RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 PRKCZQ05513 592 aa19.24■□□□□ 0.67
CLSTN3-213ENST00000541953 PI16Q6UXB8 463 aa19.24■□□□□ 0.67
CLSTN3-213ENST00000541953 IDI2Q9BXS1 227 aa19.24■□□□□ 0.67
CLSTN3-213ENST00000541953 GNL3LQ9NVN8 582 aaKnown RBP19.24■□□□□ 0.67
CLSTN3-213ENST00000541953 GABRQQ9UN88 632 aa19.24■□□□□ 0.67
CLSTN3-213ENST00000541953 MYPNQ86TC9 1320 aa19.24■□□□□ 0.67
CLSTN3-213ENST00000541953 TRIOBPQ9H2D6 2365 aa19.24■□□□□ 0.67
CLSTN3-213ENST00000541953 FAM196BA6NMK8 535 aa19.23■□□□□ 0.67
CLSTN3-213ENST00000541953 H0YGN5 161 aa19.23■□□□□ 0.67
CLSTN3-213ENST00000541953 TFCP2Q12800 502 aa19.23■□□□□ 0.67
CLSTN3-213ENST00000541953 PICALMQ13492 652 aa19.23■□□□□ 0.67
CLSTN3-213ENST00000541953 SCYL3Q8IZE3 742 aa19.23■□□□□ 0.67
CLSTN3-213ENST00000541953 ABCF2Q9UG63 623 aa19.23■□□□□ 0.67
CLSTN3-213ENST00000541953 ZHX2Q9Y6X8 837 aa19.23■□□□□ 0.67
CLSTN3-213ENST00000541953 A0A0G2JLL6 359 aaPredicted RBP19.22■□□□□ 0.67
CLSTN3-213ENST00000541953 A0A1B0GUL7 405 aa19.22■□□□□ 0.67
CLSTN3-213ENST00000541953 SEMA3EO15041 775 aa19.22■□□□□ 0.67
CLSTN3-213ENST00000541953 FMNL1O95466 1100 aaPredicted RBP19.22■□□□□ 0.67
CLSTN3-213ENST00000541953 PTPRAP18433 802 aa19.22■□□□□ 0.67
CLSTN3-213ENST00000541953 BTDP43251 543 aa19.22■□□□□ 0.67
CLSTN3-213ENST00000541953 PRRT2Q7Z6L0 340 aaPredicted RBP19.22■□□□□ 0.67
CLSTN3-213ENST00000541953 XAGE2Q96GT9 111 aa19.22■□□□□ 0.67
CLSTN3-213ENST00000541953 AFG3L2Q9Y4W6 797 aa19.22■□□□□ 0.67
CLSTN3-213ENST00000541953 SIPA1L1O43166 1804 aa19.22■□□□□ 0.67
CLSTN3-213ENST00000541953 ATAD5Q96QE3 1844 aa19.21■□□□□ 0.67
CLSTN3-213ENST00000541953 ENTPD3O75355 529 aa19.21■□□□□ 0.67
CLSTN3-213ENST00000541953 GNRH1P01148 92 aa19.21■□□□□ 0.67
CLSTN3-213ENST00000541953 RARSP54136 660 aaKnown RBP19.21■□□□□ 0.67
CLSTN3-213ENST00000541953 RHBDL3P58872 404 aa19.21■□□□□ 0.67
CLSTN3-213ENST00000541953 MAP3K10Q02779 954 aa19.21■□□□□ 0.67
CLSTN3-213ENST00000541953 DZIP1Q86YF9 867 aaKnown RBP19.21■□□□□ 0.67
CLSTN3-213ENST00000541953 PARK7Q99497 189 aaKnown RBP19.21■□□□□ 0.67
CLSTN3-213ENST00000541953 API5Q9BZZ5 524 aaKnown RBP19.21■□□□□ 0.67
CLSTN3-213ENST00000541953 MROH7-TTC4A0A0A0MT08 1334 aa19.21■□□□□ 0.67
CLSTN3-213ENST00000541953 LAMA3Q16787 3333 aa19.2■□□□□ 0.66
CLSTN3-213ENST00000541953 CXCL11O14625 94 aa19.2■□□□□ 0.66
CLSTN3-213ENST00000541953 ZBTB22O15209 634 aa19.2■□□□□ 0.66
CLSTN3-213ENST00000541953 GRK4P32298 578 aa19.2■□□□□ 0.66
CLSTN3-213ENST00000541953 PRMT2P55345 433 aa19.2■□□□□ 0.66
CLSTN3-213ENST00000541953 MECOMQ03112 1051 aa19.2■□□□□ 0.66
CLSTN3-213ENST00000541953 UBE2Q1Q7Z7E8 422 aa19.2■□□□□ 0.66
CLSTN3-213ENST00000541953 RAET1EQ8TD07 263 aa19.2■□□□□ 0.66
CLSTN3-213ENST00000541953 PDS5AQ29RF7 1337 aaKnown RBP19.2■□□□□ 0.66
CLSTN3-213ENST00000541953 LOC285556D6RIA3 1793 aa19.19■□□□□ 0.66
CLSTN3-213ENST00000541953 SRGAP3O43295 1099 aa19.19■□□□□ 0.66
CLSTN3-213ENST00000541953 CCL5P13501 91 aa19.19■□□□□ 0.66
CLSTN3-213ENST00000541953 RRP1BQ14684 758 aaKnown RBP19.19■□□□□ 0.66
CLSTN3-213ENST00000541953 GADL1Q6ZQY3 521 aa19.19■□□□□ 0.66
CLSTN3-213ENST00000541953 TBC1D9Q6ZT07 1266 aa19.19■□□□□ 0.66
CLSTN3-213ENST00000541953 ZSCAN29Q8IWY8 852 aaPredicted RBP19.19■□□□□ 0.66
CLSTN3-213ENST00000541953 DOCK3Q8IZD9 2030 aa19.18■□□□□ 0.66
CLSTN3-213ENST00000541953 TRIM75PA6NK02 468 aa19.18■□□□□ 0.66
CLSTN3-213ENST00000541953 TREML2Q5T2D2 321 aa19.18■□□□□ 0.66
CLSTN3-213ENST00000541953 FAM163AQ96GL9 167 aaPredicted RBP19.18■□□□□ 0.66
CLSTN3-213ENST00000541953 HMG20BQ9P0W2 317 aa19.18■□□□□ 0.66
CLSTN3-213ENST00000541953 CT47B1P0C2W7 299 aaPredicted RBP19.17■□□□□ 0.66
CLSTN3-213ENST00000541953 ELNP15502 786 aa19.17■□□□□ 0.66
CLSTN3-213ENST00000541953 MTX1Q13505 466 aa19.17■□□□□ 0.66
CLSTN3-213ENST00000541953 ZGPATQ8N5A5 531 aaKnown RBP19.17■□□□□ 0.66
CLSTN3-213ENST00000541953 UNC93B1Q9H1C4 597 aa19.17■□□□□ 0.66
CLSTN3-213ENST00000541953 PICK1Q9NRD5 415 aa19.17■□□□□ 0.66
CLSTN3-213ENST00000541953 CDK5RAP2Q96SN8 1893 aa19.17■□□□□ 0.66
CLSTN3-213ENST00000541953 MYO5AQ9Y4I1 1855 aaKnown RBP19.17■□□□□ 0.66
CLSTN3-213ENST00000541953 GPR75-ASB3A0A0A6YYF3 556 aa19.16■□□□□ 0.66
CLSTN3-213ENST00000541953 PNMA6EA0A0J9YXQ4 647 aa19.16■□□□□ 0.66
CLSTN3-213ENST00000541953 GJA8P48165 433 aa19.16■□□□□ 0.66
CLSTN3-213ENST00000541953 FCGRTP55899 365 aa19.16■□□□□ 0.66
CLSTN3-213ENST00000541953 MAST2Q6P0Q8 1798 aa19.15■□□□□ 0.66
CLSTN3-213ENST00000541953 TRIM27P14373 513 aa19.15■□□□□ 0.66
CLSTN3-213ENST00000541953 CHRDL2Q6WN34 429 aa19.15■□□□□ 0.66
CLSTN3-213ENST00000541953 NSUN4Q96CB9 384 aaKnown RBP19.15■□□□□ 0.66
CLSTN3-213ENST00000541953 NEUROD6Q96NK8 337 aa19.15■□□□□ 0.66
CLSTN3-213ENST00000541953 RNF208Q9H0X6 261 aa19.15■□□□□ 0.66
CLSTN3-213ENST00000541953 ALPK3Q96L96 1907 aa19.15■□□□□ 0.66
CLSTN3-213ENST00000541953 CTNND1O60716 968 aaKnown RBP19.14■□□□□ 0.65
CLSTN3-213ENST00000541953 GJB1P08034 283 aa19.14■□□□□ 0.65
CLSTN3-213ENST00000541953 HOXD10P28358 340 aa19.14■□□□□ 0.65
CLSTN3-213ENST00000541953 MCAMP43121 646 aa19.14■□□□□ 0.65
CLSTN3-213ENST00000541953 FLT3LGP49771 235 aa19.14■□□□□ 0.65
CLSTN3-213ENST00000541953 MVPQ14764 893 aaKnown RBP19.14■□□□□ 0.65
CLSTN3-213ENST00000541953 ERICH6Q7L0X2 663 aa19.14■□□□□ 0.65
CLSTN3-213ENST00000541953 FASTKD5Q7L8L6 764 aaKnown RBP19.14■□□□□ 0.65
CLSTN3-213ENST00000541953 BCAR3O75815 825 aa19.13■□□□□ 0.65
CLSTN3-213ENST00000541953 SHROOM1Q2M3G4 852 aaPredicted RBP19.13■□□□□ 0.65
CLSTN3-213ENST00000541953 ANKRD13CQ8N6S4 541 aa19.13■□□□□ 0.65
CLSTN3-213ENST00000541953 SPATA5Q8NB90 893 aa19.13■□□□□ 0.65
CLSTN3-213ENST00000541953 U2AF1L4Q8WU68 220 aaKnown RBP19.13■□□□□ 0.65
CLSTN3-213ENST00000541953 BIN2Q9UBW5 565 aaPredicted RBP19.13■□□□□ 0.65
CLSTN3-213ENST00000541953 PLXNB2O15031 1838 aa19.13■□□□□ 0.65
CLSTN3-213ENST00000541953 COL2A1P02458 1487 aaPredicted RBP19.12■□□□□ 0.65
CLSTN3-213ENST00000541953 ADCY3O60266 1144 aa19.12■□□□□ 0.65
CLSTN3-213ENST00000541953 INHAP05111 366 aa19.12■□□□□ 0.65
CLSTN3-213ENST00000541953 GNAI3P08754 354 aa19.12■□□□□ 0.65
CLSTN3-213ENST00000541953 ARID4AP29374 1257 aaPredicted RBP19.12■□□□□ 0.65
CLSTN3-213ENST00000541953 JAG1P78504 1218 aa19.12■□□□□ 0.65
CLSTN3-213ENST00000541953 SPTY2D1Q68D10 685 aaPredicted RBP19.12■□□□□ 0.65
CLSTN3-213ENST00000541953 SLAIN1Q8ND83 568 aa19.12■□□□□ 0.65
CLSTN3-213ENST00000541953 ARHGAP45Q92619 1136 aa19.12■□□□□ 0.65
CLSTN3-213ENST00000541953 OSBPL5Q9H0X9 879 aaPredicted RBP19.12■□□□□ 0.65
CLSTN3-213ENST00000541953 RBM27Q9P2N5 1060 aaKnown RBP19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms