RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 UQCRFS1P1P0C7P4 283 aa12.58□□□□□ -0.4
LDLR-214ENST00000560628 ARID4AP29374 1257 aaPredicted RBP12.58□□□□□ -0.4
LDLR-214ENST00000560628 MCAMP43121 646 aa12.58□□□□□ -0.4
LDLR-214ENST00000560628 TNNI3KQ59H18 835 aa12.58□□□□□ -0.4
LDLR-214ENST00000560628 TTC39AQ5SRH9 613 aa12.58□□□□□ -0.4
LDLR-214ENST00000560628 LRP2BPQ9P2M1 347 aa12.58□□□□□ -0.4
LDLR-214ENST00000560628 PTPN22Q9Y2R2 807 aa12.58□□□□□ -0.4
LDLR-214ENST00000560628 FPGT-TNNI3KV9GXZ4 949 aa12.58□□□□□ -0.4
LDLR-214ENST00000560628 AK9Q5TCS8 1911 aa12.58□□□□□ -0.4
LDLR-214ENST00000560628 ZBED9Q6R2W3 1325 aa12.58□□□□□ -0.4
LDLR-214ENST00000560628 PHF20L1A8MW92 1017 aa12.57□□□□□ -0.4
LDLR-214ENST00000560628 RHBDL3P58872 404 aa12.57□□□□□ -0.4
LDLR-214ENST00000560628 GSTO1P78417 241 aa12.57□□□□□ -0.4
LDLR-214ENST00000560628 CCDC158Q5M9N0 1113 aa12.57□□□□□ -0.4
LDLR-214ENST00000560628 NSUN4Q96CB9 384 aaKnown RBP12.57□□□□□ -0.4
LDLR-214ENST00000560628 GPR108Q9NPR9 543 aa12.57□□□□□ -0.4
LDLR-214ENST00000560628 PDHXO00330 501 aa12.56□□□□□ -0.4
LDLR-214ENST00000560628 TLR2O60603 784 aa12.56□□□□□ -0.4
LDLR-214ENST00000560628 NOL9Q5SY16 702 aaKnown RBP12.56□□□□□ -0.4
LDLR-214ENST00000560628 CCDC8Q9H0W5 538 aaPredicted RBP12.56□□□□□ -0.4
LDLR-214ENST00000560628 PICK1Q9NRD5 415 aa12.56□□□□□ -0.4
LDLR-214ENST00000560628 CPA4Q9UI42 421 aa12.56□□□□□ -0.4
LDLR-214ENST00000560628 KCNH4Q9UQ05 1017 aa12.56□□□□□ -0.4
LDLR-214ENST00000560628 NOP58Q9Y2X3 529 aaKnown RBP12.56□□□□□ -0.4
LDLR-214ENST00000560628 ZHX2Q9Y6X8 837 aa12.56□□□□□ -0.4
LDLR-214ENST00000560628 MYH2Q9UKX2 1941 aa12.56□□□□□ -0.4
LDLR-214ENST00000560628 FAM196BA6NMK8 535 aa12.55□□□□□ -0.4
LDLR-214ENST00000560628 MAP3K10Q02779 954 aa12.55□□□□□ -0.4
LDLR-214ENST00000560628 MOGSQ13724 837 aa12.55□□□□□ -0.4
LDLR-214ENST00000560628 ANKRD23Q86SG2 305 aa12.55□□□□□ -0.4
LDLR-214ENST00000560628 SCYL3Q8IZE3 742 aa12.55□□□□□ -0.4
LDLR-214ENST00000560628 ARHGAP39Q9C0H5 1083 aa12.55□□□□□ -0.4
LDLR-214ENST00000560628 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.55□□□□□ -0.4
LDLR-214ENST00000560628 ATRNL1Q5VV63 1379 aa12.55□□□□□ -0.4
LDLR-214ENST00000560628 CXCL11O14625 94 aa12.54□□□□□ -0.4
LDLR-214ENST00000560628 CYP2E1P05181 493 aaPredicted RBP12.54□□□□□ -0.4
LDLR-214ENST00000560628 PTPRAP18433 802 aa12.54□□□□□ -0.4
LDLR-214ENST00000560628 ZAP70P43403 619 aa12.54□□□□□ -0.4
LDLR-214ENST00000560628 ARHGEF6Q15052 776 aa12.54□□□□□ -0.4
LDLR-214ENST00000560628 NAA16Q6N069 864 aaPredicted RBP12.54□□□□□ -0.4
LDLR-214ENST00000560628 CEP85Q6P2H3 762 aa12.54□□□□□ -0.4
LDLR-214ENST00000560628 CCDC84Q86UT8 332 aaPredicted RBP12.54□□□□□ -0.4
LDLR-214ENST00000560628 TEX11Q8IYF3 940 aa12.54□□□□□ -0.4
LDLR-214ENST00000560628 SH3RF3Q8TEJ3 882 aaPredicted RBP12.54□□□□□ -0.4
LDLR-214ENST00000560628 EAF2Q96CJ1 260 aaPredicted RBP12.54□□□□□ -0.4
LDLR-214ENST00000560628 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.54□□□□□ -0.4
LDLR-214ENST00000560628 ZCCHC17Q9NP64 241 aaKnown RBP12.54□□□□□ -0.4
LDLR-214ENST00000560628 TLR7Q9NYK1 1049 aaKnown RBP12.54□□□□□ -0.4
LDLR-214ENST00000560628 DBNLQ9UJU6 430 aaKnown RBP12.54□□□□□ -0.4
LDLR-214ENST00000560628 RFX7Q2KHR2 1363 aa12.54□□□□□ -0.4
LDLR-214ENST00000560628 POTEFA5A3E0 1075 aa12.53□□□□□ -0.4
LDLR-214ENST00000560628 CTNND1O60716 968 aaKnown RBP12.53□□□□□ -0.4
LDLR-214ENST00000560628 LACTBP83111 547 aaPredicted RBP12.53□□□□□ -0.4
LDLR-214ENST00000560628 KIF22Q14807 665 aa12.53□□□□□ -0.4
LDLR-214ENST00000560628 GPAT2Q6NUI2 795 aa12.53□□□□□ -0.4
LDLR-214ENST00000560628 C17orf99Q6UX52 265 aa12.53□□□□□ -0.4
LDLR-214ENST00000560628 GADL1Q6ZQY3 521 aa12.53□□□□□ -0.4
LDLR-214ENST00000560628 NOL10Q9BSC4 688 aaKnown RBP12.53□□□□□ -0.4
LDLR-214ENST00000560628 BCL11AQ9H165 835 aa12.53□□□□□ -0.4
LDLR-214ENST00000560628 PIH1D3Q9NQM4 214 aaKnown RBP12.53□□□□□ -0.4
LDLR-214ENST00000560628 AATFQ9NY61 560 aaKnown RBP eCLIP12.53□□□□□ -0.4
LDLR-214ENST00000560628 EXOC6BQ9Y2D4 811 aa12.53□□□□□ -0.4
LDLR-214ENST00000560628 AFG3L2Q9Y4W6 797 aa12.53□□□□□ -0.4
LDLR-214ENST00000560628 PTCH2Q9Y6C5 1203 aa12.53□□□□□ -0.4
LDLR-214ENST00000560628 LAMB1P07942 1786 aa12.52□□□□□ -0.41
LDLR-214ENST00000560628 NPM3O75607 178 aaKnown RBP12.52□□□□□ -0.41
LDLR-214ENST00000560628 MAP4K4O95819 1239 aaPredicted RBP12.52□□□□□ -0.41
LDLR-214ENST00000560628 MYCP01106 439 aaPredicted RBP12.52□□□□□ -0.41
LDLR-214ENST00000560628 CYP2C8P10632 490 aa12.52□□□□□ -0.41
LDLR-214ENST00000560628 ADGRA1Q86SQ6 560 aa12.52□□□□□ -0.41
LDLR-214ENST00000560628 ARMC5Q96C12 935 aa12.52□□□□□ -0.41
LDLR-214ENST00000560628 OSBPL5Q9H0X9 879 aaPredicted RBP12.52□□□□□ -0.41
LDLR-214ENST00000560628 NDUFB9Q9Y6M9 179 aa12.52□□□□□ -0.41
LDLR-214ENST00000560628 TRIM75PA6NK02 468 aa12.51□□□□□ -0.41
LDLR-214ENST00000560628 APBB1O00213 710 aa12.51□□□□□ -0.41
LDLR-214ENST00000560628 TBC1D12O60347 775 aa12.51□□□□□ -0.41
LDLR-214ENST00000560628 BAG3O95817 575 aa12.51□□□□□ -0.41
LDLR-214ENST00000560628 CYP7A1P22680 504 aa12.51□□□□□ -0.41
LDLR-214ENST00000560628 CTGFP29279 349 aa12.51□□□□□ -0.41
LDLR-214ENST00000560628 PSMC4P43686 418 aa12.51□□□□□ -0.41
LDLR-214ENST00000560628 RRP1BQ14684 758 aaKnown RBP12.51□□□□□ -0.41
LDLR-214ENST00000560628 SLC9C1Q4G0N8 1177 aa12.51□□□□□ -0.41
LDLR-214ENST00000560628 FASTKD5Q7L8L6 764 aaKnown RBP12.51□□□□□ -0.41
LDLR-214ENST00000560628 AACSQ86V21 672 aa12.51□□□□□ -0.41
LDLR-214ENST00000560628 MAPKAPK5Q8IW41 473 aa12.51□□□□□ -0.41
LDLR-214ENST00000560628 TGFBRAP1Q8WUH2 860 aa12.51□□□□□ -0.41
LDLR-214ENST00000560628 ZNF512BQ96KM6 892 aaPredicted RBP12.51□□□□□ -0.41
LDLR-214ENST00000560628 IL1RAPL2Q9NP60 686 aa12.51□□□□□ -0.41
LDLR-214ENST00000560628 COG6Q9Y2V7 657 aa12.51□□□□□ -0.41
LDLR-214ENST00000560628 A0A0G2JLL6 359 aaPredicted RBP12.5□□□□□ -0.41
LDLR-214ENST00000560628 IDH1O75874 414 aaKnown RBP12.5□□□□□ -0.41
LDLR-214ENST00000560628 FMNL1O95466 1100 aaPredicted RBP12.5□□□□□ -0.41
LDLR-214ENST00000560628 MS4A1P11836 297 aa12.5□□□□□ -0.41
LDLR-214ENST00000560628 EN2P19622 333 aaPredicted RBP12.5□□□□□ -0.41
LDLR-214ENST00000560628 PPP4CP60510 307 aa12.5□□□□□ -0.41
LDLR-214ENST00000560628 DYNLL1P63167 89 aaKnown RBP12.5□□□□□ -0.41
LDLR-214ENST00000560628 PRRT2Q7Z6L0 340 aaPredicted RBP12.5□□□□□ -0.41
LDLR-214ENST00000560628 NBPF11Q86T75 865 aa12.5□□□□□ -0.41
LDLR-214ENST00000560628 SH3TC2Q8TF17 1288 aa12.5□□□□□ -0.41
LDLR-214ENST00000560628 TRIM47Q96LD4 638 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms