RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 ZSCAN29Q8IWY8 852 aaPredicted RBP14.13□□□□□ -0.15
CCDC88C-208ENST00000554165 ANKRD13AQ8IZ07 590 aa14.13□□□□□ -0.15
CCDC88C-208ENST00000554165 MIGA1Q8NAN2 632 aa14.13□□□□□ -0.15
CCDC88C-208ENST00000554165 EXOC6Q8TAG9 804 aa14.13□□□□□ -0.15
CCDC88C-208ENST00000554165 WRNIP1Q96S55 665 aa14.13□□□□□ -0.15
CCDC88C-208ENST00000554165 DNAJC2Q99543 621 aaKnown RBP14.13□□□□□ -0.15
CCDC88C-208ENST00000554165 ATRNL1Q5VV63 1379 aa14.12□□□□□ -0.15
CCDC88C-208ENST00000554165 FAM196BA6NMK8 535 aa14.12□□□□□ -0.15
CCDC88C-208ENST00000554165 ENTPD3O75355 529 aa14.12□□□□□ -0.15
CCDC88C-208ENST00000554165 TEX11Q8IYF3 940 aa14.12□□□□□ -0.15
CCDC88C-208ENST00000554165 MAGEB6Q8N7X4 407 aa14.12□□□□□ -0.15
CCDC88C-208ENST00000554165 OTUD7AQ8TE49 926 aaPredicted RBP14.12□□□□□ -0.15
CCDC88C-208ENST00000554165 OPTNQ96CV9 577 aa14.12□□□□□ -0.15
CCDC88C-208ENST00000554165 R3HDMLQ9H3Y0 253 aa14.12□□□□□ -0.15
CCDC88C-208ENST00000554165 SNCAIPQ9Y6H5 919 aa14.12□□□□□ -0.15
CCDC88C-208ENST00000554165 CASP8AP2Q9UKL3 1982 aa14.11□□□□□ -0.15
CCDC88C-208ENST00000554165 ATP5JP18859 108 aa14.11□□□□□ -0.15
CCDC88C-208ENST00000554165 IRX6P78412 446 aaPredicted RBP14.11□□□□□ -0.15
CCDC88C-208ENST00000554165 OTUD5Q96G74 571 aa14.11□□□□□ -0.15
CCDC88C-208ENST00000554165 ZNF341Q9BYN7 854 aa14.11□□□□□ -0.15
CCDC88C-208ENST00000554165 PRDM10Q9NQV6 1147 aa14.11□□□□□ -0.15
CCDC88C-208ENST00000554165 TBC1D8O95759 1140 aa14.1□□□□□ -0.15
CCDC88C-208ENST00000554165 TM4SF4P48230 202 aa14.1□□□□□ -0.15
CCDC88C-208ENST00000554165 PPP4CP60510 307 aa14.1□□□□□ -0.15
CCDC88C-208ENST00000554165 DCAF15Q66K64 600 aa14.1□□□□□ -0.15
CCDC88C-208ENST00000554165 MAPKAPK5Q8IW41 473 aa14.1□□□□□ -0.15
CCDC88C-208ENST00000554165 TGFBRAP1Q8WUH2 860 aa14.1□□□□□ -0.15
CCDC88C-208ENST00000554165 OSBPL5Q9H0X9 879 aaPredicted RBP14.1□□□□□ -0.15
CCDC88C-208ENST00000554165 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.1□□□□□ -0.15
CCDC88C-208ENST00000554165 ZNF112Q9UJU3 913 aa14.1□□□□□ -0.15
CCDC88C-208ENST00000554165 CSADQ9Y600 493 aa14.1□□□□□ -0.15
CCDC88C-208ENST00000554165 MAST2Q6P0Q8 1798 aa14.09□□□□□ -0.15
CCDC88C-208ENST00000554165 UNCXA6NJT0 531 aa14.09□□□□□ -0.15
CCDC88C-208ENST00000554165 PHF20L1A8MW92 1017 aa14.09□□□□□ -0.15
CCDC88C-208ENST00000554165 IGF2BP3O00425 579 aaKnown RBP eCLIP14.09□□□□□ -0.15
CCDC88C-208ENST00000554165 CA12O43570 354 aa14.09□□□□□ -0.15
CCDC88C-208ENST00000554165 ZBTB48P10074 688 aaPredicted RBP14.09□□□□□ -0.15
CCDC88C-208ENST00000554165 PDE6AP16499 860 aa14.09□□□□□ -0.15
CCDC88C-208ENST00000554165 MAP3K12Q12852 859 aa14.09□□□□□ -0.15
CCDC88C-208ENST00000554165 SLC4A8Q2Y0W8 1093 aa14.09□□□□□ -0.15
CCDC88C-208ENST00000554165 SLC9C2Q5TAH2 1124 aa14.09□□□□□ -0.15
CCDC88C-208ENST00000554165 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.09□□□□□ -0.15
CCDC88C-208ENST00000554165 MS4A4AQ96JQ5 239 aa14.09□□□□□ -0.15
CCDC88C-208ENST00000554165 HAUS7Q99871 368 aa14.09□□□□□ -0.15
CCDC88C-208ENST00000554165 PTPN18Q99952 460 aa14.09□□□□□ -0.15
CCDC88C-208ENST00000554165 NOL10Q9BSC4 688 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-208ENST00000554165 SAP30BPQ9UHR5 308 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-208ENST00000554165 TCRBV5S4A2TA0A5A2 114 aa14.08□□□□□ -0.16
CCDC88C-208ENST00000554165 SPDYE5A6NIY4 337 aa14.08□□□□□ -0.16
CCDC88C-208ENST00000554165 BAG3O95817 575 aa14.08□□□□□ -0.16
CCDC88C-208ENST00000554165 RRP1BQ14684 758 aaKnown RBP14.08□□□□□ -0.16
CCDC88C-208ENST00000554165 CCDC84Q86UT8 332 aaPredicted RBP14.08□□□□□ -0.16
CCDC88C-208ENST00000554165 IFNL1Q8IU54 200 aa14.08□□□□□ -0.16
CCDC88C-208ENST00000554165 TNS4Q8IZW8 715 aa14.08□□□□□ -0.16
CCDC88C-208ENST00000554165 HOOK2Q96ED9 719 aa14.08□□□□□ -0.16
CCDC88C-208ENST00000554165 ECHDC1Q9NTX5 307 aa14.08□□□□□ -0.16
CCDC88C-208ENST00000554165 PAG1Q9NWQ8 432 aa14.08□□□□□ -0.16
CCDC88C-208ENST00000554165 PALD1Q9ULE6 856 aa14.08□□□□□ -0.16
CCDC88C-208ENST00000554165 ZNF532Q9HCE3 1301 aa14.08□□□□□ -0.16
CCDC88C-208ENST00000554165 DOCK2Q92608 1830 aa14.08□□□□□ -0.16
CCDC88C-208ENST00000554165 MANSC4A6NHS7 340 aaPredicted RBP14.07□□□□□ -0.16
CCDC88C-208ENST00000554165 IRF6O14896 467 aa14.07□□□□□ -0.16
CCDC88C-208ENST00000554165 NPM3O75607 178 aaKnown RBP14.07□□□□□ -0.16
CCDC88C-208ENST00000554165 MAP4K4O95819 1239 aaPredicted RBP14.07□□□□□ -0.16
CCDC88C-208ENST00000554165 IGHDP01880 384 aa14.07□□□□□ -0.16
CCDC88C-208ENST00000554165 MAP3K10Q02779 954 aa14.07□□□□□ -0.16
CCDC88C-208ENST00000554165 TTF1Q15361 905 aaPredicted RBP14.07□□□□□ -0.16
CCDC88C-208ENST00000554165 BRI3BPQ8WY22 251 aa14.07□□□□□ -0.16
CCDC88C-208ENST00000554165 SAGE1Q9NXZ1 904 aa14.07□□□□□ -0.16
CCDC88C-208ENST00000554165 FLT1P17948 1338 aa14.07□□□□□ -0.16
CCDC88C-208ENST00000554165 CDK5RAP2Q96SN8 1893 aa14.06□□□□□ -0.16
CCDC88C-208ENST00000554165 PLCG2P16885 1265 aa14.06□□□□□ -0.16
CCDC88C-208ENST00000554165 SREBF2Q12772 1141 aa14.06□□□□□ -0.16
CCDC88C-208ENST00000554165 HDAC1Q13547 482 aaPredicted RBP14.06□□□□□ -0.16
CCDC88C-208ENST00000554165 SHROOM1Q2M3G4 852 aaPredicted RBP14.06□□□□□ -0.16
CCDC88C-208ENST00000554165 ANKRD45Q5TZF3 282 aa14.06□□□□□ -0.16
CCDC88C-208ENST00000554165 ERO1BQ86YB8 467 aa14.06□□□□□ -0.16
CCDC88C-208ENST00000554165 REM2Q8IYK8 340 aaPredicted RBP14.06□□□□□ -0.16
CCDC88C-208ENST00000554165 RIOK1Q9BRS2 568 aaKnown RBP14.06□□□□□ -0.16
CCDC88C-208ENST00000554165 MAGEB6P1A0A0J9YX57 407 aa14.05□□□□□ -0.16
CCDC88C-208ENST00000554165 TESPA1A2RU30 521 aaPredicted RBP14.05□□□□□ -0.16
CCDC88C-208ENST00000554165 ADD2P35612 726 aa14.05□□□□□ -0.16
CCDC88C-208ENST00000554165 JAG1P78504 1218 aa14.05□□□□□ -0.16
CCDC88C-208ENST00000554165 EVX2Q03828 476 aa14.05□□□□□ -0.16
CCDC88C-208ENST00000554165 NOL9Q5SY16 702 aaKnown RBP14.05□□□□□ -0.16
CCDC88C-208ENST00000554165 LCORLQ8N3X6 602 aa14.05□□□□□ -0.16
CCDC88C-208ENST00000554165 DNAJC18Q9H819 358 aa14.05□□□□□ -0.16
CCDC88C-208ENST00000554165 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.05□□□□□ -0.16
CCDC88C-208ENST00000554165 SIPA1L1O43166 1804 aa14.04□□□□□ -0.16
CCDC88C-208ENST00000554165 CCL15-CCL14A0A0B4J2E2 113 aa14.04□□□□□ -0.16
CCDC88C-208ENST00000554165 PRKAB2O43741 272 aa14.04□□□□□ -0.16
CCDC88C-208ENST00000554165 PPIL2Q13356 520 aa14.04□□□□□ -0.16
CCDC88C-208ENST00000554165 CCL15Q16663 113 aa14.04□□□□□ -0.16
CCDC88C-208ENST00000554165 FAM43AQ8N2R8 423 aa14.04□□□□□ -0.16
CCDC88C-208ENST00000554165 ARMT1Q9H993 441 aa14.04□□□□□ -0.16
CCDC88C-208ENST00000554165 IGSF3O75054 1194 aa14.03□□□□□ -0.16
CCDC88C-208ENST00000554165 PTPRAP18433 802 aa14.03□□□□□ -0.16
CCDC88C-208ENST00000554165 USP5P45974 858 aa14.03□□□□□ -0.16
CCDC88C-208ENST00000554165 GTF2A2P52657 109 aa14.03□□□□□ -0.16
CCDC88C-208ENST00000554165 INHBEP58166 350 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms