RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 PPP1R12BO60237 982 aaPredicted RBP11.79□□□□□ -0.52
SPG11-214ENST00000558989 BTDP43251 543 aa11.79□□□□□ -0.52
SPG11-214ENST00000558989 PICALMQ13492 652 aa11.79□□□□□ -0.52
SPG11-214ENST00000558989 SUPT20HL1Q3ZLR7 823 aa11.79□□□□□ -0.52
SPG11-214ENST00000558989 RASAL3Q86YV0 1011 aa11.79□□□□□ -0.52
SPG11-214ENST00000558989 CLASRPQ8N2M8 674 aaKnown RBP11.79□□□□□ -0.52
SPG11-214ENST00000558989 HHIPL1Q96JK4 782 aa11.79□□□□□ -0.52
SPG11-214ENST00000558989 WBP1LQ9NX94 342 aa11.79□□□□□ -0.52
SPG11-214ENST00000558989 PPP2R3BQ9Y5P8 575 aa11.79□□□□□ -0.52
SPG11-214ENST00000558989 THSD7BQ9C0I4 1608 aa11.79□□□□□ -0.52
SPG11-214ENST00000558989 DOCK2Q92608 1830 aa11.79□□□□□ -0.52
SPG11-214ENST00000558989 CYP2E1P05181 493 aaPredicted RBP11.79□□□□□ -0.52
SPG11-214ENST00000558989 SLC10A3P09131 477 aa11.79□□□□□ -0.52
SPG11-214ENST00000558989 IFIT2P09913 472 aaKnown RBP11.79□□□□□ -0.52
SPG11-214ENST00000558989 FKBP1BP68106 108 aa11.79□□□□□ -0.52
SPG11-214ENST00000558989 MAP2K1Q02750 393 aaPredicted RBP11.79□□□□□ -0.52
SPG11-214ENST00000558989 MIGA2Q7L4E1 593 aa11.79□□□□□ -0.52
SPG11-214ENST00000558989 ZNF384Q8TF68 577 aa11.79□□□□□ -0.52
SPG11-214ENST00000558989 CCDC102AQ96A19 550 aa11.79□□□□□ -0.52
SPG11-214ENST00000558989 KIF1BPQ96EK5 621 aa11.79□□□□□ -0.52
SPG11-214ENST00000558989 TEPSINQ96N21 525 aa11.79□□□□□ -0.52
SPG11-214ENST00000558989 MAST2Q6P0Q8 1798 aa11.78□□□□□ -0.52
SPG11-214ENST00000558989 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.78□□□□□ -0.52
SPG11-214ENST00000558989 USP2O75604 605 aaPredicted RBP11.78□□□□□ -0.52
SPG11-214ENST00000558989 LBX1P52954 281 aa11.78□□□□□ -0.52
SPG11-214ENST00000558989 PDE4CQ08493 712 aa11.78□□□□□ -0.52
SPG11-214ENST00000558989 NOGQ13253 232 aa11.78□□□□□ -0.52
SPG11-214ENST00000558989 COL13A1Q5TAT6 717 aaPredicted RBP11.78□□□□□ -0.52
SPG11-214ENST00000558989 ZFPM1Q8IX07 1006 aa11.78□□□□□ -0.52
SPG11-214ENST00000558989 ZFP91Q96JP5 570 aaPredicted RBP11.78□□□□□ -0.52
SPG11-214ENST00000558989 DNAJC2Q99543 621 aaKnown RBP11.78□□□□□ -0.52
SPG11-214ENST00000558989 MRIQ9BWK5 157 aa11.78□□□□□ -0.52
SPG11-214ENST00000558989 ANTXR1Q9H6X2 564 aa11.78□□□□□ -0.52
SPG11-214ENST00000558989 PIH1D3Q9NQM4 214 aaKnown RBP11.78□□□□□ -0.52
SPG11-214ENST00000558989 PCDHB15Q9Y5E8 787 aa11.78□□□□□ -0.52
SPG11-214ENST00000558989 MROH7-TTC4A0A0A0MT08 1334 aa11.78□□□□□ -0.52
SPG11-214ENST00000558989 IDH1O75874 414 aaKnown RBP11.77□□□□□ -0.52
SPG11-214ENST00000558989 MAP2K2P36507 400 aa11.77□□□□□ -0.52
SPG11-214ENST00000558989 IREB2P48200 963 aaKnown RBP11.77□□□□□ -0.52
SPG11-214ENST00000558989 IRX6P78412 446 aaPredicted RBP11.77□□□□□ -0.52
SPG11-214ENST00000558989 ZSCAN29Q8IWY8 852 aaPredicted RBP11.77□□□□□ -0.52
SPG11-214ENST00000558989 NSUN4Q96CB9 384 aaKnown RBP11.77□□□□□ -0.52
SPG11-214ENST00000558989 ELP3Q9H9T3 547 aa11.77□□□□□ -0.52
SPG11-214ENST00000558989 SUPT16HQ9Y5B9 1047 aaKnown RBP11.77□□□□□ -0.52
SPG11-214ENST00000558989 PDS5AQ29RF7 1337 aaKnown RBP11.77□□□□□ -0.53
SPG11-214ENST00000558989 RAB11FIP3O75154 756 aa11.76□□□□□ -0.53
SPG11-214ENST00000558989 SLURP2P0DP57 97 aa11.76□□□□□ -0.53
SPG11-214ENST00000558989 RGS3P49796 1198 aa11.76□□□□□ -0.53
SPG11-214ENST00000558989 NAA16Q6N069 864 aaPredicted RBP11.76□□□□□ -0.53
SPG11-214ENST00000558989 SLF2Q8IX21 1173 aa11.76□□□□□ -0.53
SPG11-214ENST00000558989 SLC10A4Q96EP9 437 aa11.76□□□□□ -0.53
SPG11-214ENST00000558989 AATFQ9NY61 560 aaKnown RBP eCLIP11.76□□□□□ -0.53
SPG11-214ENST00000558989 FAM198AQ9UFP1 575 aa11.76□□□□□ -0.53
SPG11-214ENST00000558989 GAKO14976 1311 aa11.76□□□□□ -0.53
SPG11-214ENST00000558989 MYH7P12883 1935 aa11.76□□□□□ -0.53
SPG11-214ENST00000558989 EDC3Q96F86 508 aaKnown RBP11.76□□□□□ -0.53
SPG11-214ENST00000558989 LRRCC1Q9C099 1032 aa11.76□□□□□ -0.53
SPG11-214ENST00000558989 MYH1P12882 1939 aa11.75□□□□□ -0.53
SPG11-214ENST00000558989 TRPA1O75762 1119 aa11.75□□□□□ -0.53
SPG11-214ENST00000558989 LDHCP07864 332 aa11.75□□□□□ -0.53
SPG11-214ENST00000558989 CTCFP49711 727 aaPredicted RBP11.75□□□□□ -0.53
SPG11-214ENST00000558989 GSTO1P78417 241 aa11.75□□□□□ -0.53
SPG11-214ENST00000558989 SLC4A8Q2Y0W8 1093 aa11.75□□□□□ -0.53
SPG11-214ENST00000558989 ADGRA1Q86SQ6 560 aa11.75□□□□□ -0.53
SPG11-214ENST00000558989 FAM151AQ8WW52 585 aa11.75□□□□□ -0.53
SPG11-214ENST00000558989 CSRNP1Q96S65 589 aa11.75□□□□□ -0.53
SPG11-214ENST00000558989 NOL10Q9BSC4 688 aaKnown RBP11.75□□□□□ -0.53
SPG11-214ENST00000558989 BOLA2Q9H3K6 86 aa11.75□□□□□ -0.53
SPG11-214ENST00000558989 DDX4Q9NQI0 724 aaKnown RBP11.75□□□□□ -0.53
SPG11-214ENST00000558989 GOLIM4O00461 696 aa11.74□□□□□ -0.53
SPG11-214ENST00000558989 HSPA8P11142 646 aaKnown RBP11.74□□□□□ -0.53
SPG11-214ENST00000558989 CYP7A1P22680 504 aa11.74□□□□□ -0.53
SPG11-214ENST00000558989 DYNLL1P63167 89 aaKnown RBP11.74□□□□□ -0.53
SPG11-214ENST00000558989 MCM6Q14566 821 aa11.74□□□□□ -0.53
SPG11-214ENST00000558989 LDLRAD1Q5T700 205 aa11.74□□□□□ -0.53
SPG11-214ENST00000558989 TSHZ3Q63HK5 1081 aa11.74□□□□□ -0.53
SPG11-214ENST00000558989 FAM83AQ86UY5 434 aa11.74□□□□□ -0.53
SPG11-214ENST00000558989 GPIHBP1Q8IV16 184 aa11.74□□□□□ -0.53
SPG11-214ENST00000558989 MAGEB6Q8N7X4 407 aa11.74□□□□□ -0.53
SPG11-214ENST00000558989 MIGA1Q8NAN2 632 aa11.74□□□□□ -0.53
SPG11-214ENST00000558989 SH3RF3Q8TEJ3 882 aaPredicted RBP11.74□□□□□ -0.53
SPG11-214ENST00000558989 ZKSCAN4Q969J2 545 aaPredicted RBP11.74□□□□□ -0.53
SPG11-214ENST00000558989 WRNIP1Q96S55 665 aa11.74□□□□□ -0.53
SPG11-214ENST00000558989 RNF39Q9H2S5 420 aa11.74□□□□□ -0.53
SPG11-214ENST00000558989 FOCADQ5VW36 1801 aa11.74□□□□□ -0.53
SPG11-214ENST00000558989 GPR75-ASB3A0A0A6YYF3 556 aa11.74□□□□□ -0.53
SPG11-214ENST00000558989 TEX11Q8IYF3 940 aa11.74□□□□□ -0.53
SPG11-214ENST00000558989 ANKRD13AQ8IZ07 590 aa11.74□□□□□ -0.53
SPG11-214ENST00000558989 EXOC6Q8TAG9 804 aa11.74□□□□□ -0.53
SPG11-214ENST00000558989 WNK4Q96J92 1243 aa11.74□□□□□ -0.53
SPG11-214ENST00000558989 ZNF512BQ96KM6 892 aaPredicted RBP11.74□□□□□ -0.53
SPG11-214ENST00000558989 DDTLA6NHG4 134 aaPredicted RBP11.73□□□□□ -0.53
SPG11-214ENST00000558989 FAM196BA6NMK8 535 aa11.73□□□□□ -0.53
SPG11-214ENST00000558989 WDHD1O75717 1129 aaPredicted RBP11.73□□□□□ -0.53
SPG11-214ENST00000558989 RHBDL3P58872 404 aa11.73□□□□□ -0.53
SPG11-214ENST00000558989 VGLL4Q14135 290 aa11.73□□□□□ -0.53
SPG11-214ENST00000558989 MAP3K11Q16584 847 aa11.73□□□□□ -0.53
SPG11-214ENST00000558989 SPRYD7Q5W111 196 aa11.73□□□□□ -0.53
SPG11-214ENST00000558989 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.73□□□□□ -0.53
SPG11-214ENST00000558989 OPTNQ96CV9 577 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms