RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 CLUAP1Q96AJ1 413 aa25.56■■□□□ 1.68
COL6A1-203ENST00000466285 IDI2Q9BXS1 227 aa25.56■■□□□ 1.68
COL6A1-203ENST00000466285 ZCCHC17Q9NP64 241 aaKnown RBP25.56■■□□□ 1.68
COL6A1-203ENST00000466285 PICALMQ13492 652 aa25.55■■□□□ 1.68
COL6A1-203ENST00000466285 DZIP1Q86YF9 867 aaKnown RBP25.55■■□□□ 1.68
COL6A1-203ENST00000466285 ARHGAP45Q92619 1136 aa25.55■■□□□ 1.68
COL6A1-203ENST00000466285 TRIM47Q96LD4 638 aa25.55■■□□□ 1.68
COL6A1-203ENST00000466285 MROH7-TTC4A0A0A0MT08 1334 aa25.55■■□□□ 1.68
COL6A1-203ENST00000466285 PDS5AQ29RF7 1337 aaKnown RBP25.55■■□□□ 1.68
COL6A1-203ENST00000466285 FAM196BA6NMK8 535 aa25.54■■□□□ 1.68
COL6A1-203ENST00000466285 ZBTB22O15209 634 aa25.54■■□□□ 1.68
COL6A1-203ENST00000466285 CYP2C8P10632 490 aa25.54■■□□□ 1.68
COL6A1-203ENST00000466285 MECOMQ03112 1051 aa25.54■■□□□ 1.68
COL6A1-203ENST00000466285 TBC1D9Q6ZT07 1266 aa25.54■■□□□ 1.68
COL6A1-203ENST00000466285 HMG20BQ9P0W2 317 aa25.54■■□□□ 1.68
COL6A1-203ENST00000466285 LOC285556D6RIA3 1793 aa25.54■■□□□ 1.68
COL6A1-203ENST00000466285 GNAI3P08754 354 aa25.53■■□□□ 1.68
COL6A1-203ENST00000466285 RHBDL3P58872 404 aa25.53■■□□□ 1.68
COL6A1-203ENST00000466285 FRAT1Q92837 279 aaPredicted RBP25.53■■□□□ 1.68
COL6A1-203ENST00000466285 FOCADQ5VW36 1801 aa25.52■■□□□ 1.68
COL6A1-203ENST00000466285 ENTPD3O75355 529 aa25.52■■□□□ 1.68
COL6A1-203ENST00000466285 SCYL3Q8IZE3 742 aa25.51■■□□□ 1.67
COL6A1-203ENST00000466285 NEUROD6Q96NK8 337 aa25.51■■□□□ 1.67
COL6A1-203ENST00000466285 PTPRAP18433 802 aa25.5■■□□□ 1.67
COL6A1-203ENST00000466285 OSBPP22059 807 aa25.5■■□□□ 1.67
COL6A1-203ENST00000466285 MVPQ14764 893 aaKnown RBP25.5■■□□□ 1.67
COL6A1-203ENST00000466285 MTFR1Q15390 333 aa25.5■■□□□ 1.67
COL6A1-203ENST00000466285 ATF7IPQ6VMQ6 1270 aa25.5■■□□□ 1.67
COL6A1-203ENST00000466285 ZGPATQ8N5A5 531 aaKnown RBP25.5■■□□□ 1.67
COL6A1-203ENST00000466285 TMEM57Q8N5G2 664 aa25.5■■□□□ 1.67
COL6A1-203ENST00000466285 SHISA4Q96DD7 197 aa25.5■■□□□ 1.67
COL6A1-203ENST00000466285 ZHX2Q9Y6X8 837 aa25.5■■□□□ 1.67
COL6A1-203ENST00000466285 BCRP11274 1271 aa25.49■■□□□ 1.67
COL6A1-203ENST00000466285 MCAMP43121 646 aa25.49■■□□□ 1.67
COL6A1-203ENST00000466285 PSMC4P43686 418 aa25.49■■□□□ 1.67
COL6A1-203ENST00000466285 MAP3K10Q02779 954 aa25.49■■□□□ 1.67
COL6A1-203ENST00000466285 ZSCAN29Q8IWY8 852 aaPredicted RBP25.49■■□□□ 1.67
COL6A1-203ENST00000466285 FAM163AQ96GL9 167 aaPredicted RBP25.49■■□□□ 1.67
COL6A1-203ENST00000466285 GPR75-ASB3A0A0A6YYF3 556 aa25.48■■□□□ 1.67
COL6A1-203ENST00000466285 A0A0G2JLL6 359 aaPredicted RBP25.48■■□□□ 1.67
COL6A1-203ENST00000466285 ARID4AP29374 1257 aaPredicted RBP25.48■■□□□ 1.67
COL6A1-203ENST00000466285 RRP1BQ14684 758 aaKnown RBP25.48■■□□□ 1.67
COL6A1-203ENST00000466285 PRRT2Q7Z6L0 340 aaPredicted RBP25.48■■□□□ 1.67
COL6A1-203ENST00000466285 SPATA5Q8NB90 893 aa25.48■■□□□ 1.67
COL6A1-203ENST00000466285 NSUN4Q96CB9 384 aaKnown RBP25.48■■□□□ 1.67
COL6A1-203ENST00000466285 C1orf115Q9H7X2 142 aa25.48■■□□□ 1.67
COL6A1-203ENST00000466285 GNAI2P04899 355 aa25.47■■□□□ 1.67
COL6A1-203ENST00000466285 KIF22Q14807 665 aa25.47■■□□□ 1.67
COL6A1-203ENST00000466285 SLC4A8Q2Y0W8 1093 aa25.47■■□□□ 1.67
COL6A1-203ENST00000466285 TMEM106CQ9BVX2 250 aa25.47■■□□□ 1.67
COL6A1-203ENST00000466285 SRRDQ9UH36 339 aa25.47■■□□□ 1.67
COL6A1-203ENST00000466285 HDAC5Q9UQL6 1122 aa25.47■■□□□ 1.67
COL6A1-203ENST00000466285 AKAP2Q9Y2D5 859 aa25.47■■□□□ 1.67
COL6A1-203ENST00000466285 AFG3L2Q9Y4W6 797 aa25.47■■□□□ 1.67
COL6A1-203ENST00000466285 DOCK3Q8IZD9 2030 aa25.47■■□□□ 1.67
COL6A1-203ENST00000466285 ERICH6Q7L0X2 663 aa25.46■■□□□ 1.67
COL6A1-203ENST00000466285 CEP290O15078 2479 aa25.46■■□□□ 1.67
COL6A1-203ENST00000466285 MYPNQ86TC9 1320 aa25.45■■□□□ 1.66
COL6A1-203ENST00000466285 CXCL11O14625 94 aa25.45■■□□□ 1.66
COL6A1-203ENST00000466285 PRKCZQ05513 592 aa25.45■■□□□ 1.66
COL6A1-203ENST00000466285 GADL1Q6ZQY3 521 aa25.45■■□□□ 1.66
COL6A1-203ENST00000466285 PARK7Q99497 189 aaKnown RBP25.45■■□□□ 1.66
COL6A1-203ENST00000466285 GABRQQ9UN88 632 aa25.45■■□□□ 1.66
COL6A1-203ENST00000466285 TRIM75PA6NK02 468 aa25.44■■□□□ 1.66
COL6A1-203ENST00000466285 ARHGEF6Q15052 776 aa25.44■■□□□ 1.66
COL6A1-203ENST00000466285 NBPF11Q86T75 865 aa25.44■■□□□ 1.66
COL6A1-203ENST00000466285 PICK1Q9NRD5 415 aa25.44■■□□□ 1.66
COL6A1-203ENST00000466285 SNRKQ9NRH2 765 aa25.44■■□□□ 1.66
COL6A1-203ENST00000466285 COL2A1P02458 1487 aaPredicted RBP25.44■■□□□ 1.66
COL6A1-203ENST00000466285 FMNL1O95466 1100 aaPredicted RBP25.43■■□□□ 1.66
COL6A1-203ENST00000466285 TREML2Q5T2D2 321 aa25.43■■□□□ 1.66
COL6A1-203ENST00000466285 SPTY2D1Q68D10 685 aaPredicted RBP25.43■■□□□ 1.66
COL6A1-203ENST00000466285 ADGRA1Q86SQ6 560 aa25.43■■□□□ 1.66
COL6A1-203ENST00000466285 RLBP1P12271 317 aa25.42■■□□□ 1.66
COL6A1-203ENST00000466285 POLA2Q14181 598 aa25.42■■□□□ 1.66
COL6A1-203ENST00000466285 SHROOM1Q2M3G4 852 aaPredicted RBP25.42■■□□□ 1.66
COL6A1-203ENST00000466285 SH3RF3Q8TEJ3 882 aaPredicted RBP25.42■■□□□ 1.66
COL6A1-203ENST00000466285 DBNDD2Q9BQY9 259 aa25.42■■□□□ 1.66
COL6A1-203ENST00000466285 TLR7Q9NYK1 1049 aaKnown RBP25.42■■□□□ 1.66
COL6A1-203ENST00000466285 RAI14Q9P0K7 980 aa25.42■■□□□ 1.66
COL6A1-203ENST00000466285 GNRH1P01148 92 aa25.41■■□□□ 1.66
COL6A1-203ENST00000466285 HABP4Q5JVS0 413 aaKnown RBP25.41■■□□□ 1.66
COL6A1-203ENST00000466285 OSBPL5Q9H0X9 879 aaPredicted RBP25.41■■□□□ 1.66
COL6A1-203ENST00000466285 IPO8O15397 1037 aaKnown RBP25.4■■□□□ 1.66
COL6A1-203ENST00000466285 CTNND1O60716 968 aaKnown RBP25.4■■□□□ 1.66
COL6A1-203ENST00000466285 GORABQ5T7V8 394 aa25.4■■□□□ 1.66
COL6A1-203ENST00000466285 SLF2Q8IX21 1173 aa25.4■■□□□ 1.66
COL6A1-203ENST00000466285 PLXNB2O15031 1838 aa25.4■■□□□ 1.66
COL6A1-203ENST00000466285 GRK4P32298 578 aa25.39■■□□□ 1.66
COL6A1-203ENST00000466285 PRMT2P55345 433 aa25.39■■□□□ 1.66
COL6A1-203ENST00000466285 JAG1P78504 1218 aa25.39■■□□□ 1.66
COL6A1-203ENST00000466285 G3BP1Q13283 466 aaKnown RBP eCLIP25.39■■□□□ 1.66
COL6A1-203ENST00000466285 TNNI3KQ59H18 835 aa25.39■■□□□ 1.66
COL6A1-203ENST00000466285 RAET1EQ8TD07 263 aa25.39■■□□□ 1.66
COL6A1-203ENST00000466285 FPGT-TNNI3KV9GXZ4 949 aa25.39■■□□□ 1.66
COL6A1-203ENST00000466285 ZKSCAN2Q63HK3 967 aa25.38■■□□□ 1.65
COL6A1-203ENST00000466285 SSH3Q8TE77 659 aa25.38■■□□□ 1.65
COL6A1-203ENST00000466285 DNAJC18Q9H819 358 aa25.38■■□□□ 1.65
COL6A1-203ENST00000466285 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.38■■□□□ 1.65
COL6A1-203ENST00000466285 ALPK3Q96L96 1907 aa25.37■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms