RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 THSD7BQ9C0I4 1608 aa11.76□□□□□ -0.53
HDAC3-208ENST00000476739 PPP1R12BO60237 982 aaPredicted RBP11.76□□□□□ -0.53
HDAC3-208ENST00000476739 IGSF3O75054 1194 aa11.76□□□□□ -0.53
HDAC3-208ENST00000476739 ENTPD3O75355 529 aa11.76□□□□□ -0.53
HDAC3-208ENST00000476739 BAG3O95817 575 aa11.76□□□□□ -0.53
HDAC3-208ENST00000476739 SLC10A3P09131 477 aa11.76□□□□□ -0.53
HDAC3-208ENST00000476739 ADD2P35612 726 aa11.76□□□□□ -0.53
HDAC3-208ENST00000476739 ECE1P42892 770 aa11.76□□□□□ -0.53
HDAC3-208ENST00000476739 PDE1AP54750 535 aa11.76□□□□□ -0.53
HDAC3-208ENST00000476739 GPATCH3Q96I76 525 aa11.76□□□□□ -0.53
HDAC3-208ENST00000476739 RIOK1Q9BRS2 568 aaKnown RBP11.76□□□□□ -0.53
HDAC3-208ENST00000476739 FOCADQ5VW36 1801 aa11.76□□□□□ -0.53
HDAC3-208ENST00000476739 ATRNL1Q5VV63 1379 aa11.76□□□□□ -0.53
HDAC3-208ENST00000476739 MYH7P12883 1935 aa11.76□□□□□ -0.53
HDAC3-208ENST00000476739 MKRN3Q13064 507 aaKnown RBP11.75□□□□□ -0.53
HDAC3-208ENST00000476739 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.75□□□□□ -0.53
HDAC3-208ENST00000476739 MAPKAPK5Q8IW41 473 aa11.75□□□□□ -0.53
HDAC3-208ENST00000476739 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.75□□□□□ -0.53
HDAC3-208ENST00000476739 CSRNP1Q96S65 589 aa11.75□□□□□ -0.53
HDAC3-208ENST00000476739 NOL10Q9BSC4 688 aaKnown RBP11.75□□□□□ -0.53
HDAC3-208ENST00000476739 OSBPL5Q9H0X9 879 aaPredicted RBP11.75□□□□□ -0.53
HDAC3-208ENST00000476739 ZBTB47Q9UFB7 747 aaPredicted RBP11.75□□□□□ -0.53
HDAC3-208ENST00000476739 STAP2Q9UGK3 403 aa11.75□□□□□ -0.53
HDAC3-208ENST00000476739 FLT1P17948 1338 aa11.75□□□□□ -0.53
HDAC3-208ENST00000476739 SIPA1L1O43166 1804 aa11.74□□□□□ -0.53
HDAC3-208ENST00000476739 FAM196BA6NMK8 535 aa11.74□□□□□ -0.53
HDAC3-208ENST00000476739 NPM3O75607 178 aaKnown RBP11.74□□□□□ -0.53
HDAC3-208ENST00000476739 GLRX3O76003 335 aaKnown RBP11.74□□□□□ -0.53
HDAC3-208ENST00000476739 PDE4AP27815 886 aa11.74□□□□□ -0.53
HDAC3-208ENST00000476739 GJA5P36382 358 aa11.74□□□□□ -0.53
HDAC3-208ENST00000476739 IREB2P48200 963 aaKnown RBP11.74□□□□□ -0.53
HDAC3-208ENST00000476739 PLEKHM2Q8IWE5 1019 aa11.74□□□□□ -0.53
HDAC3-208ENST00000476739 ZSCAN29Q8IWY8 852 aaPredicted RBP11.74□□□□□ -0.53
HDAC3-208ENST00000476739 LCORLQ8N3X6 602 aa11.74□□□□□ -0.53
HDAC3-208ENST00000476739 KBTBD3Q8NAB2 608 aa11.74□□□□□ -0.53
HDAC3-208ENST00000476739 CNKSR2Q8WXI2 1034 aa11.74□□□□□ -0.53
HDAC3-208ENST00000476739 ZKSCAN4Q969J2 545 aaPredicted RBP11.74□□□□□ -0.53
HDAC3-208ENST00000476739 CCDC102AQ96A19 550 aa11.74□□□□□ -0.53
HDAC3-208ENST00000476739 MAGEB6P1A0A0J9YX57 407 aa11.73□□□□□ -0.53
HDAC3-208ENST00000476739 ERC2O15083 957 aa11.73□□□□□ -0.53
HDAC3-208ENST00000476739 PLCG2P16885 1265 aa11.73□□□□□ -0.53
HDAC3-208ENST00000476739 INPP5BP32019 993 aa11.73□□□□□ -0.53
HDAC3-208ENST00000476739 MAP2K2P36507 400 aa11.73□□□□□ -0.53
HDAC3-208ENST00000476739 MAP3K9P80192 1104 aa11.73□□□□□ -0.53
HDAC3-208ENST00000476739 KIF23Q02241 960 aaPredicted RBP11.73□□□□□ -0.53
HDAC3-208ENST00000476739 VGLL4Q14135 290 aa11.73□□□□□ -0.53
HDAC3-208ENST00000476739 UBE3CQ15386 1083 aa11.73□□□□□ -0.53
HDAC3-208ENST00000476739 SLC4A8Q2Y0W8 1093 aa11.73□□□□□ -0.53
HDAC3-208ENST00000476739 DCAF15Q66K64 600 aa11.73□□□□□ -0.53
HDAC3-208ENST00000476739 ANKRD13AQ8IZ07 590 aa11.73□□□□□ -0.53
HDAC3-208ENST00000476739 WRNIP1Q96S55 665 aa11.73□□□□□ -0.53
HDAC3-208ENST00000476739 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.73□□□□□ -0.539e-8■■■■■ 30.8
HDAC3-208ENST00000476739 PUS7LQ9H0K6 701 aaKnown RBP11.73□□□□□ -0.53
HDAC3-208ENST00000476739 ARMT1Q9H993 441 aa11.73□□□□□ -0.53
HDAC3-208ENST00000476739 ELP3Q9H9T3 547 aa11.73□□□□□ -0.53
HDAC3-208ENST00000476739 SAP30BPQ9UHR5 308 aaKnown RBP11.73□□□□□ -0.53
HDAC3-208ENST00000476739 PALD1Q9ULE6 856 aa11.73□□□□□ -0.53
HDAC3-208ENST00000476739 PCNTO95613 3336 aa11.72□□□□□ -0.53
HDAC3-208ENST00000476739 PHF20L1A8MW92 1017 aa11.72□□□□□ -0.53
HDAC3-208ENST00000476739 PRKAB2O43741 272 aa11.72□□□□□ -0.53
HDAC3-208ENST00000476739 HSPA1AP0DMV8 641 aaKnown RBP11.72□□□□□ -0.53
HDAC3-208ENST00000476739 HSPA1BP0DMV9 641 aaKnown RBP11.72□□□□□ -0.53
HDAC3-208ENST00000476739 EVX2Q03828 476 aa11.72□□□□□ -0.53
HDAC3-208ENST00000476739 NOGQ13253 232 aa11.72□□□□□ -0.53
HDAC3-208ENST00000476739 SPRYD7Q5W111 196 aa11.72□□□□□ -0.53
HDAC3-208ENST00000476739 TMED8Q6PL24 325 aaPredicted RBP11.72□□□□□ -0.53
HDAC3-208ENST00000476739 SDR42E1Q8WUS8 393 aa11.72□□□□□ -0.53
HDAC3-208ENST00000476739 SLC10A4Q96EP9 437 aa11.72□□□□□ -0.53
HDAC3-208ENST00000476739 WNK4Q96J92 1243 aa11.72□□□□□ -0.53
HDAC3-208ENST00000476739 ZNF341Q9BYN7 854 aa11.72□□□□□ -0.53
HDAC3-208ENST00000476739 WBP1LQ9NX94 342 aa11.72□□□□□ -0.53
HDAC3-208ENST00000476739 ZNF112Q9UJU3 913 aa11.72□□□□□ -0.53
HDAC3-208ENST00000476739 SNCAIPQ9Y6H5 919 aa11.72□□□□□ -0.53
HDAC3-208ENST00000476739 MYH1P12882 1939 aa11.72□□□□□ -0.53
HDAC3-208ENST00000476739 COL2A1P02458 1487 aaPredicted RBP11.71□□□□□ -0.53
HDAC3-208ENST00000476739 M0R2C6 588 aa11.71□□□□□ -0.53
HDAC3-208ENST00000476739 RNF113AO15541 343 aaKnown RBP11.71□□□□□ -0.53
HDAC3-208ENST00000476739 MBD4O95243 580 aa11.71□□□□□ -0.53
HDAC3-208ENST00000476739 USP5P45974 858 aa11.71□□□□□ -0.53
HDAC3-208ENST00000476739 MAP3K10Q02779 954 aa11.71□□□□□ -0.53
HDAC3-208ENST00000476739 RRP1BQ14684 758 aaKnown RBP11.71□□□□□ -0.53
HDAC3-208ENST00000476739 OSBP2Q969R2 916 aa11.71□□□□□ -0.53
HDAC3-208ENST00000476739 OPTNQ96CV9 577 aa11.71□□□□□ -0.53
HDAC3-208ENST00000476739 HOOK2Q96ED9 719 aa11.71□□□□□ -0.53
HDAC3-208ENST00000476739 SEC62Q99442 399 aaKnown RBP11.71□□□□□ -0.53
HDAC3-208ENST00000476739 DNAJC18Q9H819 358 aa11.71□□□□□ -0.53
HDAC3-208ENST00000476739 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.71□□□□□ -0.53
HDAC3-208ENST00000476739 DDX60LQ5H9U9 1706 aaKnown RBP11.71□□□□□ -0.54
HDAC3-208ENST00000476739 UNCXA6NJT0 531 aa11.7□□□□□ -0.54
HDAC3-208ENST00000476739 SMIM22K7EJ46 135 aa11.7□□□□□ -0.54
HDAC3-208ENST00000476739 FOXN1O15353 648 aa11.7□□□□□ -0.54
HDAC3-208ENST00000476739 ZSCAN25Q6NSZ9 544 aa11.7□□□□□ -0.54
HDAC3-208ENST00000476739 SKAP1Q86WV1 359 aa11.7□□□□□ -0.54
HDAC3-208ENST00000476739 FSD1Q9BTV5 496 aa11.7□□□□□ -0.54
HDAC3-208ENST00000476739 OSBPL3Q9H4L5 887 aa11.7□□□□□ -0.54
HDAC3-208ENST00000476739 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.7□□□□□ -0.54
HDAC3-208ENST00000476739 CSADQ9Y600 493 aa11.7□□□□□ -0.54
HDAC3-208ENST00000476739 NAV1Q8NEY1 1877 aa11.7□□□□□ -0.54
HDAC3-208ENST00000476739 TBC1D12O60347 775 aa11.69□□□□□ -0.54
HDAC3-208ENST00000476739 CYP2D6P10635 497 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms