RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 DCAF15Q66K64 600 aa13.94□□□□□ -0.18
YBX3-216ENST00000544622 MS4A4AQ96JQ5 239 aa13.94□□□□□ -0.18
YBX3-216ENST00000544622 SNCAIPQ9Y6H5 919 aa13.94□□□□□ -0.18
YBX3-216ENST00000544622 OTOFQ9HC10 1997 aa13.94□□□□□ -0.18
YBX3-216ENST00000544622 MANSC4A6NHS7 340 aaPredicted RBP13.93□□□□□ -0.18
YBX3-216ENST00000544622 SH3RF3Q8TEJ3 882 aaPredicted RBP13.93□□□□□ -0.18
YBX3-216ENST00000544622 CNKSR2Q8WXI2 1034 aa13.93□□□□□ -0.18
YBX3-216ENST00000544622 ZKSCAN4Q969J2 545 aaPredicted RBP13.93□□□□□ -0.18
YBX3-216ENST00000544622 OPTNQ96CV9 577 aa13.93□□□□□ -0.18
YBX3-216ENST00000544622 WRNIP1Q96S55 665 aa13.93□□□□□ -0.18
YBX3-216ENST00000544622 ZNF341Q9BYN7 854 aa13.93□□□□□ -0.18
YBX3-216ENST00000544622 ELP3Q9H9T3 547 aa13.93□□□□□ -0.18
YBX3-216ENST00000544622 AATFQ9NY61 560 aaKnown RBP eCLIP13.93□□□□□ -0.18
YBX3-216ENST00000544622 SPDYE5A6NIY4 337 aa13.92□□□□□ -0.18
YBX3-216ENST00000544622 TBC1D12O60347 775 aa13.92□□□□□ -0.18
YBX3-216ENST00000544622 IDH1O75874 414 aaKnown RBP13.92□□□□□ -0.18
YBX3-216ENST00000544622 BAG3O95817 575 aa13.92□□□□□ -0.18
YBX3-216ENST00000544622 INPP5BP32019 993 aa13.92□□□□□ -0.18
YBX3-216ENST00000544622 SREBF2Q12772 1141 aa13.92□□□□□ -0.18
YBX3-216ENST00000544622 AAMPQ13685 434 aa13.92□□□□□ -0.18
YBX3-216ENST00000544622 TTF1Q15361 905 aaPredicted RBP13.92□□□□□ -0.18
YBX3-216ENST00000544622 NOL9Q5SY16 702 aaKnown RBP13.92□□□□□ -0.18
YBX3-216ENST00000544622 PTPN18Q99952 460 aa13.92□□□□□ -0.18
YBX3-216ENST00000544622 OSBPL5Q9H0X9 879 aaPredicted RBP13.92□□□□□ -0.18
YBX3-216ENST00000544622 MYO5AQ9Y4I1 1855 aaKnown RBP13.92□□□□□ -0.18
YBX3-216ENST00000544622 COL2A1P02458 1487 aaPredicted RBP13.92□□□□□ -0.18
YBX3-216ENST00000544622 IGF2BP3O00425 579 aaKnown RBP eCLIP13.91□□□□□ -0.18
YBX3-216ENST00000544622 SLURP2P0DP57 97 aa13.91□□□□□ -0.18
YBX3-216ENST00000544622 PLCG2P16885 1265 aa13.91□□□□□ -0.18
YBX3-216ENST00000544622 CYP7A1P22680 504 aa13.91□□□□□ -0.18
YBX3-216ENST00000544622 MAP3K12Q12852 859 aa13.91□□□□□ -0.18
YBX3-216ENST00000544622 PICALMQ13492 652 aa13.91□□□□□ -0.18
YBX3-216ENST00000544622 NOM1Q5C9Z4 860 aaKnown RBP13.91□□□□□ -0.18
YBX3-216ENST00000544622 METTL16Q86W50 562 aaKnown RBP13.91□□□□□ -0.18
YBX3-216ENST00000544622 ERO1BQ86YB8 467 aa13.91□□□□□ -0.18
YBX3-216ENST00000544622 IFNL1Q8IU54 200 aa13.91□□□□□ -0.18
YBX3-216ENST00000544622 HAUS7Q99871 368 aa13.91□□□□□ -0.18
YBX3-216ENST00000544622 CSADQ9Y600 493 aa13.91□□□□□ -0.18
YBX3-216ENST00000544622 DOCK2Q92608 1830 aa13.91□□□□□ -0.18
YBX3-216ENST00000544622 MAST2Q6P0Q8 1798 aa13.91□□□□□ -0.18
YBX3-216ENST00000544622 TCRBV5S4A2TA0A5A2 114 aa13.9□□□□□ -0.18
YBX3-216ENST00000544622 PPATQ06203 517 aa13.9□□□□□ -0.18
YBX3-216ENST00000544622 HDAC1Q13547 482 aaPredicted RBP13.9□□□□□ -0.18
YBX3-216ENST00000544622 TEX11Q8IYF3 940 aa13.9□□□□□ -0.18
YBX3-216ENST00000544622 MAGEB6Q8N7X4 407 aa13.9□□□□□ -0.18
YBX3-216ENST00000544622 EDC3Q96F86 508 aaKnown RBP13.9□□□□□ -0.18
YBX3-216ENST00000544622 RIOK1Q9BRS2 568 aaKnown RBP13.9□□□□□ -0.18
YBX3-216ENST00000544622 BOLA2Q9H3K6 86 aa13.9□□□□□ -0.18
YBX3-216ENST00000544622 GOLIM4O00461 696 aa13.89□□□□□ -0.19
YBX3-216ENST00000544622 IRF6O14896 467 aa13.89□□□□□ -0.19
YBX3-216ENST00000544622 ALDH1A1P00352 501 aa13.89□□□□□ -0.19
YBX3-216ENST00000544622 DYNLL1P63167 89 aaKnown RBP13.89□□□□□ -0.19
YBX3-216ENST00000544622 SLC9C2Q5TAH2 1124 aa13.89□□□□□ -0.19
YBX3-216ENST00000544622 IFFO2Q5TF58 517 aa13.89□□□□□ -0.19
YBX3-216ENST00000544622 CERS3Q8IU89 383 aa13.89□□□□□ -0.19
YBX3-216ENST00000544622 TGFBRAP1Q8WUH2 860 aa13.89□□□□□ -0.19
YBX3-216ENST00000544622 OTUD5Q96G74 571 aa13.89□□□□□ -0.19
YBX3-216ENST00000544622 DHX36Q9H2U1 1008 aaKnown RBP13.89□□□□□ -0.19
YBX3-216ENST00000544622 R3HDMLQ9H3Y0 253 aa13.89□□□□□ -0.19
YBX3-216ENST00000544622 ECHDC1Q9NTX5 307 aa13.89□□□□□ -0.19
YBX3-216ENST00000544622 PAG1Q9NWQ8 432 aa13.89□□□□□ -0.19
YBX3-216ENST00000544622 FLT1P17948 1338 aa13.89□□□□□ -0.19
YBX3-216ENST00000544622 CTNND1O60716 968 aaKnown RBP13.88□□□□□ -0.19
YBX3-216ENST00000544622 TBC1D8O95759 1140 aa13.88□□□□□ -0.19
YBX3-216ENST00000544622 PDE6AP16499 860 aa13.88□□□□□ -0.19
YBX3-216ENST00000544622 GTF2A2P52657 109 aa13.88□□□□□ -0.19
YBX3-216ENST00000544622 PPIL2Q13356 520 aa13.88□□□□□ -0.19
YBX3-216ENST00000544622 ZSCAN29Q8IWY8 852 aaPredicted RBP13.88□□□□□ -0.19
YBX3-216ENST00000544622 TNS4Q8IZW8 715 aa13.88□□□□□ -0.19
YBX3-216ENST00000544622 BRI3BPQ8WY22 251 aa13.88□□□□□ -0.19
YBX3-216ENST00000544622 DNAJC2Q99543 621 aaKnown RBP13.88□□□□□ -0.19
YBX3-216ENST00000544622 NOL10Q9BSC4 688 aaKnown RBP13.88□□□□□ -0.19
YBX3-216ENST00000544622 PI4KBQ9UBF8 816 aa13.88□□□□□ -0.19
YBX3-216ENST00000544622 KCNH4Q9UQ05 1017 aa13.88□□□□□ -0.19
YBX3-216ENST00000544622 PTPRAP18433 802 aa13.87□□□□□ -0.19
YBX3-216ENST00000544622 SCYL3Q8IZE3 742 aa13.87□□□□□ -0.19
YBX3-216ENST00000544622 MIGA1Q8NAN2 632 aa13.87□□□□□ -0.19
YBX3-216ENST00000544622 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.87□□□□□ -0.19
YBX3-216ENST00000544622 SUPT16HQ9Y5B9 1047 aaKnown RBP13.87□□□□□ -0.19
YBX3-216ENST00000544622 SALL3Q9BXA9 1300 aa13.87□□□□□ -0.19
YBX3-216ENST00000544622 ZNF532Q9HCE3 1301 aa13.87□□□□□ -0.19
YBX3-216ENST00000544622 FOCADQ5VW36 1801 aa13.86□□□□□ -0.19
YBX3-216ENST00000544622 GPR25O00155 361 aa13.86□□□□□ -0.19
YBX3-216ENST00000544622 ADD2P35612 726 aa13.86□□□□□ -0.19
YBX3-216ENST00000544622 MOGSQ13724 837 aa13.86□□□□□ -0.19
YBX3-216ENST00000544622 RRP1BQ14684 758 aaKnown RBP13.86□□□□□ -0.19
YBX3-216ENST00000544622 FOXP4Q8IVH2 680 aaPredicted RBP13.86□□□□□ -0.19
YBX3-216ENST00000544622 MAPKAPK5Q8IW41 473 aa13.86□□□□□ -0.19
YBX3-216ENST00000544622 EXOC6Q8TAG9 804 aa13.86□□□□□ -0.19
YBX3-216ENST00000544622 GCC1Q96CN9 775 aa13.86□□□□□ -0.19
YBX3-216ENST00000544622 BCL11AQ9H165 835 aa13.86□□□□□ -0.19
YBX3-216ENST00000544622 DNAJC18Q9H819 358 aa13.86□□□□□ -0.19
YBX3-216ENST00000544622 HERC5Q9UII4 1024 aaKnown RBP13.86□□□□□ -0.19
YBX3-216ENST00000544622 CASP8AP2Q9UKL3 1982 aa13.85□□□□□ -0.19
YBX3-216ENST00000544622 CCL15-CCL14A0A0B4J2E2 113 aa13.85□□□□□ -0.19
YBX3-216ENST00000544622 CXCL11O14625 94 aa13.85□□□□□ -0.19
YBX3-216ENST00000544622 CHGBP05060 677 aa13.85□□□□□ -0.19
YBX3-216ENST00000544622 SNAPC2Q13487 334 aa13.85□□□□□ -0.19
YBX3-216ENST00000544622 UBE3CQ15386 1083 aa13.85□□□□□ -0.19
YBX3-216ENST00000544622 CCL15Q16663 113 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms