RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 VGLL2Q8N8G2 317 aa9.45□□□□□ -0.9
LIMCH1-219ENST00000514096 SH3RF3Q8TEJ3 882 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-219ENST00000514096 GRIPAP1Q4V328 841 aa9.44□□□□□ -0.9
LIMCH1-219ENST00000514096 CLEC10AQ8IUN9 316 aa9.44□□□□□ -0.9
LIMCH1-219ENST00000514096 TRERF1Q96PN7 1200 aa9.44□□□□□ -0.9
LIMCH1-219ENST00000514096 KDM4AO75164 1064 aa9.44□□□□□ -0.9
LIMCH1-219ENST00000514096 COL13A1Q5TAT6 717 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-219ENST00000514096 CDC42EP5Q6NZY7 148 aa9.44□□□□□ -0.9
LIMCH1-219ENST00000514096 RPAP2Q8IXW5 612 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-219ENST00000514096 L3MBTL3Q96JM7 780 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-219ENST00000514096 KIF23Q02241 960 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-219ENST00000514096 PDE3AQ14432 1141 aa9.44□□□□□ -0.9
LIMCH1-219ENST00000514096 SAPCD2Q86UD0 394 aa9.44□□□□□ -0.9
LIMCH1-219ENST00000514096 MCM9Q9NXL9 1143 aa9.44□□□□□ -0.9
LIMCH1-219ENST00000514096 PPP4R2Q9NY27 417 aa9.44□□□□□ -0.9
LIMCH1-219ENST00000514096 HAND2P61296 217 aa9.43□□□□□ -0.9
LIMCH1-219ENST00000514096 ADGRA1Q86SQ6 560 aa9.43□□□□□ -0.9
LIMCH1-219ENST00000514096 CSADQ9Y600 493 aa9.43□□□□□ -0.9
LIMCH1-219ENST00000514096 RPS12P25398 132 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-219ENST00000514096 MAP3K12Q12852 859 aa9.43□□□□□ -0.9
LIMCH1-219ENST00000514096 EP400NLQ6ZTU2 488 aa9.43□□□□□ -0.9
LIMCH1-219ENST00000514096 ZNF771Q7L3S4 317 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-219ENST00000514096 TBC1D22AQ8WUA7 517 aa9.43□□□□□ -0.9
LIMCH1-219ENST00000514096 WDR33Q9C0J8 1336 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-219ENST00000514096 SCN9AQ15858 1988 aa9.43□□□□□ -0.9
LIMCH1-219ENST00000514096 TNNI2P48788 182 aa9.43□□□□□ -0.9
LIMCH1-219ENST00000514096 HSP90AB4PQ58FF6 505 aa9.43□□□□□ -0.9
LIMCH1-219ENST00000514096 GADL1Q6ZQY3 521 aa9.43□□□□□ -0.9
LIMCH1-219ENST00000514096 ARMC9Q7Z3E5 817 aa9.43□□□□□ -0.9
LIMCH1-219ENST00000514096 TICAM2Q86XR7 235 aa9.43□□□□□ -0.9
LIMCH1-219ENST00000514096 SLC44A5Q8NCS7 719 aa9.43□□□□□ -0.9
LIMCH1-219ENST00000514096 FEZ1Q99689 392 aa9.43□□□□□ -0.9
LIMCH1-219ENST00000514096 UTYO14607 1347 aa9.43□□□□□ -0.9
LIMCH1-219ENST00000514096 PDE4DIPQ5VU43 2346 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 BCORQ6W2J9 1755 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 CCDC85CA6NKD9 419 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 MBD4O95243 580 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 CYP2D6P10635 497 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 IL1R1P14778 569 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 FGFR2P21802 821 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 FSTL1Q12841 308 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 KLRG1Q96E93 195 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 DDX4Q9NQI0 724 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 RNF216Q9NWF9 866 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 ZNF532Q9HCE3 1301 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 DDTLA6NHG4 134 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 ERC1Q8IUD2 1116 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 RWDD1Q9H446 243 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 ZHX2Q9Y6X8 837 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 RIC1Q4ADV7 1423 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 APOBEC3HQ6NTF7 200 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 RGMBQ6NW40 437 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 SPICE1Q8N0Z3 855 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 DYNLL2Q96FJ2 89 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 GPATCH3Q96I76 525 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 GMLQ99445 158 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 PAG1Q9NWQ8 432 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 PCDH10Q9P2E7 1040 aa9.42□□□□□ -0.9
LIMCH1-219ENST00000514096 A0A0C4DFX4 3053 aa9.41□□□□□ -0.9
LIMCH1-219ENST00000514096 SBF1O95248 1867 aa9.41□□□□□ -0.9
LIMCH1-219ENST00000514096 KIAA1211Q6ZU35 1233 aa9.41□□□□□ -0.9
LIMCH1-219ENST00000514096 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.41□□□□□ -0.9
LIMCH1-219ENST00000514096 CWC22Q9HCG8 908 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-219ENST00000514096 FOXN1O15353 648 aa9.41□□□□□ -0.9
LIMCH1-219ENST00000514096 CIAO1O76071 339 aa9.41□□□□□ -0.9
LIMCH1-219ENST00000514096 UQCRFS1P1P0C7P4 283 aa9.41□□□□□ -0.9
LIMCH1-219ENST00000514096 TDO2P48775 406 aa9.41□□□□□ -0.9
LIMCH1-219ENST00000514096 TNFAIP1Q13829 316 aa9.41□□□□□ -0.9
LIMCH1-219ENST00000514096 SUPT20HL1Q3ZLR7 823 aa9.41□□□□□ -0.9
LIMCH1-219ENST00000514096 CWC27Q6UX04 472 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-219ENST00000514096 INCENPQ9NQS7 918 aa9.41□□□□□ -0.9
LIMCH1-219ENST00000514096 CREBZFQ9NS37 354 aa9.41□□□□□ -0.9
LIMCH1-219ENST00000514096 BIN2Q9UBW5 565 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-219ENST00000514096 SPTY2D1Q68D10 685 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-219ENST00000514096 CCAR1Q8IX12 1150 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-219ENST00000514096 MYO3BQ8WXR4 1341 aa9.4□□□□□ -0.9
LIMCH1-219ENST00000514096 BAG3O95817 575 aa9.4□□□□□ -0.9
LIMCH1-219ENST00000514096 SLC4A4Q9Y6R1 1079 aa9.4□□□□□ -0.9
LIMCH1-219ENST00000514096 MAGEB6P1A0A0J9YX57 407 aa9.4□□□□□ -0.91
LIMCH1-219ENST00000514096 IKQ13123 557 aaPredicted RBP9.4□□□□□ -0.91
LIMCH1-219ENST00000514096 POLA2Q14181 598 aa9.4□□□□□ -0.91
LIMCH1-219ENST00000514096 PIBF1Q8WXW3 757 aa9.4□□□□□ -0.91
LIMCH1-219ENST00000514096 LDHCP07864 332 aa9.39□□□□□ -0.91
LIMCH1-219ENST00000514096 MX1P20591 662 aa9.39□□□□□ -0.91
LIMCH1-219ENST00000514096 IREB2P48200 963 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-219ENST00000514096 SPP2Q13103 211 aa9.39□□□□□ -0.91
LIMCH1-219ENST00000514096 APOBEC3FQ8IUX4 373 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-219ENST00000514096 TNS4Q8IZW8 715 aa9.39□□□□□ -0.91
LIMCH1-219ENST00000514096 LCORLQ8N3X6 602 aa9.39□□□□□ -0.91
LIMCH1-219ENST00000514096 NSUN4Q96CB9 384 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-219ENST00000514096 OPTNQ96CV9 577 aa9.39□□□□□ -0.91
LIMCH1-219ENST00000514096 PAGR1Q9BTK6 254 aa9.39□□□□□ -0.91
LIMCH1-219ENST00000514096 PICK1Q9NRD5 415 aa9.39□□□□□ -0.91
LIMCH1-219ENST00000514096 ECHDC1Q9NTX5 307 aa9.39□□□□□ -0.91
LIMCH1-219ENST00000514096 SMCR8Q8TEV9 937 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-219ENST00000514096 QSER1Q2KHR3 1735 aa9.39□□□□□ -0.91
LIMCH1-219ENST00000514096 ZC3H4Q9UPT8 1303 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-219ENST00000514096 DDX60Q8IY21 1712 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-219ENST00000514096 PDE6AP16499 860 aa9.39□□□□□ -0.91
LIMCH1-219ENST00000514096 ECE1P42892 770 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms