RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 KIF22Q14807 665 aa23.64■■□□□ 1.37
COL9A3-206ENST00000466532 PRPF38BQ5VTL8 546 aaKnown RBP23.64■■□□□ 1.37
COL9A3-206ENST00000466532 ANKRD23Q86SG2 305 aa23.64■■□□□ 1.37
COL9A3-206ENST00000466532 HMG20BQ9P0W2 317 aa23.64■■□□□ 1.37
COL9A3-206ENST00000466532 PTCH2Q9Y6C5 1203 aa23.64■■□□□ 1.37
COL9A3-206ENST00000466532 SLC34A2O95436 690 aa23.63■■□□□ 1.37
COL9A3-206ENST00000466532 PICALMQ13492 652 aa23.63■■□□□ 1.37
COL9A3-206ENST00000466532 PI16Q6UXB8 463 aa23.63■■□□□ 1.37
COL9A3-206ENST00000466532 SH3BP5LQ7L8J4 393 aa23.63■■□□□ 1.37
COL9A3-206ENST00000466532 SPATA5Q8NB90 893 aa23.63■■□□□ 1.37
COL9A3-206ENST00000466532 ARHGAP39Q9C0H5 1083 aa23.63■■□□□ 1.37
COL9A3-206ENST00000466532 DDX4Q9NQI0 724 aaKnown RBP23.63■■□□□ 1.37
COL9A3-206ENST00000466532 PHF20L1A8MW92 1017 aa23.62■■□□□ 1.37
COL9A3-206ENST00000466532 PDHXO00330 501 aa23.62■■□□□ 1.37
COL9A3-206ENST00000466532 LACTBP83111 547 aaPredicted RBP23.62■■□□□ 1.37
COL9A3-206ENST00000466532 GPR75-ASB3A0A0A6YYF3 556 aa23.61■■□□□ 1.37
COL9A3-206ENST00000466532 DDTLA6NHG4 134 aaPredicted RBP23.61■■□□□ 1.37
COL9A3-206ENST00000466532 ARID4AP29374 1257 aaPredicted RBP23.61■■□□□ 1.37
COL9A3-206ENST00000466532 SLC9C1Q4G0N8 1177 aa23.61■■□□□ 1.37
COL9A3-206ENST00000466532 TBC1D9Q6ZT07 1266 aa23.61■■□□□ 1.37
COL9A3-206ENST00000466532 SCYL3Q8IZE3 742 aa23.61■■□□□ 1.37
COL9A3-206ENST00000466532 ZNF384Q8TF68 577 aa23.61■■□□□ 1.37
COL9A3-206ENST00000466532 FOCADQ5VW36 1801 aa23.61■■□□□ 1.37
COL9A3-206ENST00000466532 GSTO1P78417 241 aa23.6■■□□□ 1.37
COL9A3-206ENST00000466532 MOGSQ13724 837 aa23.6■■□□□ 1.37
COL9A3-206ENST00000466532 C17orf99Q6UX52 265 aa23.6■■□□□ 1.37
COL9A3-206ENST00000466532 NBPF11Q86T75 865 aa23.6■■□□□ 1.37
COL9A3-206ENST00000466532 MIER1Q8N108 512 aa23.6■■□□□ 1.37
COL9A3-206ENST00000466532 ZNF333Q96JL9 665 aa23.6■■□□□ 1.37
COL9A3-206ENST00000466532 PICK1Q9NRD5 415 aa23.6■■□□□ 1.37
COL9A3-206ENST00000466532 RAI14Q9P0K7 980 aa23.6■■□□□ 1.37
COL9A3-206ENST00000466532 CPA4Q9UI42 421 aa23.6■■□□□ 1.37
COL9A3-206ENST00000466532 CXCL11O14625 94 aa23.59■■□□□ 1.37
COL9A3-206ENST00000466532 ECM2O94769 699 aaPredicted RBP23.59■■□□□ 1.37
COL9A3-206ENST00000466532 LDHCP07864 332 aa23.59■■□□□ 1.37
COL9A3-206ENST00000466532 MCAMP43121 646 aa23.59■■□□□ 1.37
COL9A3-206ENST00000466532 RHBDL3P58872 404 aa23.59■■□□□ 1.37
COL9A3-206ENST00000466532 MAP3K10Q02779 954 aa23.59■■□□□ 1.37
COL9A3-206ENST00000466532 NSUN4Q96CB9 384 aaKnown RBP23.59■■□□□ 1.37
COL9A3-206ENST00000466532 ADGRA2Q96PE1 1338 aa23.59■■□□□ 1.37
COL9A3-206ENST00000466532 GNRH1P01148 92 aa23.58■■□□□ 1.37
COL9A3-206ENST00000466532 UQCRFS1P1P0C7P4 283 aa23.58■■□□□ 1.37
COL9A3-206ENST00000466532 SLURP2P0DP57 97 aa23.58■■□□□ 1.37
COL9A3-206ENST00000466532 POLA2Q14181 598 aa23.58■■□□□ 1.37
COL9A3-206ENST00000466532 TMEM106CQ9BVX2 250 aa23.58■■□□□ 1.37
COL9A3-206ENST00000466532 ZHX2Q9Y6X8 837 aa23.58■■□□□ 1.37
COL9A3-206ENST00000466532 PTPRAP18433 802 aa23.57■■□□□ 1.36
COL9A3-206ENST00000466532 EN2P19622 333 aaPredicted RBP23.57■■□□□ 1.36
COL9A3-206ENST00000466532 OS9Q13438 667 aaPredicted RBP23.57■■□□□ 1.36
COL9A3-206ENST00000466532 FTSJ3Q8IY81 847 aaKnown RBP23.57■■□□□ 1.36
COL9A3-206ENST00000466532 SSH3Q8TE77 659 aa23.57■■□□□ 1.36
COL9A3-206ENST00000466532 PARK7Q99497 189 aaKnown RBP23.57■■□□□ 1.36
COL9A3-206ENST00000466532 C1orf115Q9H7X2 142 aa23.57■■□□□ 1.36
COL9A3-206ENST00000466532 SIPA1L1O43166 1804 aa23.56■■□□□ 1.36
COL9A3-206ENST00000466532 CTNND1O60716 968 aaKnown RBP23.56■■□□□ 1.36
COL9A3-206ENST00000466532 NPM3O75607 178 aaKnown RBP23.56■■□□□ 1.36
COL9A3-206ENST00000466532 MAP4K4O95819 1239 aaPredicted RBP23.56■■□□□ 1.36
COL9A3-206ENST00000466532 PRMT2P55345 433 aa23.56■■□□□ 1.36
COL9A3-206ENST00000466532 ATP8B2P98198 1209 aa23.56■■□□□ 1.36
COL9A3-206ENST00000466532 TNNI3KQ59H18 835 aa23.56■■□□□ 1.36
COL9A3-206ENST00000466532 GPAT2Q6NUI2 795 aa23.56■■□□□ 1.36
COL9A3-206ENST00000466532 GPR108Q9NPR9 543 aa23.56■■□□□ 1.36
COL9A3-206ENST00000466532 LRP2BPQ9P2M1 347 aa23.56■■□□□ 1.36
COL9A3-206ENST00000466532 FPGT-TNNI3KV9GXZ4 949 aa23.56■■□□□ 1.36
COL9A3-206ENST00000466532 BRCA2P51587 3418 aa23.56■■□□□ 1.36
COL9A3-206ENST00000466532 A0A0G2JLL6 359 aaPredicted RBP23.55■■□□□ 1.36
COL9A3-206ENST00000466532 SURF6O75683 361 aaKnown RBP23.55■■□□□ 1.36
COL9A3-206ENST00000466532 CTGFP29279 349 aa23.55■■□□□ 1.36
COL9A3-206ENST00000466532 PSMC4P43686 418 aa23.55■■□□□ 1.36
COL9A3-206ENST00000466532 TTC39AQ5SRH9 613 aa23.55■■□□□ 1.36
COL9A3-206ENST00000466532 FASTKD5Q7L8L6 764 aaKnown RBP23.55■■□□□ 1.36
COL9A3-206ENST00000466532 PRRT2Q7Z6L0 340 aaPredicted RBP23.55■■□□□ 1.36
COL9A3-206ENST00000466532 ITPRIPQ8IWB1 547 aa23.55■■□□□ 1.36
COL9A3-206ENST00000466532 SH3TC2Q8TF17 1288 aa23.55■■□□□ 1.36
COL9A3-206ENST00000466532 AFG3L2Q9Y4W6 797 aa23.55■■□□□ 1.36
COL9A3-206ENST00000466532 COL2A1P02458 1487 aaPredicted RBP23.55■■□□□ 1.36
COL9A3-206ENST00000466532 LOC285556D6RIA3 1793 aa23.55■■□□□ 1.36
COL9A3-206ENST00000466532 CYP2C8P10632 490 aa23.54■■□□□ 1.36
COL9A3-206ENST00000466532 CCDC158Q5M9N0 1113 aa23.54■■□□□ 1.36
COL9A3-206ENST00000466532 GADL1Q6ZQY3 521 aa23.54■■□□□ 1.36
COL9A3-206ENST00000466532 DBNDD2Q9BQY9 259 aa23.54■■□□□ 1.36
COL9A3-206ENST00000466532 SNRKQ9NRH2 765 aa23.54■■□□□ 1.36
COL9A3-206ENST00000466532 MKI67P46013 3256 aaKnown RBP23.53■■□□□ 1.36
COL9A3-206ENST00000466532 TBC1D12O60347 775 aa23.53■■□□□ 1.36
COL9A3-206ENST00000466532 FMNL1O95466 1100 aaPredicted RBP23.53■■□□□ 1.36
COL9A3-206ENST00000466532 MYCP01106 439 aaPredicted RBP23.53■■□□□ 1.36
COL9A3-206ENST00000466532 SLC4A8Q2Y0W8 1093 aa23.53■■□□□ 1.36
COL9A3-206ENST00000466532 DIEXFQ68CQ4 756 aaKnown RBP23.53■■□□□ 1.36
COL9A3-206ENST00000466532 TRIM47Q96LD4 638 aa23.53■■□□□ 1.36
COL9A3-206ENST00000466532 OSBPL5Q9H0X9 879 aaPredicted RBP23.53■■□□□ 1.36
COL9A3-206ENST00000466532 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.53■■□□□ 1.36
COL9A3-206ENST00000466532 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.53■■□□□ 1.36
COL9A3-206ENST00000466532 FAM196BA6NMK8 535 aa23.52■■□□□ 1.36
COL9A3-206ENST00000466532 RLBP1P12271 317 aa23.52■■□□□ 1.36
COL9A3-206ENST00000466532 TEX11Q8IYF3 940 aa23.52■■□□□ 1.36
COL9A3-206ENST00000466532 NOL10Q9BSC4 688 aaKnown RBP23.52■■□□□ 1.36
COL9A3-206ENST00000466532 SRRDQ9UH36 339 aa23.52■■□□□ 1.36
COL9A3-206ENST00000466532 MYH1P12882 1939 aa23.52■■□□□ 1.36
COL9A3-206ENST00000466532 TRIM75PA6NK02 468 aa23.51■■□□□ 1.35
COL9A3-206ENST00000466532 BCRP11274 1271 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms