RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 PICK1Q9NRD5 415 aa21.94■■□□□ 1.1
PCF11-206ENST00000533018 LDHCP07864 332 aa21.93■■□□□ 1.1
PCF11-206ENST00000533018 SLC9C1Q4G0N8 1177 aa21.93■■□□□ 1.1
PCF11-206ENST00000533018 SH3BP5LQ7L8J4 393 aa21.93■■□□□ 1.1
PCF11-206ENST00000533018 ANKRD23Q86SG2 305 aa21.93■■□□□ 1.1
PCF11-206ENST00000533018 ITPRIPQ8IWB1 547 aa21.93■■□□□ 1.1
PCF11-206ENST00000533018 ARHGAP39Q9C0H5 1083 aa21.93■■□□□ 1.1
PCF11-206ENST00000533018 C1orf115Q9H7X2 142 aa21.93■■□□□ 1.1
PCF11-206ENST00000533018 DDX4Q9NQI0 724 aaKnown RBP21.93■■□□□ 1.1
PCF11-206ENST00000533018 KCNH4Q9UQ05 1017 aa21.93■■□□□ 1.1
PCF11-206ENST00000533018 PTCH2Q9Y6C5 1203 aa21.93■■□□□ 1.1
PCF11-206ENST00000533018 MKI67P46013 3256 aaKnown RBP21.93■■□□□ 1.1
PCF11-206ENST00000533018 GPR75-ASB3A0A0A6YYF3 556 aa21.92■■□□□ 1.1
PCF11-206ENST00000533018 POTEFA5A3E0 1075 aa21.92■■□□□ 1.1
PCF11-206ENST00000533018 DDTLA6NHG4 134 aaPredicted RBP21.92■■□□□ 1.1
PCF11-206ENST00000533018 UQCRFS1P1P0C7P4 283 aa21.92■■□□□ 1.1
PCF11-206ENST00000533018 ARID4AP29374 1257 aaPredicted RBP21.92■■□□□ 1.1
PCF11-206ENST00000533018 LACTBP83111 547 aaPredicted RBP21.92■■□□□ 1.1
PCF11-206ENST00000533018 NBPF11Q86T75 865 aa21.92■■□□□ 1.1
PCF11-206ENST00000533018 SCYL3Q8IZE3 742 aa21.92■■□□□ 1.1
PCF11-206ENST00000533018 LRP2BPQ9P2M1 347 aa21.92■■□□□ 1.1
PCF11-206ENST00000533018 CPA4Q9UI42 421 aa21.92■■□□□ 1.1
PCF11-206ENST00000533018 ZHX2Q9Y6X8 837 aa21.92■■□□□ 1.1
PCF11-206ENST00000533018 PHF20L1A8MW92 1017 aa21.91■■□□□ 1.1
PCF11-206ENST00000533018 SURF6O75683 361 aaKnown RBP21.91■■□□□ 1.1
PCF11-206ENST00000533018 ATP8B2P98198 1209 aa21.91■■□□□ 1.1
PCF11-206ENST00000533018 TTC39AQ5SRH9 613 aa21.91■■□□□ 1.1
PCF11-206ENST00000533018 ARMC5Q96C12 935 aa21.91■■□□□ 1.1
PCF11-206ENST00000533018 NSUN4Q96CB9 384 aaKnown RBP21.91■■□□□ 1.1
PCF11-206ENST00000533018 TMEM106CQ9BVX2 250 aa21.91■■□□□ 1.1
PCF11-206ENST00000533018 ZSWIM8A7E2V4 1837 aa21.91■■□□□ 1.1
PCF11-206ENST00000533018 CXCL11O14625 94 aa21.9■■□□□ 1.1
PCF11-206ENST00000533018 MYCP01106 439 aaPredicted RBP21.9■■□□□ 1.1
PCF11-206ENST00000533018 MCAMP43121 646 aa21.9■■□□□ 1.1
PCF11-206ENST00000533018 CCDC158Q5M9N0 1113 aa21.9■■□□□ 1.1
PCF11-206ENST00000533018 ZNF384Q8TF68 577 aa21.9■■□□□ 1.1
PCF11-206ENST00000533018 RFX7Q2KHR2 1363 aa21.89■■□□□ 1.1
PCF11-206ENST00000533018 ATRNL1Q5VV63 1379 aa21.89■■□□□ 1.1
PCF11-206ENST00000533018 SLURP2P0DP57 97 aa21.89■■□□□ 1.09
PCF11-206ENST00000533018 PTPRAP18433 802 aa21.89■■□□□ 1.09
PCF11-206ENST00000533018 RHBDL3P58872 404 aa21.89■■□□□ 1.09
PCF11-206ENST00000533018 PRPF38BQ5VTL8 546 aaKnown RBP21.89■■□□□ 1.09
PCF11-206ENST00000533018 C17orf99Q6UX52 265 aa21.89■■□□□ 1.09
PCF11-206ENST00000533018 NOL10Q9BSC4 688 aaKnown RBP21.89■■□□□ 1.09
PCF11-206ENST00000533018 SNRKQ9NRH2 765 aa21.89■■□□□ 1.09
PCF11-206ENST00000533018 POLA2Q14181 598 aa21.88■■□□□ 1.09
PCF11-206ENST00000533018 SLC4A8Q2Y0W8 1093 aa21.88■■□□□ 1.09
PCF11-206ENST00000533018 TNNI3KQ59H18 835 aa21.88■■□□□ 1.09
PCF11-206ENST00000533018 GADL1Q6ZQY3 521 aa21.88■■□□□ 1.09
PCF11-206ENST00000533018 SSH3Q8TE77 659 aa21.88■■□□□ 1.09
PCF11-206ENST00000533018 PARK7Q99497 189 aaKnown RBP21.88■■□□□ 1.09
PCF11-206ENST00000533018 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.88■■□□□ 1.09
PCF11-206ENST00000533018 FPGT-TNNI3KV9GXZ4 949 aa21.88■■□□□ 1.09
PCF11-206ENST00000533018 CTNND1O60716 968 aaKnown RBP21.87■■□□□ 1.09
PCF11-206ENST00000533018 FMNL1O95466 1100 aaPredicted RBP21.87■■□□□ 1.09
PCF11-206ENST00000533018 GNRH1P01148 92 aa21.87■■□□□ 1.09
PCF11-206ENST00000533018 EN2P19622 333 aaPredicted RBP21.87■■□□□ 1.09
PCF11-206ENST00000533018 PSMC4P43686 418 aa21.87■■□□□ 1.09
PCF11-206ENST00000533018 MOGSQ13724 837 aa21.87■■□□□ 1.09
PCF11-206ENST00000533018 FASTKD5Q7L8L6 764 aaKnown RBP21.87■■□□□ 1.09
PCF11-206ENST00000533018 TEX11Q8IYF3 940 aa21.87■■□□□ 1.09
PCF11-206ENST00000533018 ZNF333Q96JL9 665 aa21.87■■□□□ 1.09
PCF11-206ENST00000533018 DBNDD2Q9BQY9 259 aa21.87■■□□□ 1.09
PCF11-206ENST00000533018 GPR108Q9NPR9 543 aa21.87■■□□□ 1.09
PCF11-206ENST00000533018 DOCK1Q14185 1865 aa21.87■■□□□ 1.09
PCF11-206ENST00000533018 CYP2C8P10632 490 aa21.86■■□□□ 1.09
PCF11-206ENST00000533018 RLBP1P12271 317 aa21.86■■□□□ 1.09
PCF11-206ENST00000533018 MAP3K10Q02779 954 aa21.86■■□□□ 1.09
PCF11-206ENST00000533018 SH3TC2Q8TF17 1288 aa21.86■■□□□ 1.09
PCF11-206ENST00000533018 AFG3L2Q9Y4W6 797 aa21.86■■□□□ 1.09
PCF11-206ENST00000533018 RBBP6Q7Z6E9 1792 aaKnown RBP21.86■■□□□ 1.09
PCF11-206ENST00000533018 TRIM75PA6NK02 468 aa21.85■■□□□ 1.09
PCF11-206ENST00000533018 FAM196BA6NMK8 535 aa21.85■■□□□ 1.09
PCF11-206ENST00000533018 ZBTB7BO15156 539 aaPredicted RBP21.85■■□□□ 1.09
PCF11-206ENST00000533018 MAP4K4O95819 1239 aaPredicted RBP21.85■■□□□ 1.09
PCF11-206ENST00000533018 NAA16Q6N069 864 aaPredicted RBP21.85■■□□□ 1.09
PCF11-206ENST00000533018 GPAT2Q6NUI2 795 aa21.85■■□□□ 1.09
PCF11-206ENST00000533018 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.85■■□□□ 1.09
PCF11-206ENST00000533018 A0A0G2JLL6 359 aaPredicted RBP21.84■■□□□ 1.09
PCF11-206ENST00000533018 NPM3O75607 178 aaKnown RBP21.84■■□□□ 1.09
PCF11-206ENST00000533018 HOXD10P28358 340 aa21.84■■□□□ 1.09
PCF11-206ENST00000533018 PRMT2P55345 433 aa21.84■■□□□ 1.09
PCF11-206ENST00000533018 PRRT2Q7Z6L0 340 aaPredicted RBP21.84■■□□□ 1.09
PCF11-206ENST00000533018 SH3RF3Q8TEJ3 882 aaPredicted RBP21.84■■□□□ 1.09
PCF11-206ENST00000533018 OSBPL5Q9H0X9 879 aaPredicted RBP21.84■■□□□ 1.09
PCF11-206ENST00000533018 AATFQ9NY61 560 aaKnown RBP eCLIP21.84■■□□□ 1.09
PCF11-206ENST00000533018 TBC1D12O60347 775 aa21.83■■□□□ 1.09
PCF11-206ENST00000533018 BAG3O95817 575 aa21.83■■□□□ 1.09
PCF11-206ENST00000533018 CCDC84Q86UT8 332 aaPredicted RBP21.83■■□□□ 1.09
PCF11-206ENST00000533018 RAET1EQ8TD07 263 aa21.83■■□□□ 1.09
PCF11-206ENST00000533018 TRIM47Q96LD4 638 aa21.83■■□□□ 1.09
PCF11-206ENST00000533018 CCDC8Q9H0W5 538 aaPredicted RBP21.83■■□□□ 1.09
PCF11-206ENST00000533018 PTPRFP10586 1907 aa21.82■■□□□ 1.08
PCF11-206ENST00000533018 MYO5AQ9Y4I1 1855 aaKnown RBP21.82■■□□□ 1.08
PCF11-206ENST00000533018 SLC34A2O95436 690 aa21.82■■□□□ 1.08
PCF11-206ENST00000533018 CTGFP29279 349 aa21.82■■□□□ 1.08
PCF11-206ENST00000533018 SRRDQ9UH36 339 aa21.82■■□□□ 1.08
PCF11-206ENST00000533018 PHIPQ8WWQ0 1821 aa21.82■■□□□ 1.08
PCF11-206ENST00000533018 ADGRA2Q96PE1 1338 aa21.81■■□□□ 1.08
PCF11-206ENST00000533018 CYP2E1P05181 493 aaPredicted RBP21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms