RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 TMPRSS13Q9BYE2 586 aa4.97□□□□□ -1.61
CD44-229ENST00000528672 CAPN10Q9HC96 672 aa4.97□□□□□ -1.61
CD44-229ENST00000528672 METTL5Q9NRN9 209 aaKnown RBP4.97□□□□□ -1.61
CD44-229ENST00000528672 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.97□□□□□ -1.61
CD44-229ENST00000528672 LOC100289279A0A1B0GTE1 492 aa4.96□□□□□ -1.62
CD44-229ENST00000528672 GSC2O15499 205 aa4.96□□□□□ -1.62
CD44-229ENST00000528672 DRD2P14416 443 aa4.96□□□□□ -1.62
CD44-229ENST00000528672 PAK2Q13177 524 aa4.96□□□□□ -1.62
CD44-229ENST00000528672 CAMK2GQ13555 558 aaPredicted RBP4.96□□□□□ -1.62
CD44-229ENST00000528672 INPP5AQ14642 412 aa4.96□□□□□ -1.62
CD44-229ENST00000528672 SCARA3Q6AZY7 606 aa4.96□□□□□ -1.62
CD44-229ENST00000528672 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.96□□□□□ -1.62
CD44-229ENST00000528672 SMG8Q8ND04 991 aaKnown RBP4.96□□□□□ -1.62
CD44-229ENST00000528672 GPBAR1Q8TDU6 330 aa4.96□□□□□ -1.62
CD44-229ENST00000528672 KCNB2Q92953 911 aa4.96□□□□□ -1.62
CD44-229ENST00000528672 MEGF10Q96KG7 1140 aa4.96□□□□□ -1.62
CD44-229ENST00000528672 TINF2Q9BSI4 451 aa4.96□□□□□ -1.62
CD44-229ENST00000528672 TMEM39AQ9NV64 488 aa4.96□□□□□ -1.62
CD44-229ENST00000528672 GRIN3BO60391 1043 aa4.95□□□□□ -1.62
CD44-229ENST00000528672 ZNF252P-AS1Q0IIN9 211 aa4.95□□□□□ -1.62
CD44-229ENST00000528672 CCDC81Q6ZN84 652 aa4.95□□□□□ -1.62
CD44-229ENST00000528672 PRR23CQ6ZRP0 262 aa4.95□□□□□ -1.62
CD44-229ENST00000528672 HS2ST1Q7LGA3 356 aa4.95□□□□□ -1.62
CD44-229ENST00000528672 GOLM1Q8NBJ4 401 aa4.95□□□□□ -1.62
CD44-229ENST00000528672 ZNF296Q8WUU4 475 aaPredicted RBP4.95□□□□□ -1.62
CD44-229ENST00000528672 TP53INP1Q96A56 240 aa4.95□□□□□ -1.62
CD44-229ENST00000528672 MYRFLQ96LU7 910 aa4.95□□□□□ -1.62
CD44-229ENST00000528672 TMEM74Q96NL1 305 aa4.95□□□□□ -1.62
CD44-229ENST00000528672 RUSC1Q9BVN2 902 aa4.95□□□□□ -1.62
CD44-229ENST00000528672 TGIF2Q9GZN2 237 aa4.95□□□□□ -1.62
CD44-229ENST00000528672 CCSER2Q9H7U1 834 aa4.95□□□□□ -1.62
CD44-229ENST00000528672 CYP4F12Q9HCS2 524 aa4.95□□□□□ -1.62
CD44-229ENST00000528672 CORINQ9Y5Q5 1042 aa4.95□□□□□ -1.62
CD44-229ENST00000528672 DCDC2CA8MYV0 355 aa4.94□□□□□ -1.62
CD44-229ENST00000528672 DHX15O43143 795 aaKnown RBP4.94□□□□□ -1.62
CD44-229ENST00000528672 TIAF1O95411 115 aa4.94□□□□□ -1.62
CD44-229ENST00000528672 GLB1P16278 677 aa4.94□□□□□ -1.62
CD44-229ENST00000528672 CANXP27824 592 aaKnown RBP4.94□□□□□ -1.62
CD44-229ENST00000528672 ST13P50502 369 aaKnown RBP4.94□□□□□ -1.62
CD44-229ENST00000528672 PPP2R3AQ06190 1150 aa4.94□□□□□ -1.62
CD44-229ENST00000528672 EXOSC6Q5RKV6 272 aaKnown RBP4.94□□□□□ -1.62
CD44-229ENST00000528672 FDX2Q6P4F2 183 aa4.94□□□□□ -1.62
CD44-229ENST00000528672 AGMOQ6ZNB7 445 aa4.94□□□□□ -1.62
CD44-229ENST00000528672 C12orf40Q86WS4 652 aa4.94□□□□□ -1.62
CD44-229ENST00000528672 TANGO6Q9C0B7 1094 aa4.94□□□□□ -1.62
CD44-229ENST00000528672 ANTXR1Q9H6X2 564 aa4.94□□□□□ -1.62
CD44-229ENST00000528672 KRT82Q9NSB4 513 aa4.94□□□□□ -1.62
CD44-229ENST00000528672 PPP1R9AQ9ULJ8 1098 aa4.94□□□□□ -1.62
CD44-229ENST00000528672 SMARCA5O60264 1052 aaPredicted RBP4.93□□□□□ -1.62
CD44-229ENST00000528672 DNAJA2O60884 412 aa4.93□□□□□ -1.62
CD44-229ENST00000528672 NME2P22392 152 aa4.93□□□□□ -1.62
CD44-229ENST00000528672 ARNTP27540 789 aa4.93□□□□□ -1.62
CD44-229ENST00000528672 EIF4A3P38919 411 aaKnown RBP4.93□□□□□ -1.62
CD44-229ENST00000528672 GNL2Q13823 731 aaKnown RBP4.93□□□□□ -1.62
CD44-229ENST00000528672 POU4F3Q15319 338 aa4.93□□□□□ -1.62
CD44-229ENST00000528672 NUTM2GQ5VZR2 741 aa4.93□□□□□ -1.62
CD44-229ENST00000528672 LRFN4Q6PJG9 635 aa4.93□□□□□ -1.62
CD44-229ENST00000528672 SV2BQ7L1I2 683 aa4.93□□□□□ -1.62
CD44-229ENST00000528672 UTP4Q969X6 686 aaKnown RBP4.93□□□□□ -1.62
CD44-229ENST00000528672 CORO1BQ9BR76 489 aa4.93□□□□□ -1.62
CD44-229ENST00000528672 CEP44Q9C0F1 390 aa4.93□□□□□ -1.62
CD44-229ENST00000528672 LGR6Q9HBX8 967 aa4.93□□□□□ -1.62
CD44-229ENST00000528672 GINM1Q9NU53 330 aa4.93□□□□□ -1.62
CD44-229ENST00000528672 PPT2Q9UMR5 302 aa4.93□□□□□ -1.62
CD44-229ENST00000528672 POLR3KQ9Y2Y1 108 aaPredicted RBP4.93□□□□□ -1.62
CD44-229ENST00000528672 FAM221AA4D161 298 aa4.92□□□□□ -1.62
CD44-229ENST00000528672 GSTP1P09211 210 aaKnown RBP4.92□□□□□ -1.62
CD44-229ENST00000528672 PDE3AQ14432 1141 aa4.92□□□□□ -1.62
CD44-229ENST00000528672 CPSF6Q16630 551 aaKnown RBP eCLIP4.92□□□□□ -1.62
CD44-229ENST00000528672 MCTP1Q6DN14 999 aa4.92□□□□□ -1.62
CD44-229ENST00000528672 RELL1Q8IUW5 271 aa4.92□□□□□ -1.62
CD44-229ENST00000528672 SHISA5Q8N114 240 aa4.92□□□□□ -1.62
CD44-229ENST00000528672 ARMC10Q8N2F6 343 aa4.92□□□□□ -1.62
CD44-229ENST00000528672 SLC43A3Q8NBI5 491 aa4.92□□□□□ -1.62
CD44-229ENST00000528672 DHX38Q92620 1227 aaKnown RBP4.92□□□□□ -1.62
CD44-229ENST00000528672 SPATA32Q96LK8 384 aa4.92□□□□□ -1.62
CD44-229ENST00000528672 UBL7Q96S82 380 aaPredicted RBP4.92□□□□□ -1.62
CD44-229ENST00000528672 SPON2Q9BUD6 331 aa4.92□□□□□ -1.62
CD44-229ENST00000528672 RSRP1Q9BUV0 290 aa4.92□□□□□ -1.62
CD44-229ENST00000528672 WDR18Q9BV38 432 aa4.92□□□□□ -1.62
CD44-229ENST00000528672 PRKAG2Q9UGJ0 569 aa4.92□□□□□ -1.62
CD44-229ENST00000528672 RAXQ9Y2V3 346 aa4.92□□□□□ -1.62
CD44-229ENST00000528672 MRVI1Q9Y6F6 885 aa4.92□□□□□ -1.62
CD44-229ENST00000528672 SART1O43290 800 aaKnown RBP4.91□□□□□ -1.62
CD44-229ENST00000528672 GREM1O60565 184 aa4.91□□□□□ -1.62
CD44-229ENST00000528672 ATP2B1P20020 1258 aa4.91□□□□□ -1.62
CD44-229ENST00000528672 DNAJA1P31689 397 aaKnown RBP4.91□□□□□ -1.62
CD44-229ENST00000528672 PREPP48147 710 aa4.91□□□□□ -1.62
CD44-229ENST00000528672 CLCQ05315 142 aa4.91□□□□□ -1.62
CD44-229ENST00000528672 SEZ6Q53EL9 994 aa4.91□□□□□ -1.62
CD44-229ENST00000528672 AKAP4Q5JQC9 854 aa4.91□□□□□ -1.62
CD44-229ENST00000528672 PPM1JQ5JR12 505 aa4.91□□□□□ -1.62
CD44-229ENST00000528672 SNAP47Q5SQN1 464 aa4.91□□□□□ -1.62
CD44-229ENST00000528672 LLGL2Q6P1M3 1020 aa4.91□□□□□ -1.62
CD44-229ENST00000528672 CLEC10AQ8IUN9 316 aa4.91□□□□□ -1.62
CD44-229ENST00000528672 FAM20CQ8IXL6 584 aa4.91□□□□□ -1.62
CD44-229ENST00000528672 PLPPR2Q96GM1 343 aa4.91□□□□□ -1.62
CD44-229ENST00000528672 NOC4LQ9BVI4 516 aaKnown RBP4.91□□□□□ -1.62
CD44-229ENST00000528672 YIPF2Q9BWQ6 316 aa4.91□□□□□ -1.62
CD44-229ENST00000528672 EMILIN2Q9BXX0 1053 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms