RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 MIGA2Q7L4E1 593 aa23.56■■□□□ 1.36
PTCH1-227ENST00000553256 HOOK2Q96ED9 719 aa23.56■■□□□ 1.36
PTCH1-227ENST00000553256 ELP3Q9H9T3 547 aa23.56■■□□□ 1.36
PTCH1-227ENST00000553256 SPDYE5A6NIY4 337 aa23.55■■□□□ 1.36
PTCH1-227ENST00000553256 TRPA1O75762 1119 aa23.55■■□□□ 1.36
PTCH1-227ENST00000553256 DCAF15Q66K64 600 aa23.55■■□□□ 1.36
PTCH1-227ENST00000553256 ZKSCAN4Q969J2 545 aaPredicted RBP23.55■■□□□ 1.36
PTCH1-227ENST00000553256 OPTNQ96CV9 577 aa23.55■■□□□ 1.36
PTCH1-227ENST00000553256 PTPN18Q99952 460 aa23.55■■□□□ 1.36
PTCH1-227ENST00000553256 LRRCC1Q9C099 1032 aa23.55■■□□□ 1.36
PTCH1-227ENST00000553256 IGF2BP3O00425 579 aaKnown RBP eCLIP23.54■■□□□ 1.36
PTCH1-227ENST00000553256 SMARCA5O60264 1052 aaPredicted RBP23.54■■□□□ 1.36
PTCH1-227ENST00000553256 ATP5JP18859 108 aa23.54■■□□□ 1.36
PTCH1-227ENST00000553256 INPP5BP32019 993 aa23.54■■□□□ 1.36
PTCH1-227ENST00000553256 SH3RF3Q8TEJ3 882 aaPredicted RBP23.54■■□□□ 1.36
PTCH1-227ENST00000553256 WRNIP1Q96S55 665 aa23.54■■□□□ 1.36
PTCH1-227ENST00000553256 ZNF341Q9BYN7 854 aa23.54■■□□□ 1.36
PTCH1-227ENST00000553256 MANSC4A6NHS7 340 aaPredicted RBP23.53■■□□□ 1.36
PTCH1-227ENST00000553256 IFIT2P09913 472 aaKnown RBP23.53■■□□□ 1.36
PTCH1-227ENST00000553256 NOL9Q5SY16 702 aaKnown RBP23.53■■□□□ 1.36
PTCH1-227ENST00000553256 TMED8Q6PL24 325 aaPredicted RBP23.53■■□□□ 1.36
PTCH1-227ENST00000553256 INHBEP58166 350 aa23.52■■□□□ 1.36
PTCH1-227ENST00000553256 SREBF2Q12772 1141 aa23.52■■□□□ 1.36
PTCH1-227ENST00000553256 IFFO2Q5TF58 517 aa23.52■■□□□ 1.36
PTCH1-227ENST00000553256 OSBPL5Q9H0X9 879 aaPredicted RBP23.52■■□□□ 1.36
PTCH1-227ENST00000553256 R3HDMLQ9H3Y0 253 aa23.52■■□□□ 1.36
PTCH1-227ENST00000553256 AATFQ9NY61 560 aaKnown RBP eCLIP23.52■■□□□ 1.36
PTCH1-227ENST00000553256 TCRBV5S4A2TA0A5A2 114 aa23.51■■□□□ 1.35
PTCH1-227ENST00000553256 TBC1D12O60347 775 aa23.51■■□□□ 1.35
PTCH1-227ENST00000553256 PICALMQ13492 652 aa23.51■■□□□ 1.35
PTCH1-227ENST00000553256 NOM1Q5C9Z4 860 aaKnown RBP23.51■■□□□ 1.35
PTCH1-227ENST00000553256 IFNL1Q8IU54 200 aa23.51■■□□□ 1.35
PTCH1-227ENST00000553256 EDC3Q96F86 508 aaKnown RBP23.51■■□□□ 1.35
PTCH1-227ENST00000553256 SIPA1L1O43166 1804 aa23.5■■□□□ 1.35
PTCH1-227ENST00000553256 CDK5RAP2Q96SN8 1893 aa23.5■■□□□ 1.35
PTCH1-227ENST00000553256 IDH1O75874 414 aaKnown RBP23.5■■□□□ 1.35
PTCH1-227ENST00000553256 DYNLL1P63167 89 aaKnown RBP23.5■■□□□ 1.35
PTCH1-227ENST00000553256 ERO1BQ86YB8 467 aa23.5■■□□□ 1.35
PTCH1-227ENST00000553256 HAUS7Q99871 368 aa23.5■■□□□ 1.35
PTCH1-227ENST00000553256 RIOK1Q9BRS2 568 aaKnown RBP23.5■■□□□ 1.35
PTCH1-227ENST00000553256 CSADQ9Y600 493 aa23.5■■□□□ 1.35
PTCH1-227ENST00000553256 FOCADQ5VW36 1801 aa23.49■■□□□ 1.35
PTCH1-227ENST00000553256 CYP7A1P22680 504 aa23.49■■□□□ 1.35
PTCH1-227ENST00000553256 METTL16Q86W50 562 aaKnown RBP23.49■■□□□ 1.35
PTCH1-227ENST00000553256 TEX11Q8IYF3 940 aa23.49■■□□□ 1.35
PTCH1-227ENST00000553256 TNS4Q8IZW8 715 aa23.49■■□□□ 1.35
PTCH1-227ENST00000553256 MAGEB6Q8N7X4 407 aa23.49■■□□□ 1.35
PTCH1-227ENST00000553256 BRI3BPQ8WY22 251 aa23.49■■□□□ 1.35
PTCH1-227ENST00000553256 CASP8AP2Q9UKL3 1982 aa23.49■■□□□ 1.35
PTCH1-227ENST00000553256 IRF6O14896 467 aa23.48■■□□□ 1.35
PTCH1-227ENST00000553256 BAG3O95817 575 aa23.48■■□□□ 1.35
PTCH1-227ENST00000553256 PPIL2Q13356 520 aa23.48■■□□□ 1.35
PTCH1-227ENST00000553256 FLT1P17948 1338 aa23.48■■□□□ 1.35
PTCH1-227ENST00000553256 GOLIM4O00461 696 aa23.47■■□□□ 1.35
PTCH1-227ENST00000553256 TBC1D8O95759 1140 aa23.47■■□□□ 1.35
PTCH1-227ENST00000553256 PDE6AP16499 860 aa23.47■■□□□ 1.35
PTCH1-227ENST00000553256 PLCG2P16885 1265 aa23.47■■□□□ 1.35
PTCH1-227ENST00000553256 PPATQ06203 517 aa23.47■■□□□ 1.35
PTCH1-227ENST00000553256 MAP3K12Q12852 859 aa23.47■■□□□ 1.35
PTCH1-227ENST00000553256 HDAC1Q13547 482 aaPredicted RBP23.47■■□□□ 1.35
PTCH1-227ENST00000553256 MOGSQ13724 837 aa23.47■■□□□ 1.35
PTCH1-227ENST00000553256 RRP1BQ14684 758 aaKnown RBP23.47■■□□□ 1.35
PTCH1-227ENST00000553256 TTF1Q15361 905 aaPredicted RBP23.47■■□□□ 1.35
PTCH1-227ENST00000553256 OTUD5Q96G74 571 aa23.47■■□□□ 1.35
PTCH1-227ENST00000553256 BOLA2Q9H3K6 86 aa23.47■■□□□ 1.35
PTCH1-227ENST00000553256 KCNH4Q9UQ05 1017 aa23.47■■□□□ 1.35
PTCH1-227ENST00000553256 SALL3Q9BXA9 1300 aa23.47■■□□□ 1.35
PTCH1-227ENST00000553256 TGFBRAP1Q8WUH2 860 aa23.46■■□□□ 1.35
PTCH1-227ENST00000553256 DNAJC18Q9H819 358 aa23.46■■□□□ 1.35
PTCH1-227ENST00000553256 MIGA1Q8NAN2 632 aa23.45■■□□□ 1.34
PTCH1-227ENST00000553256 DNAJC2Q99543 621 aaKnown RBP23.45■■□□□ 1.34
PTCH1-227ENST00000553256 PAG1Q9NWQ8 432 aa23.45■■□□□ 1.34
PTCH1-227ENST00000553256 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.45■■□□□ 1.34
PTCH1-227ENST00000553256 ALDH1A1P00352 501 aa23.44■■□□□ 1.34
PTCH1-227ENST00000553256 CHGBP05060 677 aa23.44■■□□□ 1.34
PTCH1-227ENST00000553256 GTF2A2P52657 109 aa23.44■■□□□ 1.34
PTCH1-227ENST00000553256 AAMPQ13685 434 aa23.44■■□□□ 1.34
PTCH1-227ENST00000553256 MAPKAPK5Q8IW41 473 aa23.44■■□□□ 1.34
PTCH1-227ENST00000553256 SCYL3Q8IZE3 742 aa23.44■■□□□ 1.34
PTCH1-227ENST00000553256 ECHDC1Q9NTX5 307 aa23.44■■□□□ 1.34
PTCH1-227ENST00000553256 AK9Q5TCS8 1911 aa23.43■■□□□ 1.34
PTCH1-227ENST00000553256 FAM196BA6NMK8 535 aa23.43■■□□□ 1.34
PTCH1-227ENST00000553256 GPR25O00155 361 aa23.43■■□□□ 1.34
PTCH1-227ENST00000553256 SLFNL1Q499Z3 407 aa23.43■■□□□ 1.34
PTCH1-227ENST00000553256 SLC9C2Q5TAH2 1124 aa23.43■■□□□ 1.34
PTCH1-227ENST00000553256 CERS3Q8IU89 383 aa23.43■■□□□ 1.34
PTCH1-227ENST00000553256 ZSCAN29Q8IWY8 852 aaPredicted RBP23.43■■□□□ 1.34
PTCH1-227ENST00000553256 FAM43AQ8N2R8 423 aa23.43■■□□□ 1.34
PTCH1-227ENST00000553256 OTUD7AQ8TE49 926 aaPredicted RBP23.43■■□□□ 1.34
PTCH1-227ENST00000553256 DHX36Q9H2U1 1008 aaKnown RBP23.43■■□□□ 1.34
PTCH1-227ENST00000553256 DDX60LQ5H9U9 1706 aaKnown RBP23.42■■□□□ 1.34
PTCH1-227ENST00000553256 ZNF532Q9HCE3 1301 aa23.42■■□□□ 1.34
PTCH1-227ENST00000553256 CTNND1O60716 968 aaKnown RBP23.42■■□□□ 1.34
PTCH1-227ENST00000553256 PTPRAP18433 802 aa23.42■■□□□ 1.34
PTCH1-227ENST00000553256 ADD2P35612 726 aa23.42■■□□□ 1.34
PTCH1-227ENST00000553256 ZNF296Q8WUU4 475 aaPredicted RBP23.42■■□□□ 1.34
PTCH1-227ENST00000553256 PHIPQ8WWQ0 1821 aa23.42■■□□□ 1.34
PTCH1-227ENST00000553256 CCL15-CCL14A0A0B4J2E2 113 aa23.41■■□□□ 1.34
PTCH1-227ENST00000553256 CCL15Q16663 113 aa23.41■■□□□ 1.34
PTCH1-227ENST00000553256 EXOC6Q8TAG9 804 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms