208ENST00000562626 CYP2D7A0A087X1C5 515 aa11.8□□□□□ -0.52
CLK3-208ENST00000562626 GPAA1O43292 621 aa11.8□□□□□ -0.52
CLK3-208ENST00000562626 ENTPD3O75355 529 aa11.8□□□□□ -0.52
CLK3-208ENST00000562626 CYP2D6P10635 497 aa11.8□□□□□ -0.52
CLK3-208ENST00000562626 VPS53Q5VIR6 699 aa11.8□□□□□ -0.52
CLK3-208ENST00000562626 ZSCAN25Q6NSZ9 544 aa11.8□□□□□ -0.52
CLK3-208ENST00000562626 NOL10Q9BSC4 688 aaKnown RBP11.8□□□□□ -0.52
CLK3-208ENST00000562626 EPB41L4AQ9HCS5 686 aaPredicted RBP11.8□□□□□ -0.52
CLK3-208ENST00000562626 GSG1L2A8MUP6 293 aa11.79□□□□□ -0.52
CLK3-208ENST00000562626 NPM3O75607 178 aaKnown RBP11.79□□□□□ -0.52
CLK3-208ENST00000562626 ZFYP08048 801 aaPredicted RBP11.79□□□□□ -0.52
CLK3-208ENST00000562626 TNNI2P48788 182 aa11.79□□□□□ -0.52
CLK3-208ENST00000562626 TNFAIP1Q13829 316 aa11.79□□□□□ -0.52
CLK3-208ENST00000562626 RRP1BQ14684 758 aaKnown RBP11.79□□□□□ -0.52
CLK3-208ENST00000562626 MIGA2Q7L4E1 593 aa11.79□□□□□ -0.52
CLK3-208ENST00000562626 DNAJC18Q9H819 358 aa11.79□□□□□ -0.52
CLK3-208ENST00000562626 DCP1AQ9NPI6 582 aaPredicted RBP11.79□□□□□ -0.52
CLK3-208ENST00000562626 PALD1Q9ULE6 856 aa11.79□□□□□ -0.52
CLK3-208ENST00000562626 PPP2R3BQ9Y5P8 575 aa11.79□□□□□ -0.52
CLK3-208ENST00000562626 PARP14Q460N5 1801 aa11.79□□□□□ -0.52
CLK3-208ENST00000562626 UBE2Q2LH0YL09 131 aa11.78□□□□□ -0.52
CLK3-208ENST00000562626 USP2O75604 605 aaPredicted RBP11.78□□□□□ -0.52
CLK3-208ENST00000562626 PLCG2P16885 1265 aa11.78□□□□□ -0.52
CLK3-208ENST00000562626 CHMLP26374 656 aa11.78□□□□□ -0.52
CLK3-208ENST00000562626 USP5P45974 858 aa11.78□□□□□ -0.52
CLK3-208ENST00000562626 SHROOM1Q2M3G4 852 aaPredicted RBP11.78□□□□□ -0.52
CLK3-208ENST00000562626 BMP2KLQ5H9B9 411 aa11.78□□□□□ -0.52
CLK3-208ENST00000562626 TMED8Q6PL24 325 aaPredicted RBP11.78□□□□□ -0.52
CLK3-208ENST00000562626 CWC27Q6UX04 472 aaKnown RBP11.78□□□□□ -0.52
CLK3-208ENST00000562626 AIDAQ96BJ3 306 aa11.78□□□□□ -0.52
CLK3-208ENST00000562626 GBA2Q9HCG7 927 aaPredicted RBP11.78□□□□□ -0.52
CLK3-208ENST00000562626 SLC4A4Q9Y6R1 1079 aa11.78□□□□□ -0.52
CLK3-208ENST00000562626 TMEM88BA6NKF7 163 aa11.77□□□□□ -0.53
CLK3-208ENST00000562626 PLCD1P51178 756 aa11.77□□□□□ -0.53
CLK3-208ENST00000562626 MLLT1Q03111 559 aaPredicted RBP11.77□□□□□ -0.53
CLK3-208ENST00000562626 CLMNQ96JQ2 1002 aa11.77□□□□□ -0.53
CLK3-208ENST00000562626 CSRNP1Q96S65 589 aa11.77□□□□□ -0.53
CLK3-208ENST00000562626 CRNKL1Q9BZJ0 848 aaKnown RBP11.77□□□□□ -0.53
CLK3-208ENST00000562626 HELLSQ9NRZ9 838 aa11.77□□□□□ -0.53
CLK3-208ENST00000562626 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.77□□□□□ -0.53
CLK3-208ENST00000562626 ANGEL1Q9UNK9 670 aaKnown RBP11.77□□□□□ -0.53
CLK3-208ENST00000562626 LOC285556D6RIA3 1793 aa11.77□□□□□ -0.53
CLK3-208ENST00000562626 PCNTO95613 3336 aa11.76□□□□□ -0.53
CLK3-208ENST00000562626 JAG1P78504 1218 aa11.76□□□□□ -0.53
CLK3-208ENST00000562626 MCMDC2Q4G0Z9 681 aa11.76□□□□□ -0.53
CLK3-208ENST00000562626 SAPCD2Q86UD0 394 aa11.76□□□□□ -0.53
CLK3-208ENST00000562626 ZSCAN29Q8IWY8 852 aaPredicted RBP11.76□□□□□ -0.53
CLK3-208ENST00000562626 SLC44A5Q8NCS7 719 aa11.76□□□□□ -0.53
CLK3-208ENST00000562626 TACC3Q9Y6A5 838 aa11.76□□□□□ -0.53
CLK3-208ENST00000562626 TLL2Q9Y6L7 1015 aa11.76□□□□□ -0.53
CLK3-208ENST00000562626 CCDC171Q6TFL3 1326 aa11.76□□□□□ -0.53
CLK3-208ENST00000562626 PHF20L1A8MW92 1017 aa11.75□□□□□ -0.53
CLK3-208ENST00000562626 INPP5BP32019 993 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms