RNA–Protein interactions for RNA: ENST00000542552.1

ECHDC2-223, Transcript of enoyl-CoA hydratase domain containing 2, human

TSL 1 (best)

Gene ECHDC2, Length 981 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC2-223	ENST00000542552	TSKS	Q9UJT2	592 aa		18.84	■□□□□ 0.61
ECHDC2-223	ENST00000542552	CDK5RAP2	Q96SN8	1893 aa		18.84	■□□□□ 0.61
ECHDC2-223	ENST00000542552	COL2A1	P02458	1487 aa	Predicted RBP	18.84	■□□□□ 0.61
ECHDC2-223	ENST00000542552	TRPA1	O75762	1119 aa		18.83	■□□□□ 0.6
ECHDC2-223	ENST00000542552	ATP5J	P18859	108 aa		18.83	■□□□□ 0.6
ECHDC2-223	ENST00000542552	SREBF2	Q12772	1141 aa		18.83	■□□□□ 0.6
ECHDC2-223	ENST00000542552	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	18.83	■□□□□ 0.6
ECHDC2-223	ENST00000542552	WRNIP1	Q96S55	665 aa		18.83	■□□□□ 0.6
ECHDC2-223	ENST00000542552	ELP3	Q9H9T3	547 aa		18.83	■□□□□ 0.6
ECHDC2-223	ENST00000542552	SNCAIP	Q9Y6H5	919 aa		18.83	■□□□□ 0.6
ECHDC2-223	ENST00000542552	FOCAD	Q5VW36	1801 aa		18.83	■□□□□ 0.6
ECHDC2-223	ENST00000542552	DDTL	A6NHG4	134 aa	Predicted RBP	18.82	■□□□□ 0.6
ECHDC2-223	ENST00000542552	MANSC4	A6NHS7	340 aa	Predicted RBP	18.82	■□□□□ 0.6
ECHDC2-223	ENST00000542552	IDH1	O75874	414 aa	Known RBP	18.82	■□□□□ 0.6
ECHDC2-223	ENST00000542552	BAG3	O95817	575 aa		18.82	■□□□□ 0.6
ECHDC2-223	ENST00000542552	INHBE	P58166	350 aa		18.82	■□□□□ 0.6
ECHDC2-223	ENST00000542552	PICALM	Q13492	652 aa		18.82	■□□□□ 0.6
ECHDC2-223	ENST00000542552	TTF1	Q15361	905 aa	Predicted RBP	18.82	■□□□□ 0.6
ECHDC2-223	ENST00000542552	ZKSCAN4	Q969J2	545 aa	Predicted RBP	18.82	■□□□□ 0.6
ECHDC2-223	ENST00000542552	OPTN	Q96CV9	577 aa		18.82	■□□□□ 0.6
ECHDC2-223	ENST00000542552	AATF	Q9NY61	560 aa	Known RBP eCLIP	18.82	■□□□□ 0.6
ECHDC2-223	ENST00000542552	CSAD	Q9Y600	493 aa		18.82	■□□□□ 0.6
ECHDC2-223	ENST00000542552	PLCG2	P16885	1265 aa		18.81	■□□□□ 0.6
ECHDC2-223	ENST00000542552	CYP7A1	P22680	504 aa		18.81	■□□□□ 0.6
ECHDC2-223	ENST00000542552	MAP3K12	Q12852	859 aa		18.81	■□□□□ 0.6
ECHDC2-223	ENST00000542552	AAMP	Q13685	434 aa		18.81	■□□□□ 0.6
ECHDC2-223	ENST00000542552	TEX11	Q8IYF3	940 aa		18.81	■□□□□ 0.6
ECHDC2-223	ENST00000542552	CNKSR2	Q8WXI2	1034 aa		18.81	■□□□□ 0.6
ECHDC2-223	ENST00000542552	NOL10	Q9BSC4	688 aa	Known RBP	18.81	■□□□□ 0.6
ECHDC2-223	ENST00000542552	TESPA1	A2RU30	521 aa	Predicted RBP	18.8	■□□□□ 0.6
ECHDC2-223	ENST00000542552	SPDYE5	A6NIY4	337 aa		18.8	■□□□□ 0.6
ECHDC2-223	ENST00000542552	PHF20L1	A8MW92	1017 aa		18.8	■□□□□ 0.6
ECHDC2-223	ENST00000542552	INPP5B	P32019	993 aa		18.8	■□□□□ 0.6
ECHDC2-223	ENST00000542552	MAGEB6	Q8N7X4	407 aa		18.8	■□□□□ 0.6
ECHDC2-223	ENST00000542552	HAUS7	Q99871	368 aa		18.8	■□□□□ 0.6
ECHDC2-223	ENST00000542552	OSBPL5	Q9H0X9	879 aa	Predicted RBP	18.8	■□□□□ 0.6
ECHDC2-223	ENST00000542552	BCL11A	Q9H165	835 aa		18.8	■□□□□ 0.6
ECHDC2-223	ENST00000542552	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	18.8	■□□□□ 0.6
ECHDC2-223	ENST00000542552	CASP8AP2	Q9UKL3	1982 aa		18.79	■□□□□ 0.6
ECHDC2-223	ENST00000542552	GOLIM4	O00461	696 aa		18.79	■□□□□ 0.6
ECHDC2-223	ENST00000542552	HDAC1	Q13547	482 aa	Predicted RBP	18.79	■□□□□ 0.6
ECHDC2-223	ENST00000542552	NOL9	Q5SY16	702 aa	Known RBP	18.79	■□□□□ 0.6
ECHDC2-223	ENST00000542552	ERO1B	Q86YB8	467 aa		18.79	■□□□□ 0.6
ECHDC2-223	ENST00000542552	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	18.79	■□□□□ 0.6
ECHDC2-223	ENST00000542552	MS4A4A	Q96JQ5	239 aa		18.79	■□□□□ 0.6
ECHDC2-223	ENST00000542552	CFHR5	Q9BXR6	569 aa		18.79	■□□□□ 0.6
ECHDC2-223	ENST00000542552	TBC1D12	O60347	775 aa		18.78	■□□□□ 0.6
ECHDC2-223	ENST00000542552	DYNLL1	P63167	89 aa	Known RBP	18.78	■□□□□ 0.6
ECHDC2-223	ENST00000542552	IFNL1	Q8IU54	200 aa		18.78	■□□□□ 0.6
ECHDC2-223	ENST00000542552	CERS3	Q8IU89	383 aa		18.78	■□□□□ 0.6
ECHDC2-223	ENST00000542552	EDC3	Q96F86	508 aa	Known RBP	18.78	■□□□□ 0.6
ECHDC2-223	ENST00000542552	DNAJC2	Q99543	621 aa	Known RBP	18.78	■□□□□ 0.6
ECHDC2-223	ENST00000542552	BOLA2	Q9H3K6	86 aa		18.78	■□□□□ 0.6
ECHDC2-223	ENST00000542552	PAG1	Q9NWQ8	432 aa		18.78	■□□□□ 0.6
ECHDC2-223	ENST00000542552	TCRBV5S4A2T	A0A5A2	114 aa		18.77	■□□□□ 0.6
ECHDC2-223	ENST00000542552	IGF2BP3	O00425	579 aa	Known RBP eCLIP	18.77	■□□□□ 0.6
ECHDC2-223	ENST00000542552	SLURP2	P0DP57	97 aa		18.77	■□□□□ 0.6
ECHDC2-223	ENST00000542552	PDE6A	P16499	860 aa		18.77	■□□□□ 0.6
ECHDC2-223	ENST00000542552	SLC9C2	Q5TAH2	1124 aa		18.77	■□□□□ 0.6
ECHDC2-223	ENST00000542552	TNS4	Q8IZW8	715 aa		18.77	■□□□□ 0.6
ECHDC2-223	ENST00000542552	OTUD5	Q96G74	571 aa		18.77	■□□□□ 0.6
ECHDC2-223	ENST00000542552	PTPN18	Q99952	460 aa		18.77	■□□□□ 0.6
ECHDC2-223	ENST00000542552	ECHDC1	Q9NTX5	307 aa		18.77	■□□□□ 0.6
ECHDC2-223	ENST00000542552	SIPA1L1	O43166	1804 aa		18.77	■□□□□ 0.59
ECHDC2-223	ENST00000542552	FLT1	P17948	1338 aa		18.76	■□□□□ 0.59
ECHDC2-223	ENST00000542552	ALDH1A1	P00352	501 aa		18.76	■□□□□ 0.59
ECHDC2-223	ENST00000542552	PPAT	Q06203	517 aa		18.76	■□□□□ 0.59
ECHDC2-223	ENST00000542552	PPIL2	Q13356	520 aa		18.76	■□□□□ 0.59
ECHDC2-223	ENST00000542552	MIGA1	Q8NAN2	632 aa		18.76	■□□□□ 0.59
ECHDC2-223	ENST00000542552	TGFBRAP1	Q8WUH2	860 aa		18.76	■□□□□ 0.59
ECHDC2-223	ENST00000542552	RIOK1	Q9BRS2	568 aa	Known RBP	18.76	■□□□□ 0.59
ECHDC2-223	ENST00000542552	SUPT16H	Q9Y5B9	1047 aa	Known RBP	18.76	■□□□□ 0.59
ECHDC2-223	ENST00000542552	TBC1D8	O95759	1140 aa		18.75	■□□□□ 0.59
ECHDC2-223	ENST00000542552	GTF2A2	P52657	109 aa		18.75	■□□□□ 0.59
ECHDC2-223	ENST00000542552	NOM1	Q5C9Z4	860 aa	Known RBP	18.75	■□□□□ 0.59
ECHDC2-223	ENST00000542552	METTL16	Q86W50	562 aa	Known RBP	18.75	■□□□□ 0.59
ECHDC2-223	ENST00000542552	MAPKAPK5	Q8IW41	473 aa		18.75	■□□□□ 0.59
ECHDC2-223	ENST00000542552	BRI3BP	Q8WY22	251 aa		18.75	■□□□□ 0.59
ECHDC2-223	ENST00000542552	DHX36	Q9H2U1	1008 aa	Known RBP	18.75	■□□□□ 0.59
ECHDC2-223	ENST00000542552	ZNF532	Q9HCE3	1301 aa		18.74	■□□□□ 0.59
ECHDC2-223	ENST00000542552	MYH7	P12883	1935 aa		18.74	■□□□□ 0.59
ECHDC2-223	ENST00000542552	IRF6	O14896	467 aa		18.74	■□□□□ 0.59
ECHDC2-223	ENST00000542552	EXOC6	Q8TAG9	804 aa		18.74	■□□□□ 0.59
ECHDC2-223	ENST00000542552	PI4KB	Q9UBF8	816 aa		18.74	■□□□□ 0.59
ECHDC2-223	ENST00000542552	DOCK1	Q14185	1865 aa		18.73	■□□□□ 0.59
ECHDC2-223	ENST00000542552	MYH1	P12882	1939 aa		18.73	■□□□□ 0.59
ECHDC2-223	ENST00000542552	CTNND1	O60716	968 aa	Known RBP	18.73	■□□□□ 0.59
ECHDC2-223	ENST00000542552	SCYL3	Q8IZE3	742 aa		18.73	■□□□□ 0.59
ECHDC2-223	ENST00000542552	GCC1	Q96CN9	775 aa		18.73	■□□□□ 0.59
ECHDC2-223	ENST00000542552	GPATCH3	Q96I76	525 aa		18.73	■□□□□ 0.59
ECHDC2-223	ENST00000542552	R3HDML	Q9H3Y0	253 aa		18.73	■□□□□ 0.59
ECHDC2-223	ENST00000542552	HERC5	Q9UII4	1024 aa	Known RBP	18.73	■□□□□ 0.59
ECHDC2-223	ENST00000542552	KCNH4	Q9UQ05	1017 aa		18.73	■□□□□ 0.59
ECHDC2-223	ENST00000542552	PHIP	Q8WWQ0	1821 aa		18.72	■□□□□ 0.59
ECHDC2-223	ENST00000542552	CCL15-CCL14	A0A0B4J2E2	113 aa		18.72	■□□□□ 0.59
ECHDC2-223	ENST00000542552	MAGEB6P1	A0A0J9YX57	407 aa		18.72	■□□□□ 0.59
ECHDC2-223	ENST00000542552	CETP	P11597	493 aa		18.72	■□□□□ 0.59
ECHDC2-223	ENST00000542552	ADD2	P35612	726 aa		18.72	■□□□□ 0.59
ECHDC2-223	ENST00000542552	SNAPC2	Q13487	334 aa		18.72	■□□□□ 0.59
ECHDC2-223	ENST00000542552	CCL15	Q16663	113 aa		18.72	■□□□□ 0.59

Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms