RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 MCAMP43121 646 aa26.57■■□□□ 1.84
USP40-215ENST00000484528 OS9Q13438 667 aaPredicted RBP26.57■■□□□ 1.84
USP40-215ENST00000484528 POLA2Q14181 598 aa26.57■■□□□ 1.84
USP40-215ENST00000484528 CENPFP49454 3210 aa26.56■■□□□ 1.84
USP40-215ENST00000484528 DDTLA6NHG4 134 aaPredicted RBP26.56■■□□□ 1.84
USP40-215ENST00000484528 ECM2O94769 699 aaPredicted RBP26.56■■□□□ 1.84
USP40-215ENST00000484528 NOL9Q5SY16 702 aaKnown RBP26.56■■□□□ 1.84
USP40-215ENST00000484528 FAM163AQ96GL9 167 aaPredicted RBP26.56■■□□□ 1.84
USP40-215ENST00000484528 RAI14Q9P0K7 980 aa26.56■■□□□ 1.84
USP40-215ENST00000484528 PTPRFP10586 1907 aa26.56■■□□□ 1.84
USP40-215ENST00000484528 MAST2Q6P0Q8 1798 aa26.56■■□□□ 1.84
USP40-215ENST00000484528 TLR2O60603 784 aa26.55■■□□□ 1.84
USP40-215ENST00000484528 SSH3Q8TE77 659 aa26.55■■□□□ 1.84
USP40-215ENST00000484528 ARHGAP39Q9C0H5 1083 aa26.55■■□□□ 1.84
USP40-215ENST00000484528 ZCCHC17Q9NP64 241 aaKnown RBP26.55■■□□□ 1.84
USP40-215ENST00000484528 KCNH4Q9UQ05 1017 aa26.55■■□□□ 1.84
USP40-215ENST00000484528 RBBP6Q7Z6E9 1792 aaKnown RBP26.55■■□□□ 1.84
USP40-215ENST00000484528 PHIPQ8WWQ0 1821 aa26.54■■□□□ 1.84
USP40-215ENST00000484528 GPR75-ASB3A0A0A6YYF3 556 aa26.54■■□□□ 1.84
USP40-215ENST00000484528 RHBDL3P58872 404 aa26.54■■□□□ 1.84
USP40-215ENST00000484528 ATP8B2P98198 1209 aa26.54■■□□□ 1.84
USP40-215ENST00000484528 NSUN4Q96CB9 384 aaKnown RBP26.54■■□□□ 1.84
USP40-215ENST00000484528 DBNDD2Q9BQY9 259 aa26.54■■□□□ 1.84
USP40-215ENST00000484528 SNRKQ9NRH2 765 aa26.54■■□□□ 1.84
USP40-215ENST00000484528 PHF20L1A8MW92 1017 aa26.53■■□□□ 1.84
USP40-215ENST00000484528 SURF6O75683 361 aaKnown RBP26.53■■□□□ 1.84
USP40-215ENST00000484528 TNNI3KQ59H18 835 aa26.53■■□□□ 1.84
USP40-215ENST00000484528 PTCH2Q9Y6C5 1203 aa26.53■■□□□ 1.84
USP40-215ENST00000484528 FPGT-TNNI3KV9GXZ4 949 aa26.53■■□□□ 1.84
USP40-215ENST00000484528 POTEFA5A3E0 1075 aa26.52■■□□□ 1.84
USP40-215ENST00000484528 PDHXO00330 501 aa26.52■■□□□ 1.84
USP40-215ENST00000484528 UQCRFS1P1P0C7P4 283 aa26.52■■□□□ 1.84
USP40-215ENST00000484528 TTC39AQ5SRH9 613 aa26.52■■□□□ 1.84
USP40-215ENST00000484528 ZBED9Q6R2W3 1325 aa26.52■■□□□ 1.84
USP40-215ENST00000484528 ANKRD23Q86SG2 305 aa26.52■■□□□ 1.84
USP40-215ENST00000484528 SCYL3Q8IZE3 742 aa26.52■■□□□ 1.84
USP40-215ENST00000484528 CDK5RAP2Q96SN8 1893 aa26.52■■□□□ 1.84
USP40-215ENST00000484528 CPA4Q9UI42 421 aa26.52■■□□□ 1.84
USP40-215ENST00000484528 ATAD5Q96QE3 1844 aa26.51■■□□□ 1.83
USP40-215ENST00000484528 GSTO1P78417 241 aa26.51■■□□□ 1.83
USP40-215ENST00000484528 LACTBP83111 547 aaPredicted RBP26.51■■□□□ 1.83
USP40-215ENST00000484528 MOGSQ13724 837 aa26.51■■□□□ 1.83
USP40-215ENST00000484528 PICK1Q9NRD5 415 aa26.51■■□□□ 1.83
USP40-215ENST00000484528 LRP2BPQ9P2M1 347 aa26.51■■□□□ 1.83
USP40-215ENST00000484528 FRMD4AQ9P2Q2 1039 aaPredicted RBP26.51■■□□□ 1.83
USP40-215ENST00000484528 FAM196BA6NMK8 535 aa26.5■■□□□ 1.83
USP40-215ENST00000484528 ZBTB7BO15156 539 aaPredicted RBP26.5■■□□□ 1.83
USP40-215ENST00000484528 LDHCP07864 332 aa26.5■■□□□ 1.83
USP40-215ENST00000484528 ARHGEF6Q15052 776 aa26.5■■□□□ 1.83
USP40-215ENST00000484528 ARMC5Q96C12 935 aa26.5■■□□□ 1.83
USP40-215ENST00000484528 GPR108Q9NPR9 543 aa26.5■■□□□ 1.83
USP40-215ENST00000484528 ZHX2Q9Y6X8 837 aa26.5■■□□□ 1.83
USP40-215ENST00000484528 KIF22Q14807 665 aa26.49■■□□□ 1.83
USP40-215ENST00000484528 PTPRAP18433 802 aa26.48■■□□□ 1.83
USP40-215ENST00000484528 CCDC158Q5M9N0 1113 aa26.48■■□□□ 1.83
USP40-215ENST00000484528 CCDC84Q86UT8 332 aaPredicted RBP26.48■■□□□ 1.83
USP40-215ENST00000484528 PANK1Q8TE04 598 aa26.48■■□□□ 1.83
USP40-215ENST00000484528 ADGRA2Q96PE1 1338 aa26.47■■□□□ 1.83
USP40-215ENST00000484528 CXCL11O14625 94 aa26.47■■□□□ 1.83
USP40-215ENST00000484528 MAP3K10Q02779 954 aa26.47■■□□□ 1.83
USP40-215ENST00000484528 SLC9C1Q4G0N8 1177 aa26.47■■□□□ 1.83
USP40-215ENST00000484528 C17orf99Q6UX52 265 aa26.47■■□□□ 1.83
USP40-215ENST00000484528 TEX11Q8IYF3 940 aa26.47■■□□□ 1.83
USP40-215ENST00000484528 TLR7Q9NYK1 1049 aaKnown RBP26.47■■□□□ 1.83
USP40-215ENST00000484528 MGAMO43451 1857 aa26.47■■□□□ 1.83
USP40-215ENST00000484528 SIPA1L1O43166 1804 aa26.46■■□□□ 1.83
USP40-215ENST00000484528 GPAT2Q6NUI2 795 aa26.46■■□□□ 1.83
USP40-215ENST00000484528 SH3RF3Q8TEJ3 882 aaPredicted RBP26.46■■□□□ 1.83
USP40-215ENST00000484528 DBNLQ9UJU6 430 aaKnown RBP26.46■■□□□ 1.83
USP40-215ENST00000484528 FOCADQ5VW36 1801 aa26.46■■□□□ 1.83
USP40-215ENST00000484528 CTNND1O60716 968 aaKnown RBP26.45■■□□□ 1.82
USP40-215ENST00000484528 MYCP01106 439 aaPredicted RBP26.45■■□□□ 1.82
USP40-215ENST00000484528 CYP2C8P10632 490 aa26.45■■□□□ 1.82
USP40-215ENST00000484528 CTGFP29279 349 aa26.45■■□□□ 1.82
USP40-215ENST00000484528 GADL1Q6ZQY3 521 aa26.45■■□□□ 1.82
USP40-215ENST00000484528 ZNF333Q96JL9 665 aa26.45■■□□□ 1.82
USP40-215ENST00000484528 CCDC8Q9H0W5 538 aaPredicted RBP26.45■■□□□ 1.82
USP40-215ENST00000484528 OSBPL5Q9H0X9 879 aaPredicted RBP26.45■■□□□ 1.82
USP40-215ENST00000484528 NOP58Q9Y2X3 529 aaKnown RBP26.45■■□□□ 1.82
USP40-215ENST00000484528 TRIM75PA6NK02 468 aa26.44■■□□□ 1.82
USP40-215ENST00000484528 CYP2E1P05181 493 aaPredicted RBP26.44■■□□□ 1.82
USP40-215ENST00000484528 NAA16Q6N069 864 aaPredicted RBP26.44■■□□□ 1.82
USP40-215ENST00000484528 CEP85Q6P2H3 762 aa26.44■■□□□ 1.82
USP40-215ENST00000484528 PARK7Q99497 189 aaKnown RBP26.44■■□□□ 1.82
USP40-215ENST00000484528 NOL10Q9BSC4 688 aaKnown RBP26.44■■□□□ 1.82
USP40-215ENST00000484528 XPO5Q9HAV4 1204 aaKnown RBP eCLIP26.44■■□□□ 1.82
USP40-215ENST00000484528 AATFQ9NY61 560 aaKnown RBP eCLIP26.44■■□□□ 1.82
USP40-215ENST00000484528 AFG3L2Q9Y4W6 797 aa26.44■■□□□ 1.82
USP40-215ENST00000484528 COL2A1P02458 1487 aaPredicted RBP26.43■■□□□ 1.82
USP40-215ENST00000484528 A0A0G2JLL6 359 aaPredicted RBP26.43■■□□□ 1.82
USP40-215ENST00000484528 NPM3O75607 178 aaKnown RBP26.43■■□□□ 1.82
USP40-215ENST00000484528 ZAP70P43403 619 aa26.43■■□□□ 1.82
USP40-215ENST00000484528 PRRT2Q7Z6L0 340 aaPredicted RBP26.43■■□□□ 1.82
USP40-215ENST00000484528 SH3TC2Q8TF17 1288 aa26.43■■□□□ 1.82
USP40-215ENST00000484528 BRCA2P51587 3418 aa26.42■■□□□ 1.82
USP40-215ENST00000484528 MAP4K4O95819 1239 aaPredicted RBP26.42■■□□□ 1.82
USP40-215ENST00000484528 EN2P19622 333 aaPredicted RBP26.42■■□□□ 1.82
USP40-215ENST00000484528 PSMC4P43686 418 aa26.42■■□□□ 1.82
USP40-215ENST00000484528 ADGRA1Q86SQ6 560 aa26.42■■□□□ 1.82
USP40-215ENST00000484528 EAF2Q96CJ1 260 aaPredicted RBP26.42■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms