RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 ANKRD23Q86SG2 305 aa16.01■□□□□ 0.15
CPSF1-204ENST00000529288 NBPF11Q86T75 865 aa16.01■□□□□ 0.15
CPSF1-204ENST00000529288 FAM163AQ96GL9 167 aaPredicted RBP16.01■□□□□ 0.15
CPSF1-204ENST00000529288 ZCCHC17Q9NP64 241 aaKnown RBP16.01■□□□□ 0.15
CPSF1-204ENST00000529288 SNRKQ9NRH2 765 aa16.01■□□□□ 0.15
CPSF1-204ENST00000529288 LRP2BPQ9P2M1 347 aa16.01■□□□□ 0.15
CPSF1-204ENST00000529288 ZHX2Q9Y6X8 837 aa16.01■□□□□ 0.15
CPSF1-204ENST00000529288 TNRC18O15417 2968 aaPredicted RBP16■□□□□ 0.15
CPSF1-204ENST00000529288 PDS5AQ29RF7 1337 aaKnown RBP16■□□□□ 0.15
CPSF1-204ENST00000529288 SURF6O75683 361 aaKnown RBP16■□□□□ 0.15
CPSF1-204ENST00000529288 EN2P19622 333 aaPredicted RBP16■□□□□ 0.15
CPSF1-204ENST00000529288 LACTBP83111 547 aaPredicted RBP16■□□□□ 0.15
CPSF1-204ENST00000529288 SLC4A8Q2Y0W8 1093 aa16■□□□□ 0.15
CPSF1-204ENST00000529288 PRPF38BQ5VTL8 546 aaKnown RBP16■□□□□ 0.15
CPSF1-204ENST00000529288 GADL1Q6ZQY3 521 aa16■□□□□ 0.15
CPSF1-204ENST00000529288 ITPRIPQ8IWB1 547 aa16■□□□□ 0.15
CPSF1-204ENST00000529288 SCYL3Q8IZE3 742 aa16■□□□□ 0.15
CPSF1-204ENST00000529288 ARMC5Q96C12 935 aa16■□□□□ 0.15
CPSF1-204ENST00000529288 KCNH4Q9UQ05 1017 aa16■□□□□ 0.15
CPSF1-204ENST00000529288 GPR75-ASB3A0A0A6YYF3 556 aa15.99■□□□□ 0.15
CPSF1-204ENST00000529288 PHF20L1A8MW92 1017 aa15.99■□□□□ 0.15
CPSF1-204ENST00000529288 FMNL1O95466 1100 aaPredicted RBP15.99■□□□□ 0.15
CPSF1-204ENST00000529288 UQCRFS1P1P0C7P4 283 aa15.99■□□□□ 0.15
CPSF1-204ENST00000529288 C17orf99Q6UX52 265 aa15.99■□□□□ 0.15
CPSF1-204ENST00000529288 SH3TC2Q8TF17 1288 aa15.99■□□□□ 0.15
CPSF1-204ENST00000529288 NOL10Q9BSC4 688 aaKnown RBP15.99■□□□□ 0.15
CPSF1-204ENST00000529288 MYH13Q9UKX3 1938 aa15.98■□□□□ 0.15
CPSF1-204ENST00000529288 FAM196BA6NMK8 535 aa15.98■□□□□ 0.15
CPSF1-204ENST00000529288 CXCL11O14625 94 aa15.98■□□□□ 0.15
CPSF1-204ENST00000529288 ZBTB22O15209 634 aa15.98■□□□□ 0.15
CPSF1-204ENST00000529288 CYP2C8P10632 490 aa15.98■□□□□ 0.15
CPSF1-204ENST00000529288 PTPRAP18433 802 aa15.98■□□□□ 0.15
CPSF1-204ENST00000529288 ARID4AP29374 1257 aaPredicted RBP15.98■□□□□ 0.15
CPSF1-204ENST00000529288 MCAMP43121 646 aa15.98■□□□□ 0.15
CPSF1-204ENST00000529288 PSMC4P43686 418 aa15.98■□□□□ 0.15
CPSF1-204ENST00000529288 ATP8B2P98198 1209 aa15.98■□□□□ 0.15
CPSF1-204ENST00000529288 CCDC158Q5M9N0 1113 aa15.98■□□□□ 0.15
CPSF1-204ENST00000529288 CCDC84Q86UT8 332 aaPredicted RBP15.98■□□□□ 0.15
CPSF1-204ENST00000529288 ZNF384Q8TF68 577 aa15.98■□□□□ 0.15
CPSF1-204ENST00000529288 NSUN4Q96CB9 384 aaKnown RBP15.98■□□□□ 0.15
CPSF1-204ENST00000529288 DBNDD2Q9BQY9 259 aa15.98■□□□□ 0.15
CPSF1-204ENST00000529288 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.98■□□□□ 0.153e-7■■□□□ 13.9
CPSF1-204ENST00000529288 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.98■□□□□ 0.15
CPSF1-204ENST00000529288 TRIM75PA6NK02 468 aa15.97■□□□□ 0.15
CPSF1-204ENST00000529288 RHBDL3P58872 404 aa15.97■□□□□ 0.15
CPSF1-204ENST00000529288 MOGSQ13724 837 aa15.97■□□□□ 0.15
CPSF1-204ENST00000529288 TNNI3KQ59H18 835 aa15.97■□□□□ 0.15
CPSF1-204ENST00000529288 TEX11Q8IYF3 940 aa15.97■□□□□ 0.15
CPSF1-204ENST00000529288 ZNF333Q96JL9 665 aa15.97■□□□□ 0.15
CPSF1-204ENST00000529288 PARK7Q99497 189 aaKnown RBP15.97■□□□□ 0.15
CPSF1-204ENST00000529288 FPGT-TNNI3KV9GXZ4 949 aa15.97■□□□□ 0.15
CPSF1-204ENST00000529288 CTNND1O60716 968 aaKnown RBP15.96■□□□□ 0.15
CPSF1-204ENST00000529288 SLC34A2O95436 690 aa15.96■□□□□ 0.15
CPSF1-204ENST00000529288 HOXD10P28358 340 aa15.96■□□□□ 0.15
CPSF1-204ENST00000529288 POLA2Q14181 598 aa15.96■□□□□ 0.15
CPSF1-204ENST00000529288 NAA16Q6N069 864 aaPredicted RBP15.96■□□□□ 0.15
CPSF1-204ENST00000529288 GPAT2Q6NUI2 795 aa15.96■□□□□ 0.15
CPSF1-204ENST00000529288 FASTKD5Q7L8L6 764 aaKnown RBP15.96■□□□□ 0.15
CPSF1-204ENST00000529288 ATRNL1Q5VV63 1379 aa15.96■□□□□ 0.15
CPSF1-204ENST00000529288 AK9Q5TCS8 1911 aa15.96■□□□□ 0.14
CPSF1-204ENST00000529288 RLBP1P12271 317 aa15.95■□□□□ 0.14
CPSF1-204ENST00000529288 CTGFP29279 349 aa15.95■□□□□ 0.14
CPSF1-204ENST00000529288 RAET1EQ8TD07 263 aa15.95■□□□□ 0.14
CPSF1-204ENST00000529288 SSH3Q8TE77 659 aa15.95■□□□□ 0.14
CPSF1-204ENST00000529288 SH3RF3Q8TEJ3 882 aaPredicted RBP15.95■□□□□ 0.14
CPSF1-204ENST00000529288 TRIM47Q96LD4 638 aa15.95■□□□□ 0.14
CPSF1-204ENST00000529288 CCDC8Q9H0W5 538 aaPredicted RBP15.95■□□□□ 0.14
CPSF1-204ENST00000529288 AATFQ9NY61 560 aaKnown RBP eCLIP15.95■□□□□ 0.14
CPSF1-204ENST00000529288 BIN2Q9UBW5 565 aaPredicted RBP15.95■□□□□ 0.14
CPSF1-204ENST00000529288 AFG3L2Q9Y4W6 797 aa15.95■□□□□ 0.14
CPSF1-204ENST00000529288 A0A0G2JLL6 359 aaPredicted RBP15.94■□□□□ 0.14
CPSF1-204ENST00000529288 ZBTB7BO15156 539 aaPredicted RBP15.94■□□□□ 0.14
CPSF1-204ENST00000529288 BAG3O95817 575 aa15.94■□□□□ 0.14
CPSF1-204ENST00000529288 GNRH1P01148 92 aa15.94■□□□□ 0.14
CPSF1-204ENST00000529288 OSBPP22059 807 aa15.94■□□□□ 0.14
CPSF1-204ENST00000529288 PRMT2P55345 433 aa15.94■□□□□ 0.14
CPSF1-204ENST00000529288 PRRT2Q7Z6L0 340 aaPredicted RBP15.94■□□□□ 0.14
CPSF1-204ENST00000529288 OSBPL5Q9H0X9 879 aaPredicted RBP15.94■□□□□ 0.14
CPSF1-204ENST00000529288 BCL11AQ9H165 835 aa15.94■□□□□ 0.14
CPSF1-204ENST00000529288 GPR108Q9NPR9 543 aa15.94■□□□□ 0.14
CPSF1-204ENST00000529288 RFX7Q2KHR2 1363 aa15.94■□□□□ 0.14
CPSF1-204ENST00000529288 LAMB1P07942 1786 aa15.94■□□□□ 0.14
CPSF1-204ENST00000529288 ZAP70P43403 619 aa15.93■□□□□ 0.14
CPSF1-204ENST00000529288 FCGRTP55899 365 aa15.93■□□□□ 0.14
CPSF1-204ENST00000529288 MAP3K10Q02779 954 aa15.93■□□□□ 0.14
CPSF1-204ENST00000529288 SMCR8Q8TEV9 937 aaPredicted RBP15.93■□□□□ 0.14
CPSF1-204ENST00000529288 SRRDQ9UH36 339 aa15.93■□□□□ 0.14
CPSF1-204ENST00000529288 MYPNQ86TC9 1320 aa15.93■□□□□ 0.14
CPSF1-204ENST00000529288 MYH2Q9UKX2 1941 aa15.92■□□□□ 0.14
CPSF1-204ENST00000529288 TBC1D12O60347 775 aa15.92■□□□□ 0.14
CPSF1-204ENST00000529288 MAP4K4O95819 1239 aaPredicted RBP15.92■□□□□ 0.14
CPSF1-204ENST00000529288 CYP2E1P05181 493 aaPredicted RBP15.92■□□□□ 0.14
CPSF1-204ENST00000529288 SPP2Q13103 211 aa15.92■□□□□ 0.14
CPSF1-204ENST00000529288 MAPKAPK5Q8IW41 473 aa15.92■□□□□ 0.14
CPSF1-204ENST00000529288 PANK1Q8TE04 598 aa15.92■□□□□ 0.14
CPSF1-204ENST00000529288 TGFBRAP1Q8WUH2 860 aa15.92■□□□□ 0.14
CPSF1-204ENST00000529288 TRIM34Q9BYJ4 488 aa15.92■□□□□ 0.14
CPSF1-204ENST00000529288 TLR7Q9NYK1 1049 aaKnown RBP15.92■□□□□ 0.14
CPSF1-204ENST00000529288 ADGRA2Q96PE1 1338 aa15.92■□□□□ 0.14
CPSF1-204ENST00000529288 HTTP42858 3142 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms