RNA–Protein interactions for RNA: ENST00000512665.5

NEDD9-213, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 761 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-213ENST00000512665 SOCS4Q8WXH5 440 aa12.59□□□□□ -0.39
NEDD9-213ENST00000512665 SPINK5Q9NQ38 1064 aaPredicted RBP12.59□□□□□ -0.39
NEDD9-213ENST00000512665 PTPRAP18433 802 aa12.58□□□□□ -0.4
NEDD9-213ENST00000512665 TMEM31Q5JXX7 168 aa12.58□□□□□ -0.4
NEDD9-213ENST00000512665 UBE3BQ7Z3V4 1068 aa12.58□□□□□ -0.4
NEDD9-213ENST00000512665 SCYL3Q8IZE3 742 aa12.58□□□□□ -0.4
NEDD9-213ENST00000512665 MAP3K2Q9Y2U5 619 aa12.58□□□□□ -0.4
NEDD9-213ENST00000512665 SUGT1Q9Y2Z0 365 aa12.58□□□□□ -0.4
NEDD9-213ENST00000512665 ZHX2Q9Y6X8 837 aa12.58□□□□□ -0.4
NEDD9-213ENST00000512665 CHD9Q3L8U1 2897 aa12.58□□□□□ -0.4
NEDD9-213ENST00000512665 MAST3O60307 1309 aa12.58□□□□□ -0.4
NEDD9-213ENST00000512665 ATRNL1Q5VV63 1379 aa12.57□□□□□ -0.4
NEDD9-213ENST00000512665 AK9Q5TCS8 1911 aa12.57□□□□□ -0.4
NEDD9-213ENST00000512665 ANKRD18BA2A2Z9 1011 aa12.57□□□□□ -0.4
NEDD9-213ENST00000512665 NEURL1BA8MQ27 555 aa12.57□□□□□ -0.4
NEDD9-213ENST00000512665 DNAJB2P25686 324 aa12.57□□□□□ -0.4
NEDD9-213ENST00000512665 CACNB2Q08289 660 aaPredicted RBP12.57□□□□□ -0.4
NEDD9-213ENST00000512665 NEXNQ0ZGT2 675 aa12.57□□□□□ -0.4
NEDD9-213ENST00000512665 KSR2Q6VAB6 950 aa12.57□□□□□ -0.4
NEDD9-213ENST00000512665 GADL1Q6ZQY3 521 aa12.57□□□□□ -0.4
NEDD9-213ENST00000512665 SENP6Q9GZR1 1112 aaPredicted RBP12.57□□□□□ -0.4
NEDD9-213ENST00000512665 ZNF576Q9H609 170 aa12.57□□□□□ -0.4
NEDD9-213ENST00000512665 PICK1Q9NRD5 415 aa12.57□□□□□ -0.4
NEDD9-213ENST00000512665 LOC285556D6RIA3 1793 aa12.56□□□□□ -0.4
NEDD9-213ENST00000512665 PHIPQ8WWQ0 1821 aa12.56□□□□□ -0.4
NEDD9-213ENST00000512665 PHF20L1A8MW92 1017 aa12.56□□□□□ -0.4
NEDD9-213ENST00000512665 DNM1LO00429 736 aa12.56□□□□□ -0.4
NEDD9-213ENST00000512665 GPR37L1O60883 481 aa12.56□□□□□ -0.4
NEDD9-213ENST00000512665 BMP1P13497 986 aa12.56□□□□□ -0.4
NEDD9-213ENST00000512665 ZKSCAN1P17029 563 aaPredicted RBP12.56□□□□□ -0.4
NEDD9-213ENST00000512665 HIBADHP31937 336 aaKnown RBP12.56□□□□□ -0.4
NEDD9-213ENST00000512665 CASP7P55210 303 aa12.56□□□□□ -0.4
NEDD9-213ENST00000512665 RTP1P59025 263 aa12.56□□□□□ -0.4
NEDD9-213ENST00000512665 GRIK5Q16478 980 aa12.56□□□□□ -0.4
NEDD9-213ENST00000512665 POTEEQ6S8J3 1075 aa12.56□□□□□ -0.4
NEDD9-213ENST00000512665 HHIPL2Q6UWX4 724 aa12.56□□□□□ -0.4
NEDD9-213ENST00000512665 PROCA1Q8NCQ7 364 aaPredicted RBP12.56□□□□□ -0.4
NEDD9-213ENST00000512665 GAS2L1Q99501 681 aaPredicted RBP12.56□□□□□ -0.4
NEDD9-213ENST00000512665 CHMP4AQ9BY43 222 aa12.56□□□□□ -0.4
NEDD9-213ENST00000512665 CXXC1Q9P0U4 656 aaPredicted RBP12.56□□□□□ -0.4
NEDD9-213ENST00000512665 MORF4L1Q9UBU8 362 aa12.56□□□□□ -0.4
NEDD9-213ENST00000512665 MSCO60682 206 aa12.55□□□□□ -0.4
NEDD9-213ENST00000512665 UBE4AQ14139 1066 aa12.55□□□□□ -0.4
NEDD9-213ENST00000512665 SNX17Q15036 470 aa12.55□□□□□ -0.4
NEDD9-213ENST00000512665 BADQ92934 168 aa12.55□□□□□ -0.4
NEDD9-213ENST00000512665 RNPC3Q96LT9 517 aaKnown RBP12.55□□□□□ -0.4
NEDD9-213ENST00000512665 NUDT12Q9BQG2 462 aa12.55□□□□□ -0.4
NEDD9-213ENST00000512665 DOCK1Q14185 1865 aa12.55□□□□□ -0.4
NEDD9-213ENST00000512665 RLFQ13129 1914 aa12.54□□□□□ -0.4
NEDD9-213ENST00000512665 PI4KAP2A4QPH2 592 aa12.54□□□□□ -0.4
NEDD9-213ENST00000512665 MRE11P49959 708 aa12.54□□□□□ -0.4
NEDD9-213ENST00000512665 IFIT5Q13325 482 aaKnown RBP12.54□□□□□ -0.4
NEDD9-213ENST00000512665 CWF19L2Q2TBE0 894 aaKnown RBP12.54□□□□□ -0.4
NEDD9-213ENST00000512665 PI4KAP1Q8N8J0 262 aa12.54□□□□□ -0.4
NEDD9-213ENST00000512665 USP6NLQ92738 828 aa12.54□□□□□ -0.4
NEDD9-213ENST00000512665 FAM84BQ96KN1 310 aaPredicted RBP12.54□□□□□ -0.4
NEDD9-213ENST00000512665 DOCK2Q92608 1830 aa12.53□□□□□ -0.4
NEDD9-213ENST00000512665 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.53□□□□□ -0.4
NEDD9-213ENST00000512665 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.53□□□□□ -0.4
NEDD9-213ENST00000512665 CYP2B6P20813 491 aa12.53□□□□□ -0.4
NEDD9-213ENST00000512665 CCND3P30281 292 aaPredicted RBP12.53□□□□□ -0.4
NEDD9-213ENST00000512665 GYG1P46976 350 aa12.53□□□□□ -0.4
NEDD9-213ENST00000512665 MAP3K10Q02779 954 aa12.53□□□□□ -0.4
NEDD9-213ENST00000512665 PABPC4Q13310 644 aaKnown RBP eCLIP12.53□□□□□ -0.4
NEDD9-213ENST00000512665 GCKRQ14397 625 aa12.53□□□□□ -0.4
NEDD9-213ENST00000512665 PDE3AQ14432 1141 aa12.53□□□□□ -0.4
NEDD9-213ENST00000512665 AAK1Q2M2I8 961 aa12.53□□□□□ -0.4
NEDD9-213ENST00000512665 C1orf53Q5VUE5 145 aa12.53□□□□□ -0.4
NEDD9-213ENST00000512665 LPAR1Q92633 364 aa12.53□□□□□ -0.4
NEDD9-213ENST00000512665 TIFAQ96CG3 184 aa12.53□□□□□ -0.4
NEDD9-213ENST00000512665 NECAB3Q96P71 396 aaPredicted RBP12.53□□□□□ -0.4
NEDD9-213ENST00000512665 EPHX3Q9H6B9 360 aa12.53□□□□□ -0.4
NEDD9-213ENST00000512665 PDLIM7Q9NR12 457 aa12.53□□□□□ -0.4
NEDD9-213ENST00000512665 LAS1LQ9Y4W2 734 aaKnown RBP12.53□□□□□ -0.4
NEDD9-213ENST00000512665 REV3LO60673 3130 aa12.53□□□□□ -0.4
NEDD9-213ENST00000512665 ATN1P54259 1190 aaPredicted RBP12.52□□□□□ -0.41
NEDD9-213ENST00000512665 TREML2Q5T2D2 321 aa12.52□□□□□ -0.41
NEDD9-213ENST00000512665 TSPYL2Q9H2G4 693 aaPredicted RBP12.52□□□□□ -0.41
NEDD9-213ENST00000512665 C11orf16Q9NQ32 467 aa12.52□□□□□ -0.41
NEDD9-213ENST00000512665 TRIM35Q9UPQ4 493 aa12.52□□□□□ -0.41
NEDD9-213ENST00000512665 CHD7Q9P2D1 2997 aa12.51□□□□□ -0.41
NEDD9-213ENST00000512665 TRIM75PA6NK02 468 aa12.51□□□□□ -0.41
NEDD9-213ENST00000512665 CTNND1O60716 968 aaKnown RBP12.51□□□□□ -0.41
NEDD9-213ENST00000512665 FBXO33Q7Z6M2 555 aa12.51□□□□□ -0.41
NEDD9-213ENST00000512665 APBA2Q99767 749 aa12.51□□□□□ -0.41
NEDD9-213ENST00000512665 MBIPQ9NS73 344 aa12.51□□□□□ -0.41
NEDD9-213ENST00000512665 DDX20Q9UHI6 824 aaKnown RBP12.51□□□□□ -0.41
NEDD9-213ENST00000512665 ATP11BQ9Y2G3 1177 aa12.51□□□□□ -0.41
NEDD9-213ENST00000512665 MAPK4P31152 587 aa12.5□□□□□ -0.41
NEDD9-213ENST00000512665 RGS2P41220 211 aa12.5□□□□□ -0.41
NEDD9-213ENST00000512665 CCDC30Q5VVM6 783 aa12.5□□□□□ -0.41
NEDD9-213ENST00000512665 SLC39A5Q6ZMH5 540 aa12.5□□□□□ -0.41
NEDD9-213ENST00000512665 PPM1EQ8WY54 764 aa12.5□□□□□ -0.41
NEDD9-213ENST00000512665 TBC1D2Q9BYX2 928 aa12.5□□□□□ -0.41
NEDD9-213ENST00000512665 ASCC2Q9H1I8 757 aaPredicted RBP12.5□□□□□ -0.41
NEDD9-213ENST00000512665 PRDM5Q9NQX1 630 aaPredicted RBP12.5□□□□□ -0.41
NEDD9-213ENST00000512665 UTYO14607 1347 aa12.5□□□□□ -0.41
NEDD9-213ENST00000512665 MYBBP1AQ9BQG0 1328 aaKnown RBP12.49□□□□□ -0.41
NEDD9-213ENST00000512665 TRIM43BA6NCK2 446 aa12.49□□□□□ -0.41
NEDD9-213ENST00000512665 ZNF853P0CG23 659 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms