RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 USP40Q9NVE5 1235 aa21.68■■□□□ 1.06
COL7A1-205ENST00000465238 PDS5AQ29RF7 1337 aaKnown RBP21.68■■□□□ 1.06
COL7A1-205ENST00000465238 MYH2Q9UKX2 1941 aa21.68■■□□□ 1.06
COL7A1-205ENST00000465238 IRF6O14896 467 aa21.67■■□□□ 1.06
COL7A1-205ENST00000465238 PPATQ06203 517 aa21.67■■□□□ 1.06
COL7A1-205ENST00000465238 NFIAQ12857 509 aa21.67■■□□□ 1.06
COL7A1-205ENST00000465238 CLASRPQ8N2M8 674 aaKnown RBP21.67■■□□□ 1.06
COL7A1-205ENST00000465238 BCL11AQ9H165 835 aa21.67■■□□□ 1.06
COL7A1-205ENST00000465238 IL1RAPL2Q9NP60 686 aa21.67■■□□□ 1.06
COL7A1-205ENST00000465238 CENPFP49454 3210 aa21.67■■□□□ 1.06
COL7A1-205ENST00000465238 RASGRF1Q13972 1273 aa21.66■■□□□ 1.06
COL7A1-205ENST00000465238 AACSQ86V21 672 aa21.66■■□□□ 1.06
COL7A1-205ENST00000465238 EAF2Q96CJ1 260 aaPredicted RBP21.66■■□□□ 1.06
COL7A1-205ENST00000465238 LRRCC1Q9C099 1032 aa21.66■■□□□ 1.06
COL7A1-205ENST00000465238 CCDC8Q9H0W5 538 aaPredicted RBP21.66■■□□□ 1.06
COL7A1-205ENST00000465238 FAM198AQ9UFP1 575 aa21.66■■□□□ 1.06
COL7A1-205ENST00000465238 ZNF112Q9UJU3 913 aa21.66■■□□□ 1.06
COL7A1-205ENST00000465238 INPP5BP32019 993 aa21.65■■□□□ 1.06
COL7A1-205ENST00000465238 HDAC1Q13547 482 aaPredicted RBP21.65■■□□□ 1.06
COL7A1-205ENST00000465238 CCDC158Q5M9N0 1113 aa21.65■■□□□ 1.06
COL7A1-205ENST00000465238 SPTY2D1Q68D10 685 aaPredicted RBP21.65■■□□□ 1.06
COL7A1-205ENST00000465238 SLF2Q8IX21 1173 aa21.65■■□□□ 1.06
COL7A1-205ENST00000465238 DBNDD2Q9BQY9 259 aa21.65■■□□□ 1.06
COL7A1-205ENST00000465238 GAKO14976 1311 aa21.64■■□□□ 1.05
COL7A1-205ENST00000465238 BTBD19C9JJ37 291 aa21.64■■□□□ 1.05
COL7A1-205ENST00000465238 TLR2O60603 784 aa21.64■■□□□ 1.05
COL7A1-205ENST00000465238 DZIP1Q86YF9 867 aaKnown RBP21.64■■□□□ 1.05
COL7A1-205ENST00000465238 IDI2Q9BXS1 227 aa21.64■■□□□ 1.05
COL7A1-205ENST00000465238 RWDD1Q9H446 243 aaPredicted RBP21.64■■□□□ 1.05
COL7A1-205ENST00000465238 ABCF2Q9UG63 623 aa21.64■■□□□ 1.05
COL7A1-205ENST00000465238 KIAA0100Q14667 2235 aaKnown RBP21.64■■□□□ 1.05
COL7A1-205ENST00000465238 ENTPD3O75355 529 aa21.63■■□□□ 1.05
COL7A1-205ENST00000465238 IFIT2P09913 472 aaKnown RBP21.63■■□□□ 1.05
COL7A1-205ENST00000465238 UQCRFS1P1P0C7P4 283 aa21.63■■□□□ 1.05
COL7A1-205ENST00000465238 CAP1Q01518 475 aa21.63■■□□□ 1.05
COL7A1-205ENST00000465238 TTC39AQ5SRH9 613 aa21.63■■□□□ 1.05
COL7A1-205ENST00000465238 NOL9Q5SY16 702 aaKnown RBP21.63■■□□□ 1.05
COL7A1-205ENST00000465238 ARMC5Q96C12 935 aa21.63■■□□□ 1.05
COL7A1-205ENST00000465238 FAM163AQ96GL9 167 aaPredicted RBP21.63■■□□□ 1.05
COL7A1-205ENST00000465238 DOCK2Q92608 1830 aa21.62■■□□□ 1.05
COL7A1-205ENST00000465238 RBBP6Q7Z6E9 1792 aaKnown RBP21.62■■□□□ 1.05
COL7A1-205ENST00000465238 SLC34A2O95436 690 aa21.62■■□□□ 1.05
COL7A1-205ENST00000465238 DBNLQ9UJU6 430 aaKnown RBP21.62■■□□□ 1.05
COL7A1-205ENST00000465238 RGS3P49796 1198 aa21.61■■□□□ 1.05
COL7A1-205ENST00000465238 PRPF38BQ5VTL8 546 aaKnown RBP21.61■■□□□ 1.05
COL7A1-205ENST00000465238 ZFPM1Q8IX07 1006 aa21.61■■□□□ 1.05
COL7A1-205ENST00000465238 TLR7Q9NYK1 1049 aaKnown RBP21.61■■□□□ 1.05
COL7A1-205ENST00000465238 ZBTB47Q9UFB7 747 aaPredicted RBP21.61■■□□□ 1.05
COL7A1-205ENST00000465238 KCNH4Q9UQ05 1017 aa21.61■■□□□ 1.05
COL7A1-205ENST00000465238 RFX7Q2KHR2 1363 aa21.61■■□□□ 1.05
COL7A1-205ENST00000465238 SMARCA5O60264 1052 aaPredicted RBP21.6■■□□□ 1.05
COL7A1-205ENST00000465238 ARID4AP29374 1257 aaPredicted RBP21.6■■□□□ 1.05
COL7A1-205ENST00000465238 KIF22Q14807 665 aa21.6■■□□□ 1.05
COL7A1-205ENST00000465238 ANKRD23Q86SG2 305 aa21.6■■□□□ 1.05
COL7A1-205ENST00000465238 GCC1Q96CN9 775 aa21.6■■□□□ 1.05
COL7A1-205ENST00000465238 ATRNL1Q5VV63 1379 aa21.6■■□□□ 1.05
COL7A1-205ENST00000465238 ERICH6Q7L0X2 663 aa21.59■■□□□ 1.05
COL7A1-205ENST00000465238 SPATA5Q8NB90 893 aa21.59■■□□□ 1.05
COL7A1-205ENST00000465238 MROH7-TTC4A0A0A0MT08 1334 aa21.58■■□□□ 1.05
COL7A1-205ENST00000465238 POTEFA5A3E0 1075 aa21.58■■□□□ 1.05
COL7A1-205ENST00000465238 GNRH1P01148 92 aa21.58■■□□□ 1.05
COL7A1-205ENST00000465238 BTDP43251 543 aa21.58■■□□□ 1.05
COL7A1-205ENST00000465238 LACTBP83111 547 aaPredicted RBP21.58■■□□□ 1.05
COL7A1-205ENST00000465238 MECOMQ03112 1051 aa21.58■■□□□ 1.05
COL7A1-205ENST00000465238 NBPF11Q86T75 865 aa21.58■■□□□ 1.05
COL7A1-205ENST00000465238 ZSCAN29Q8IWY8 852 aaPredicted RBP21.58■■□□□ 1.05
COL7A1-205ENST00000465238 ZNF512BQ96KM6 892 aaPredicted RBP21.58■■□□□ 1.05
COL7A1-205ENST00000465238 HMG20BQ9P0W2 317 aa21.58■■□□□ 1.05
COL7A1-205ENST00000465238 CXCL11O14625 94 aa21.57■■□□□ 1.04
COL7A1-205ENST00000465238 NEFLP07196 543 aa21.57■■□□□ 1.04
COL7A1-205ENST00000465238 MAP3K10Q02779 954 aa21.57■■□□□ 1.04
COL7A1-205ENST00000465238 SLC9C1Q4G0N8 1177 aa21.57■■□□□ 1.04
COL7A1-205ENST00000465238 PTCH2Q9Y6C5 1203 aa21.57■■□□□ 1.04
COL7A1-205ENST00000465238 MKI67P46013 3256 aaKnown RBP21.56■■□□□ 1.04
COL7A1-205ENST00000465238 GPR75-ASB3A0A0A6YYF3 556 aa21.56■■□□□ 1.04
COL7A1-205ENST00000465238 PHF20L1A8MW92 1017 aa21.56■■□□□ 1.04
COL7A1-205ENST00000465238 PDHXO00330 501 aa21.56■■□□□ 1.04
COL7A1-205ENST00000465238 IGHDP01880 384 aa21.56■■□□□ 1.04
COL7A1-205ENST00000465238 MCAMP43121 646 aa21.56■■□□□ 1.04
COL7A1-205ENST00000465238 GSTO1P78417 241 aa21.56■■□□□ 1.04
COL7A1-205ENST00000465238 C17orf99Q6UX52 265 aa21.56■■□□□ 1.04
COL7A1-205ENST00000465238 SH3BP5LQ7L8J4 393 aa21.56■■□□□ 1.04
COL7A1-205ENST00000465238 SCYL3Q8IZE3 742 aa21.56■■□□□ 1.04
COL7A1-205ENST00000465238 ZNF333Q96JL9 665 aa21.56■■□□□ 1.04
COL7A1-205ENST00000465238 SNRKQ9NRH2 765 aa21.56■■□□□ 1.04
COL7A1-205ENST00000465238 NPM3O75607 178 aaKnown RBP21.55■■□□□ 1.04
COL7A1-205ENST00000465238 MAP4K4O95819 1239 aaPredicted RBP21.55■■□□□ 1.04
COL7A1-205ENST00000465238 LDHCP07864 332 aa21.55■■□□□ 1.04
COL7A1-205ENST00000465238 PRMT2P55345 433 aa21.55■■□□□ 1.04
COL7A1-205ENST00000465238 MOGSQ13724 837 aa21.55■■□□□ 1.04
COL7A1-205ENST00000465238 ANKRD45Q5TZF3 282 aa21.55■■□□□ 1.04
COL7A1-205ENST00000465238 TMEM106CQ9BVX2 250 aa21.55■■□□□ 1.04
COL7A1-205ENST00000465238 DDX4Q9NQI0 724 aaKnown RBP21.55■■□□□ 1.04
COL7A1-205ENST00000465238 PICK1Q9NRD5 415 aa21.55■■□□□ 1.04
COL7A1-205ENST00000465238 BRCA2P51587 3418 aa21.54■■□□□ 1.04
COL7A1-205ENST00000465238 DDTLA6NHG4 134 aaPredicted RBP21.54■■□□□ 1.04
COL7A1-205ENST00000465238 RHBDL3P58872 404 aa21.54■■□□□ 1.04
COL7A1-205ENST00000465238 PICALMQ13492 652 aa21.54■■□□□ 1.04
COL7A1-205ENST00000465238 PI16Q6UXB8 463 aa21.54■■□□□ 1.04
COL7A1-205ENST00000465238 ZNF384Q8TF68 577 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms