RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 SPATA5Q8NB90 893 aa21.57■■□□□ 1.04
COL7A1-208ENST00000470076 PTCH2Q9Y6C5 1203 aa21.57■■□□□ 1.04
COL7A1-208ENST00000470076 MKI67P46013 3256 aaKnown RBP21.56■■□□□ 1.04
COL7A1-208ENST00000470076 GPR75-ASB3A0A0A6YYF3 556 aa21.56■■□□□ 1.04
COL7A1-208ENST00000470076 PHF20L1A8MW92 1017 aa21.56■■□□□ 1.04
COL7A1-208ENST00000470076 PDHXO00330 501 aa21.56■■□□□ 1.04
COL7A1-208ENST00000470076 ARID4AP29374 1257 aaPredicted RBP21.56■■□□□ 1.04
COL7A1-208ENST00000470076 GSTO1P78417 241 aa21.56■■□□□ 1.04
COL7A1-208ENST00000470076 C17orf99Q6UX52 265 aa21.56■■□□□ 1.04
COL7A1-208ENST00000470076 SH3BP5LQ7L8J4 393 aa21.56■■□□□ 1.04
COL7A1-208ENST00000470076 SCYL3Q8IZE3 742 aa21.56■■□□□ 1.04
COL7A1-208ENST00000470076 TMEM57Q8N5G2 664 aa21.56■■□□□ 1.04
COL7A1-208ENST00000470076 ZNF333Q96JL9 665 aa21.56■■□□□ 1.04
COL7A1-208ENST00000470076 NPM3O75607 178 aaKnown RBP21.55■■□□□ 1.04
COL7A1-208ENST00000470076 MAP4K4O95819 1239 aaPredicted RBP21.55■■□□□ 1.04
COL7A1-208ENST00000470076 LDHCP07864 332 aa21.55■■□□□ 1.04
COL7A1-208ENST00000470076 PRMT2P55345 433 aa21.55■■□□□ 1.04
COL7A1-208ENST00000470076 MOGSQ13724 837 aa21.55■■□□□ 1.04
COL7A1-208ENST00000470076 TMEM106CQ9BVX2 250 aa21.55■■□□□ 1.04
COL7A1-208ENST00000470076 DDX4Q9NQI0 724 aaKnown RBP21.55■■□□□ 1.04
COL7A1-208ENST00000470076 PICK1Q9NRD5 415 aa21.55■■□□□ 1.04
COL7A1-208ENST00000470076 BRCA2P51587 3418 aa21.54■■□□□ 1.04
COL7A1-208ENST00000470076 DDTLA6NHG4 134 aaPredicted RBP21.54■■□□□ 1.04
COL7A1-208ENST00000470076 UQCRFS1P1P0C7P4 283 aa21.54■■□□□ 1.04
COL7A1-208ENST00000470076 RHBDL3P58872 404 aa21.54■■□□□ 1.04
COL7A1-208ENST00000470076 PICALMQ13492 652 aa21.54■■□□□ 1.04
COL7A1-208ENST00000470076 PI16Q6UXB8 463 aa21.54■■□□□ 1.04
COL7A1-208ENST00000470076 ZNF384Q8TF68 577 aa21.54■■□□□ 1.04
COL7A1-208ENST00000470076 NSUN4Q96CB9 384 aaKnown RBP21.54■■□□□ 1.04
COL7A1-208ENST00000470076 ARHGAP39Q9C0H5 1083 aa21.54■■□□□ 1.04
COL7A1-208ENST00000470076 ZSWIM8A7E2V4 1837 aa21.54■■□□□ 1.04
COL7A1-208ENST00000470076 HNRNPUQ00839 825 aaKnown RBP eCLIP21.53■■□□□ 1.04
COL7A1-208ENST00000470076 POLA2Q14181 598 aa21.53■■□□□ 1.04
COL7A1-208ENST00000470076 PARK7Q99497 189 aaKnown RBP21.53■■□□□ 1.04
COL7A1-208ENST00000470076 GPR108Q9NPR9 543 aa21.53■■□□□ 1.04
COL7A1-208ENST00000470076 CPA4Q9UI42 421 aa21.53■■□□□ 1.04
COL7A1-208ENST00000470076 ZHX2Q9Y6X8 837 aa21.53■■□□□ 1.04
COL7A1-208ENST00000470076 ADGRA2Q96PE1 1338 aa21.53■■□□□ 1.04
COL7A1-208ENST00000470076 DOCK1Q14185 1865 aa21.52■■□□□ 1.04
COL7A1-208ENST00000470076 CTNND1O60716 968 aaKnown RBP21.52■■□□□ 1.04
COL7A1-208ENST00000470076 PTPRAP18433 802 aa21.52■■□□□ 1.04
COL7A1-208ENST00000470076 MCAMP43121 646 aa21.52■■□□□ 1.04
COL7A1-208ENST00000470076 TBC1D9Q6ZT07 1266 aa21.52■■□□□ 1.04
COL7A1-208ENST00000470076 FASTKD5Q7L8L6 764 aaKnown RBP21.52■■□□□ 1.04
COL7A1-208ENST00000470076 SSH3Q8TE77 659 aa21.52■■□□□ 1.04
COL7A1-208ENST00000470076 RAI14Q9P0K7 980 aa21.52■■□□□ 1.04
COL7A1-208ENST00000470076 A0A0G2JLL6 359 aaPredicted RBP21.51■■□□□ 1.03
COL7A1-208ENST00000470076 TBC1D12O60347 775 aa21.51■■□□□ 1.03
COL7A1-208ENST00000470076 GPAT2Q6NUI2 795 aa21.51■■□□□ 1.03
COL7A1-208ENST00000470076 PRRT2Q7Z6L0 340 aaPredicted RBP21.51■■□□□ 1.03
COL7A1-208ENST00000470076 AFG3L2Q9Y4W6 797 aa21.51■■□□□ 1.03
COL7A1-208ENST00000470076 COL2A1P02458 1487 aaPredicted RBP21.51■■□□□ 1.03
COL7A1-208ENST00000470076 EN2P19622 333 aaPredicted RBP21.5■■□□□ 1.03
COL7A1-208ENST00000470076 HOXD10P28358 340 aa21.5■■□□□ 1.03
COL7A1-208ENST00000470076 PSMC4P43686 418 aa21.5■■□□□ 1.03
COL7A1-208ENST00000470076 ATP8B2P98198 1209 aa21.5■■□□□ 1.03
COL7A1-208ENST00000470076 OS9Q13438 667 aaPredicted RBP21.5■■□□□ 1.03
COL7A1-208ENST00000470076 FTSJ3Q8IY81 847 aaKnown RBP21.5■■□□□ 1.03
COL7A1-208ENST00000470076 LRP2BPQ9P2M1 347 aa21.5■■□□□ 1.03
COL7A1-208ENST00000470076 PTPRFP10586 1907 aa21.5■■□□□ 1.03
COL7A1-208ENST00000470076 TNNI3KQ59H18 835 aa21.49■■□□□ 1.03
COL7A1-208ENST00000470076 CCDC158Q5M9N0 1113 aa21.49■■□□□ 1.03
COL7A1-208ENST00000470076 TRIM47Q96LD4 638 aa21.49■■□□□ 1.03
COL7A1-208ENST00000470076 SRRDQ9UH36 339 aa21.49■■□□□ 1.03
COL7A1-208ENST00000470076 FPGT-TNNI3KV9GXZ4 949 aa21.49■■□□□ 1.03
COL7A1-208ENST00000470076 PHIPQ8WWQ0 1821 aa21.49■■□□□ 1.03
COL7A1-208ENST00000470076 SURF6O75683 361 aaKnown RBP21.48■■□□□ 1.03
COL7A1-208ENST00000470076 SLURP2P0DP57 97 aa21.48■■□□□ 1.03
COL7A1-208ENST00000470076 CTGFP29279 349 aa21.48■■□□□ 1.03
COL7A1-208ENST00000470076 SLC4A8Q2Y0W8 1093 aa21.48■■□□□ 1.03
COL7A1-208ENST00000470076 TTC39AQ5SRH9 613 aa21.48■■□□□ 1.03
COL7A1-208ENST00000470076 MIER1Q8N108 512 aa21.48■■□□□ 1.03
COL7A1-208ENST00000470076 SH3TC2Q8TF17 1288 aa21.48■■□□□ 1.03
COL7A1-208ENST00000470076 NOL10Q9BSC4 688 aaKnown RBP21.48■■□□□ 1.03
COL7A1-208ENST00000470076 SLC45A1Q9Y2W3 748 aa21.48■■□□□ 1.03
COL7A1-208ENST00000470076 FMNL1O95466 1100 aaPredicted RBP21.47■■□□□ 1.03
COL7A1-208ENST00000470076 CYP2C8P10632 490 aa21.47■■□□□ 1.03
COL7A1-208ENST00000470076 BCRP11274 1271 aa21.47■■□□□ 1.03
COL7A1-208ENST00000470076 GADL1Q6ZQY3 521 aa21.47■■□□□ 1.03
COL7A1-208ENST00000470076 OSBPL5Q9H0X9 879 aaPredicted RBP21.47■■□□□ 1.03
COL7A1-208ENST00000470076 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.47■■□□□ 1.03
COL7A1-208ENST00000470076 MAST2Q6P0Q8 1798 aa21.46■■□□□ 1.03
COL7A1-208ENST00000470076 IGSF3O75054 1194 aa21.46■■□□□ 1.03
COL7A1-208ENST00000470076 ECM2O94769 699 aaPredicted RBP21.46■■□□□ 1.03
COL7A1-208ENST00000470076 OSBPP22059 807 aa21.46■■□□□ 1.03
COL7A1-208ENST00000470076 ITPRIPQ8IWB1 547 aa21.46■■□□□ 1.03
COL7A1-208ENST00000470076 TEX11Q8IYF3 940 aa21.46■■□□□ 1.03
COL7A1-208ENST00000470076 ZNF512BQ96KM6 892 aaPredicted RBP21.46■■□□□ 1.03
COL7A1-208ENST00000470076 DBNDD2Q9BQY9 259 aa21.46■■□□□ 1.03
COL7A1-208ENST00000470076 C1orf115Q9H7X2 142 aa21.46■■□□□ 1.03
COL7A1-208ENST00000470076 NOP58Q9Y2X3 529 aaKnown RBP21.46■■□□□ 1.03
COL7A1-208ENST00000470076 MGAMO43451 1857 aa21.45■■□□□ 1.02
COL7A1-208ENST00000470076 TRIM75PA6NK02 468 aa21.45■■□□□ 1.02
COL7A1-208ENST00000470076 ZBTB7BO15156 539 aaPredicted RBP21.45■■□□□ 1.02
COL7A1-208ENST00000470076 BAG3O95817 575 aa21.45■■□□□ 1.02
COL7A1-208ENST00000470076 NAA16Q6N069 864 aaPredicted RBP21.45■■□□□ 1.02
COL7A1-208ENST00000470076 RAET1EQ8TD07 263 aa21.45■■□□□ 1.02
COL7A1-208ENST00000470076 SNRKQ9NRH2 765 aa21.45■■□□□ 1.02
COL7A1-208ENST00000470076 FAM196BA6NMK8 535 aa21.44■■□□□ 1.02
COL7A1-208ENST00000470076 MYCP01106 439 aaPredicted RBP21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms