RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 FILIP1Q7Z7B0 1213 aa24.54■■□□□ 1.52
VPS28-205ENST00000526204 OSBPL5Q9H0X9 879 aaPredicted RBP24.54■■□□□ 1.52
VPS28-205ENST00000526204 MROH7-TTC4A0A0A0MT08 1334 aa24.54■■□□□ 1.52
VPS28-205ENST00000526204 CUTAO60888 179 aa24.53■■□□□ 1.52
VPS28-205ENST00000526204 SLC26A6Q9BXS9 759 aa24.53■■□□□ 1.52
VPS28-205ENST00000526204 RNF41Q9H4P4 317 aaPredicted RBP24.53■■□□□ 1.52
VPS28-205ENST00000526204 INCENPQ9NQS7 918 aa24.53■■□□□ 1.52
VPS28-205ENST00000526204 THRAP3Q9Y2W1 955 aaKnown RBP24.53■■□□□ 1.52
VPS28-205ENST00000526204 SLC4A4Q9Y6R1 1079 aa24.53■■□□□ 1.52
VPS28-205ENST00000526204 MYO5AQ9Y4I1 1855 aaKnown RBP24.53■■□□□ 1.52
VPS28-205ENST00000526204 IKBKBO14920 756 aa24.53■■□□□ 1.52
VPS28-205ENST00000526204 BCAMP50895 628 aa24.53■■□□□ 1.52
VPS28-205ENST00000526204 RCAN1P53805 252 aa24.53■■□□□ 1.52
VPS28-205ENST00000526204 ZNF710Q8N1W2 664 aa24.53■■□□□ 1.52
VPS28-205ENST00000526204 MYL10Q9BUA6 226 aa24.53■■□□□ 1.52
VPS28-205ENST00000526204 BCL2L12Q9HB09 334 aa24.53■■□□□ 1.52
VPS28-205ENST00000526204 TUBE1Q9UJT0 475 aa24.53■■□□□ 1.52
VPS28-205ENST00000526204 DOCK2Q92608 1830 aa24.53■■□□□ 1.52
VPS28-205ENST00000526204 TIAM2Q8IVF5 1701 aa24.52■■□□□ 1.52
VPS28-205ENST00000526204 ERICH2A1L162 156 aa24.52■■□□□ 1.52
VPS28-205ENST00000526204 FAM177BA6PVY3 158 aa24.52■■□□□ 1.52
VPS28-205ENST00000526204 SNAP23O00161 211 aa24.52■■□□□ 1.52
VPS28-205ENST00000526204 SAFBQ15424 915 aaKnown RBP eCLIP24.52■■□□□ 1.52
VPS28-205ENST00000526204 RESP18Q5W5W9 173 aa24.52■■□□□ 1.52
VPS28-205ENST00000526204 SHC4Q6S5L8 630 aa24.52■■□□□ 1.52
VPS28-205ENST00000526204 TRIM22Q8IYM9 498 aa24.52■■□□□ 1.52
VPS28-205ENST00000526204 TSC1Q92574 1164 aa24.52■■□□□ 1.52
VPS28-205ENST00000526204 CCDC196A0A1B0GTZ2 297 aa24.52■■□□□ 1.52
VPS28-205ENST00000526204 KCND1Q9NSA2 647 aa24.52■■□□□ 1.52
VPS28-205ENST00000526204 LRP2BPQ9P2M1 347 aa24.52■■□□□ 1.52
VPS28-205ENST00000526204 LOC102724428A0A0B4J2F2 783 aa24.51■■□□□ 1.51
VPS28-205ENST00000526204 BIN1O00499 593 aa24.51■■□□□ 1.51
VPS28-205ENST00000526204 NTSR2O95665 410 aa24.51■■□□□ 1.51
VPS28-205ENST00000526204 SIK1P57059 783 aa24.51■■□□□ 1.51
VPS28-205ENST00000526204 WTAPQ15007 396 aa24.51■■□□□ 1.51
VPS28-205ENST00000526204 DDB1Q16531 1140 aa24.51■■□□□ 1.51
VPS28-205ENST00000526204 NOSTRINQ8IVI9 506 aa24.51■■□□□ 1.51
VPS28-205ENST00000526204 LCORLQ8N3X6 602 aa24.51■■□□□ 1.51
VPS28-205ENST00000526204 NIP7Q9Y221 180 aaKnown RBP eCLIP24.51■■□□□ 1.51
VPS28-205ENST00000526204 CCZ1BP86790 482 aa24.5■■□□□ 1.51
VPS28-205ENST00000526204 CCZ1P86791 482 aaPredicted RBP24.5■■□□□ 1.51
VPS28-205ENST00000526204 ARID5BQ14865 1188 aa24.5■■□□□ 1.51
VPS28-205ENST00000526204 NBPF11Q86T75 865 aa24.5■■□□□ 1.51
VPS28-205ENST00000526204 DOT1LQ8TEK3 1739 aa24.5■■□□□ 1.51
VPS28-205ENST00000526204 PRKAB2O43741 272 aa24.5■■□□□ 1.51
VPS28-205ENST00000526204 RTN1Q16799 776 aa24.5■■□□□ 1.51
VPS28-205ENST00000526204 CDC5LQ99459 802 aaKnown RBP24.5■■□□□ 1.51
VPS28-205ENST00000526204 TACC3Q9Y6A5 838 aa24.5■■□□□ 1.51
VPS28-205ENST00000526204 KAT6BQ8WYB5 2073 aa24.49■■□□□ 1.51
VPS28-205ENST00000526204 MMP1P03956 469 aa24.49■■□□□ 1.51
VPS28-205ENST00000526204 CHRNDQ07001 517 aa24.49■■□□□ 1.51
VPS28-205ENST00000526204 ELOA2Q8IYF1 753 aaPredicted RBP24.49■■□□□ 1.51
VPS28-205ENST00000526204 TOMM22Q9NS69 142 aa24.49■■□□□ 1.51
VPS28-205ENST00000526204 COL22A1Q8NFW1 1626 aaPredicted RBP24.49■■□□□ 1.51
VPS28-205ENST00000526204 SMC2O95347 1197 aa24.49■■□□□ 1.51
VPS28-205ENST00000526204 NCAPHQ15003 741 aa24.49■■□□□ 1.51
VPS28-205ENST00000526204 SYCP1Q15431 976 aa24.49■■□□□ 1.51
VPS28-205ENST00000526204 RRP12Q5JTH9 1297 aaKnown RBP24.49■■□□□ 1.51
VPS28-205ENST00000526204 CCDC150Q8NCX0 1101 aa24.49■■□□□ 1.51
VPS28-205ENST00000526204 ZNF652Q9Y2D9 606 aa24.49■■□□□ 1.51
VPS28-205ENST00000526204 COL16A1Q07092 1604 aaPredicted RBP24.48■■□□□ 1.51
VPS28-205ENST00000526204 CEP135Q66GS9 1140 aa24.48■■□□□ 1.51
VPS28-205ENST00000526204 KRI1Q8N9T8 703 aaKnown RBP24.48■■□□□ 1.51
VPS28-205ENST00000526204 WNK3Q9BYP7 1800 aa24.48■■□□□ 1.51
VPS28-205ENST00000526204 XPO4Q9C0E2 1151 aaKnown RBP24.48■■□□□ 1.51
VPS28-205ENST00000526204 IFNKQ9P0W0 207 aa24.48■■□□□ 1.51
VPS28-205ENST00000526204 SPATA31A1Q5TZJ5 1347 aa24.47■■□□□ 1.51
VPS28-205ENST00000526204 CCDC94Q9BW85 323 aaPredicted RBP24.47■■□□□ 1.51
VPS28-205ENST00000526204 FOXP1Q9H334 677 aaPredicted RBP24.47■■□□□ 1.51
VPS28-205ENST00000526204 DEXIO95424 95 aa24.47■■□□□ 1.51
VPS28-205ENST00000526204 PRKCSHP14314 528 aaPredicted RBP24.47■■□□□ 1.51
VPS28-205ENST00000526204 PPP2R5BQ15173 497 aa24.47■■□□□ 1.51
VPS28-205ENST00000526204 PTPN14Q15678 1187 aa24.47■■□□□ 1.51
VPS28-205ENST00000526204 CCDC112Q8NEF3 446 aa24.47■■□□□ 1.51
VPS28-205ENST00000526204 GNL3LQ9NVN8 582 aaKnown RBP24.47■■□□□ 1.51
VPS28-205ENST00000526204 HOOK1Q9UJC3 728 aaKnown RBP24.47■■□□□ 1.51
VPS28-205ENST00000526204 KCNH3Q9ULD8 1083 aa24.47■■□□□ 1.51
VPS28-205ENST00000526204 MYO1BO43795 1136 aa24.46■■□□□ 1.51
VPS28-205ENST00000526204 RILPL1Q5EBL4 403 aa24.46■■□□□ 1.51
VPS28-205ENST00000526204 NYAP1Q6ZVC0 841 aa24.46■■□□□ 1.51
VPS28-205ENST00000526204 ZNF804BA4D1E1 1349 aa24.46■■□□□ 1.51
VPS28-205ENST00000526204 A0A0G2JS52 829 aa24.46■■□□□ 1.51
VPS28-205ENST00000526204 CYP7A1P22680 504 aa24.46■■□□□ 1.51
VPS28-205ENST00000526204 PPARAQ07869 468 aa24.46■■□□□ 1.51
VPS28-205ENST00000526204 ITPK1Q13572 414 aa24.46■■□□□ 1.51
VPS28-205ENST00000526204 CRACR2BQ8N4Y2 399 aaPredicted RBP24.46■■□□□ 1.51
VPS28-205ENST00000526204 ANKRD7Q92527 254 aa24.46■■□□□ 1.51
VPS28-205ENST00000526204 CLIC6Q96NY7 704 aa24.46■■□□□ 1.51
VPS28-205ENST00000526204 UBAC1Q9BSL1 405 aa24.46■■□□□ 1.51
VPS28-205ENST00000526204 ANAPC4Q9UJX5 808 aa24.46■■□□□ 1.51
VPS28-205ENST00000526204 NRDCO43847 1150 aa24.45■■□□□ 1.5
VPS28-205ENST00000526204 KRBA2Q6ZNG9 492 aa24.45■■□□□ 1.5
VPS28-205ENST00000526204 DIS3L2Q8IYB7 885 aaKnown RBP24.45■■□□□ 1.5
VPS28-205ENST00000526204 MIGA1Q8NAN2 632 aa24.45■■□□□ 1.5
VPS28-205ENST00000526204 TAOK2Q9UL54 1235 aa24.45■■□□□ 1.5
VPS28-205ENST00000526204 RREB1Q92766 1687 aa24.45■■□□□ 1.5
VPS28-205ENST00000526204 BTBD18B2RXH4 712 aa24.44■■□□□ 1.5
VPS28-205ENST00000526204 MYL5Q02045 173 aa24.44■■□□□ 1.5
VPS28-205ENST00000526204 CLEC4GQ6UXB4 293 aa24.44■■□□□ 1.5
VPS28-205ENST00000526204 CCAR2Q8N163 923 aaKnown RBP24.44■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms