RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 RASSF4Q9H2L5 321 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 EPB41L4BQ9H329 900 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 GGNBP2Q9H3C7 697 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZCCHC4Q9H5U6 513 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 QTRT2Q9H974 415 aaKnown RBP0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 CBX8Q9HC52 389 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 CWC22Q9HCG8 908 aaKnown RBP0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 DCP1AQ9NPI6 582 aaPredicted RBP0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 IGSF5Q9NSI5 407 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 TMEM39AQ9NV64 488 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 DZANK1Q9NVP4 752 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 SIRT5Q9NXA8 310 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 CXXC1Q9P0U4 656 aaPredicted RBP0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 PRKAG2Q9UGJ0 569 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 EGFL7Q9UHF1 273 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 GPN3Q9UHW5 284 aaPredicted RBP0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 DMGDHQ9UI17 866 aaKnown RBP0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 CNOT11Q9UKZ1 510 aaKnown RBP0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 PPM1HQ9ULR3 514 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 CYP8B1Q9UNU6 501 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 SPG7Q9UQ90 795 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 MAPK8IP1Q9UQF2 711 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 KCNMB2Q9Y691 235 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 TACC3Q9Y6A5 838 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 CADPSQ9ULU8 1353 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 FITM1A5D6W6 292 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 OR14I1A6ND48 311 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 OPLAHO14841 1288 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 C21orf2O43822 256 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 TNFRSF21O75509 655 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 CYP7B1O75881 506 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 TIAF1O95411 115 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 B3GALT4O96024 378 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 F13BP05160 661 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 NFICP08651 508 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 CELA3BP08861 270 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 GSTP1P09211 210 aaKnown RBP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 FAM87AP0C7U9 286 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZSCAN22P10073 491 aaPredicted RBP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 ESRRAP11474 423 aaPredicted RBP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 SRFP11831 508 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 TCF3P15923 654 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 PFKLP17858 780 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 ITGB5P18084 799 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 EPHA1P21709 976 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 FUT4P22083 530 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 GLDCP23378 1020 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 VAMP1P23763 118 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 MAOBP27338 520 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 LTKP29376 864 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 PDE6BP35913 854 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 GDNFP39905 211 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 EIF1AXP47813 144 aaKnown RBP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 TNNI2P48788 182 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 ETF1P62495 437 aaKnown RBP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 ERVK-24P63145 666 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 RNF4P78317 190 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 SRPK2P78362 688 aaKnown RBP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZP2Q05996 745 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 COL9A3Q14050 684 aaPredicted RBP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 NAA30Q147X3 362 aaPredicted RBP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 SURF1Q15526 300 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 TARBP2Q15633 366 aaKnown RBP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 KCNA10Q16322 511 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 GRIK5Q16478 980 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 MLANAQ16655 118 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 SPATS1Q496A3 300 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 HS1BP3Q53T59 392 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 SGO2Q562F6 1265 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 SFRP5Q5T4F7 317 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 KANK4Q5T7N3 995 aaPredicted RBP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 KIAA0319Q5VV43 1072 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 LILRA6Q6PI73 481 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 TXNDC11Q6PKC3 985 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 KIAA1211Q6ZU35 1233 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 CABP7Q86V35 215 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 LSRQ86X29 649 aaPredicted RBP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 IRF2BP1Q8IU81 584 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 LRRC56Q8IYG6 542 aaPredicted RBP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 ANKRD13AQ8IZ07 590 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 ABI1Q8IZP0 508 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZNF295-AS1Q8N0V1 137 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 ARMC10Q8N2F6 343 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 AGGF1Q8N302 714 aaeCLIP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 MFSD4AQ8N468 514 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 ANKS4BQ8N8V4 417 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 RNF214Q8ND24 703 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 ABHD4Q8TB40 342 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 ENOX1Q8TC92 643 aaKnown RBP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 FBF1Q8TES7 1133 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 UBASH3BQ8TF42 649 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 BCL7CQ8WUZ0 217 aaPredicted RBP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 C7orf43Q8WVR3 580 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 SREK1Q8WXA9 508 aaKnown RBP0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 MYLIPQ8WY64 445 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 UBXN4Q92575 508 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 RNF34Q969K3 372 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 NXPE3Q969Y0 559 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 RELTQ969Z4 430 aa0.84□□□□□ -2.27
RNU4-54P-201ENST00000516428 MRRFQ96E11 262 aaKnown RBP0.84□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms