RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 RAET1EQ8TD07 263 aa23.53■■□□□ 1.36
VPS35-202ENST00000561713 DENND2AQ9ULE3 1009 aa23.53■■□□□ 1.36
VPS35-202ENST00000561713 MAST2Q6P0Q8 1798 aa23.52■■□□□ 1.36
VPS35-202ENST00000561713 PNMA6EA0A0J9YXQ4 647 aa23.52■■□□□ 1.36
VPS35-202ENST00000561713 HOXD10P28358 340 aa23.52■■□□□ 1.36
VPS35-202ENST00000561713 GRK4P32298 578 aa23.52■■□□□ 1.36
VPS35-202ENST00000561713 MTX1Q13505 466 aa23.52■■□□□ 1.36
VPS35-202ENST00000561713 NOL9Q5SY16 702 aaKnown RBP23.52■■□□□ 1.36
VPS35-202ENST00000561713 TMEM57Q8N5G2 664 aa23.52■■□□□ 1.36
VPS35-202ENST00000561713 USP40Q9NVE5 1235 aa23.52■■□□□ 1.36
VPS35-202ENST00000561713 MYPNQ86TC9 1320 aa23.52■■□□□ 1.36
VPS35-202ENST00000561713 SALL1Q9NSC2 1324 aa23.52■■□□□ 1.36
VPS35-202ENST00000561713 TRIOBPQ9H2D6 2365 aa23.51■■□□□ 1.35
VPS35-202ENST00000561713 IPO8O15397 1037 aaKnown RBP23.51■■□□□ 1.35
VPS35-202ENST00000561713 CYP2C8P10632 490 aa23.51■■□□□ 1.35
VPS35-202ENST00000561713 GPAT2Q6NUI2 795 aa23.51■■□□□ 1.35
VPS35-202ENST00000561713 XAGE2Q96GT9 111 aa23.51■■□□□ 1.35
VPS35-202ENST00000561713 DOCK1Q14185 1865 aa23.5■■□□□ 1.35
VPS35-202ENST00000561713 SEMA3EO15041 775 aa23.5■■□□□ 1.35
VPS35-202ENST00000561713 CCL5P13501 91 aa23.5■■□□□ 1.35
VPS35-202ENST00000561713 CHRDL2Q6WN34 429 aa23.5■■□□□ 1.35
VPS35-202ENST00000561713 DPF3Q92784 378 aa23.5■■□□□ 1.35
VPS35-202ENST00000561713 PTPRFP10586 1907 aa23.5■■□□□ 1.35
VPS35-202ENST00000561713 GNAI2P04899 355 aa23.49■■□□□ 1.35
VPS35-202ENST00000561713 BCRP11274 1271 aa23.49■■□□□ 1.35
VPS35-202ENST00000561713 PRKCZQ05513 592 aa23.49■■□□□ 1.35
VPS35-202ENST00000561713 DIEXFQ68CQ4 756 aaKnown RBP23.49■■□□□ 1.35
VPS35-202ENST00000561713 PI16Q6UXB8 463 aa23.49■■□□□ 1.35
VPS35-202ENST00000561713 PARK7Q99497 189 aaKnown RBP23.49■■□□□ 1.35
VPS35-202ENST00000561713 C1orf115Q9H7X2 142 aa23.49■■□□□ 1.35
VPS35-202ENST00000561713 BIN2Q9UBW5 565 aaPredicted RBP23.49■■□□□ 1.35
VPS35-202ENST00000561713 ABCF2Q9UG63 623 aa23.49■■□□□ 1.35
VPS35-202ENST00000561713 RFX7Q2KHR2 1363 aa23.49■■□□□ 1.35
VPS35-202ENST00000561713 CDK5RAP2Q96SN8 1893 aa23.48■■□□□ 1.35
VPS35-202ENST00000561713 PHF20L1A8MW92 1017 aa23.48■■□□□ 1.35
VPS35-202ENST00000561713 CXCL11O14625 94 aa23.48■■□□□ 1.35
VPS35-202ENST00000561713 GJA8P48165 433 aa23.48■■□□□ 1.35
VPS35-202ENST00000561713 DZIP1Q86YF9 867 aaKnown RBP23.48■■□□□ 1.35
VPS35-202ENST00000561713 NKX2-3Q8TAU0 364 aa23.48■■□□□ 1.35
VPS35-202ENST00000561713 RNF208Q9H0X6 261 aa23.48■■□□□ 1.35
VPS35-202ENST00000561713 ATRNL1Q5VV63 1379 aa23.48■■□□□ 1.35
VPS35-202ENST00000561713 ATAD5Q96QE3 1844 aa23.47■■□□□ 1.35
VPS35-202ENST00000561713 GJB1P08034 283 aa23.47■■□□□ 1.35
VPS35-202ENST00000561713 ZKSCAN2Q63HK3 967 aa23.47■■□□□ 1.35
VPS35-202ENST00000561713 UBE2Q1Q7Z7E8 422 aa23.47■■□□□ 1.35
VPS35-202ENST00000561713 NEUROD6Q96NK8 337 aa23.47■■□□□ 1.35
VPS35-202ENST00000561713 GABRQQ9UN88 632 aa23.47■■□□□ 1.35
VPS35-202ENST00000561713 ZHX2Q9Y6X8 837 aa23.47■■□□□ 1.35
VPS35-202ENST00000561713 PHIPQ8WWQ0 1821 aa23.47■■□□□ 1.35
VPS35-202ENST00000561713 GAKO14976 1311 aa23.46■■□□□ 1.35
VPS35-202ENST00000561713 RGS3P49796 1198 aa23.46■■□□□ 1.35
VPS35-202ENST00000561713 FCGRTP55899 365 aa23.46■■□□□ 1.35
VPS35-202ENST00000561713 RBM27Q9P2N5 1060 aaKnown RBP23.46■■□□□ 1.35
VPS35-202ENST00000561713 A0A0G2JLL6 359 aaPredicted RBP23.45■■□□□ 1.34
VPS35-202ENST00000561713 SLURP2P0DP57 97 aa23.45■■□□□ 1.34
VPS35-202ENST00000561713 PTPRAP18433 802 aa23.45■■□□□ 1.34
VPS35-202ENST00000561713 MVPQ14764 893 aaKnown RBP23.45■■□□□ 1.34
VPS35-202ENST00000561713 SH3BP5LQ7L8J4 393 aa23.45■■□□□ 1.34
VPS35-202ENST00000561713 PRRT2Q7Z6L0 340 aaPredicted RBP23.45■■□□□ 1.34
VPS35-202ENST00000561713 SCYL3Q8IZE3 742 aa23.45■■□□□ 1.34
VPS35-202ENST00000561713 AKAP2Q9Y2D5 859 aa23.45■■□□□ 1.34
VPS35-202ENST00000561713 RLBP1P12271 317 aa23.44■■□□□ 1.34
VPS35-202ENST00000561713 UBXN2AP68543 259 aa23.44■■□□□ 1.34
VPS35-202ENST00000561713 FASTKD5Q7L8L6 764 aaKnown RBP23.44■■□□□ 1.34
VPS35-202ENST00000561713 ZGPATQ8N5A5 531 aaKnown RBP23.44■■□□□ 1.34
VPS35-202ENST00000561713 IDI2Q9BXS1 227 aa23.44■■□□□ 1.34
VPS35-202ENST00000561713 PICK1Q9NRD5 415 aa23.44■■□□□ 1.34
VPS35-202ENST00000561713 AFG3L2Q9Y4W6 797 aa23.44■■□□□ 1.34
VPS35-202ENST00000561713 MROH7-TTC4A0A0A0MT08 1334 aa23.43■■□□□ 1.34
VPS35-202ENST00000561713 PDS5AQ29RF7 1337 aaKnown RBP23.43■■□□□ 1.34
VPS35-202ENST00000561713 ENTPD3O75355 529 aa23.43■■□□□ 1.34
VPS35-202ENST00000561713 BTDP43251 543 aa23.43■■□□□ 1.34
VPS35-202ENST00000561713 GADL1Q6ZQY3 521 aa23.43■■□□□ 1.34
VPS35-202ENST00000561713 SLAIN1Q8ND83 568 aa23.43■■□□□ 1.34
VPS35-202ENST00000561713 ZNF384Q8TF68 577 aa23.43■■□□□ 1.34
VPS35-202ENST00000561713 UNC93B1Q9H1C4 597 aa23.43■■□□□ 1.34
VPS35-202ENST00000561713 HMG20BQ9P0W2 317 aa23.43■■□□□ 1.34
VPS35-202ENST00000561713 MGAMO43451 1857 aa23.43■■□□□ 1.34
VPS35-202ENST00000561713 SIPA1L1O43166 1804 aa23.43■■□□□ 1.34
VPS35-202ENST00000561713 PICALMQ13492 652 aa23.42■■□□□ 1.34
VPS35-202ENST00000561713 GORABQ5T7V8 394 aa23.42■■□□□ 1.34
VPS35-202ENST00000561713 TBC1D9Q6ZT07 1266 aa23.42■■□□□ 1.34
VPS35-202ENST00000561713 ITPRIPQ8IWB1 547 aa23.42■■□□□ 1.34
VPS35-202ENST00000561713 ZSCAN29Q8IWY8 852 aaPredicted RBP23.42■■□□□ 1.34
VPS35-202ENST00000561713 FTSJ3Q8IY81 847 aaKnown RBP23.42■■□□□ 1.34
VPS35-202ENST00000561713 U2AF1L4Q8WU68 220 aaKnown RBP23.42■■□□□ 1.34
VPS35-202ENST00000561713 HTATIP2Q9BUP3 242 aa23.42■■□□□ 1.34
VPS35-202ENST00000561713 DDX4Q9NQI0 724 aaKnown RBP23.42■■□□□ 1.34
VPS35-202ENST00000561713 FOCADQ5VW36 1801 aa23.42■■□□□ 1.34
VPS35-202ENST00000561713 DDTLA6NHG4 134 aaPredicted RBP23.41■■□□□ 1.34
VPS35-202ENST00000561713 ADCY3O60266 1144 aa23.41■■□□□ 1.34
VPS35-202ENST00000561713 MAP3K10Q02779 954 aa23.41■■□□□ 1.34
VPS35-202ENST00000561713 MECOMQ03112 1051 aa23.41■■□□□ 1.34
VPS35-202ENST00000561713 G3BP1Q13283 466 aaKnown RBP eCLIP23.41■■□□□ 1.34
VPS35-202ENST00000561713 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.41■■□□□ 1.34
VPS35-202ENST00000561713 ELNP15502 786 aa23.4■■□□□ 1.34
VPS35-202ENST00000561713 MCAMP43121 646 aa23.4■■□□□ 1.34
VPS35-202ENST00000561713 FLT3LGP49771 235 aa23.4■■□□□ 1.34
VPS35-202ENST00000561713 TRIM75PA6NK02 468 aa23.39■■□□□ 1.33
VPS35-202ENST00000561713 FARP2O94887 1054 aaPredicted RBP23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms