RNA–Protein interactions for RNA: ENST00000463486.5

VPS52-214, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 925 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-214ENST00000463486 GRM1Q13255 1194 aa21.48■■□□□ 1.03
VPS52-214ENST00000463486 SLFNL1Q499Z3 407 aa21.48■■□□□ 1.03
VPS52-214ENST00000463486 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.48■■□□□ 1.03
VPS52-214ENST00000463486 TEX11Q8IYF3 940 aa21.48■■□□□ 1.03
VPS52-214ENST00000463486 MIGA1Q8NAN2 632 aa21.48■■□□□ 1.03
VPS52-214ENST00000463486 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.48■■□□□ 1.03
VPS52-214ENST00000463486 ADD2P35612 726 aa21.47■■□□□ 1.03
VPS52-214ENST00000463486 NOGQ13253 232 aa21.47■■□□□ 1.03
VPS52-214ENST00000463486 PICALMQ13492 652 aa21.47■■□□□ 1.03
VPS52-214ENST00000463486 GPATCH3Q96I76 525 aa21.47■■□□□ 1.03
VPS52-214ENST00000463486 WBP1LQ9NX94 342 aa21.47■■□□□ 1.03
VPS52-214ENST00000463486 ZNF532Q9HCE3 1301 aa21.47■■□□□ 1.03
VPS52-214ENST00000463486 COL2A1P02458 1487 aaPredicted RBP21.46■■□□□ 1.03
VPS52-214ENST00000463486 SLURP2P0DP57 97 aa21.46■■□□□ 1.03
VPS52-214ENST00000463486 IREB2P48200 963 aaKnown RBP21.46■■□□□ 1.03
VPS52-214ENST00000463486 B4GALNT3Q6L9W6 998 aa21.46■■□□□ 1.03
VPS52-214ENST00000463486 MIGA2Q7L4E1 593 aa21.46■■□□□ 1.03
VPS52-214ENST00000463486 LNPKQ9C0E8 428 aa21.46■■□□□ 1.03
VPS52-214ENST00000463486 OSBPL5Q9H0X9 879 aaPredicted RBP21.46■■□□□ 1.03
VPS52-214ENST00000463486 ZNF112Q9UJU3 913 aa21.46■■□□□ 1.03
VPS52-214ENST00000463486 OTOFQ9HC10 1997 aa21.45■■□□□ 1.02
VPS52-214ENST00000463486 PLCG2P16885 1265 aa21.45■■□□□ 1.02
VPS52-214ENST00000463486 PDE1AP54750 535 aa21.45■■□□□ 1.02
VPS52-214ENST00000463486 CHD1LQ86WJ1 897 aa21.45■■□□□ 1.02
VPS52-214ENST00000463486 ANKRD13AQ8IZ07 590 aa21.45■■□□□ 1.02
VPS52-214ENST00000463486 CDK5RAP2Q96SN8 1893 aa21.45■■□□□ 1.02
VPS52-214ENST00000463486 PHF20L1A8MW92 1017 aa21.44■■□□□ 1.02
VPS52-214ENST00000463486 GLRX3O76003 335 aaKnown RBP21.44■■□□□ 1.02
VPS52-214ENST00000463486 MAP3K9P80192 1104 aa21.44■■□□□ 1.02
VPS52-214ENST00000463486 KIF23Q02241 960 aaPredicted RBP21.44■■□□□ 1.02
VPS52-214ENST00000463486 UBE3CQ15386 1083 aa21.44■■□□□ 1.02
VPS52-214ENST00000463486 KBTBD3Q8NAB2 608 aa21.44■■□□□ 1.02
VPS52-214ENST00000463486 TGFBRAP1Q8WUH2 860 aa21.44■■□□□ 1.02
VPS52-214ENST00000463486 HOOK2Q96ED9 719 aa21.44■■□□□ 1.02
VPS52-214ENST00000463486 CSRNP1Q96S65 589 aa21.44■■□□□ 1.02
VPS52-214ENST00000463486 NOL10Q9BSC4 688 aaKnown RBP21.44■■□□□ 1.02
VPS52-214ENST00000463486 GJA5P36382 358 aa21.43■■□□□ 1.02
VPS52-214ENST00000463486 VGLL4Q14135 290 aa21.43■■□□□ 1.02
VPS52-214ENST00000463486 SPRYD7Q5W111 196 aa21.43■■□□□ 1.02
VPS52-214ENST00000463486 SLC10A4Q96EP9 437 aa21.43■■□□□ 1.02
VPS52-214ENST00000463486 FLT1P17948 1338 aa21.43■■□□□ 1.02
VPS52-214ENST00000463486 FOCADQ5VW36 1801 aa21.43■■□□□ 1.02
VPS52-214ENST00000463486 ERC2O15083 957 aa21.42■■□□□ 1.02
VPS52-214ENST00000463486 DCAF15Q66K64 600 aa21.42■■□□□ 1.02
VPS52-214ENST00000463486 CERS3Q8IU89 383 aa21.42■■□□□ 1.02
VPS52-214ENST00000463486 MAPKAPK5Q8IW41 473 aa21.42■■□□□ 1.02
VPS52-214ENST00000463486 ZKSCAN4Q969J2 545 aaPredicted RBP21.42■■□□□ 1.02
VPS52-214ENST00000463486 ZNF341Q9BYN7 854 aa21.42■■□□□ 1.02
VPS52-214ENST00000463486 SNCAIPQ9Y6H5 919 aa21.42■■□□□ 1.02
VPS52-214ENST00000463486 MAGEB6P1A0A0J9YX57 407 aa21.41■■□□□ 1.02
VPS52-214ENST00000463486 TBC1D12O60347 775 aa21.41■■□□□ 1.02
VPS52-214ENST00000463486 HSPA1AP0DMV8 641 aaKnown RBP21.41■■□□□ 1.02
VPS52-214ENST00000463486 HSPA1BP0DMV9 641 aaKnown RBP21.41■■□□□ 1.02
VPS52-214ENST00000463486 INPP5BP32019 993 aa21.41■■□□□ 1.02
VPS52-214ENST00000463486 MAP2K1Q02750 393 aaPredicted RBP21.41■■□□□ 1.02
VPS52-214ENST00000463486 METTL16Q86W50 562 aaKnown RBP21.41■■□□□ 1.02
VPS52-214ENST00000463486 PLEKHM2Q8IWE5 1019 aa21.41■■□□□ 1.02
VPS52-214ENST00000463486 LCORLQ8N3X6 602 aa21.41■■□□□ 1.02
VPS52-214ENST00000463486 WRNIP1Q96S55 665 aa21.41■■□□□ 1.02
VPS52-214ENST00000463486 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.41■■□□□ 1.023e-7■■■■■ 32.5
VPS52-214ENST00000463486 ZSCAN29Q8IWY8 852 aaPredicted RBP21.4■■□□□ 1.02
VPS52-214ENST00000463486 CNKSR2Q8WXI2 1034 aa21.4■■□□□ 1.02
VPS52-214ENST00000463486 WNK4Q96J92 1243 aa21.4■■□□□ 1.02
VPS52-214ENST00000463486 PUS7LQ9H0K6 701 aaKnown RBP21.4■■□□□ 1.02
VPS52-214ENST00000463486 OSBPL3Q9H4L5 887 aa21.4■■□□□ 1.02
VPS52-214ENST00000463486 ELP3Q9H9T3 547 aa21.4■■□□□ 1.02
VPS52-214ENST00000463486 ZBTB47Q9UFB7 747 aaPredicted RBP21.4■■□□□ 1.02
VPS52-214ENST00000463486 AK9Q5TCS8 1911 aa21.39■■□□□ 1.02
VPS52-214ENST00000463486 SIPA1L1O43166 1804 aa21.39■■□□□ 1.02
VPS52-214ENST00000463486 ARMT1Q9H993 441 aa21.39■■□□□ 1.01
VPS52-214ENST00000463486 MYH7P12883 1935 aa21.39■■□□□ 1.01
VPS52-214ENST00000463486 FOXN1O15353 648 aa21.38■■□□□ 1.01
VPS52-214ENST00000463486 ZBTB48P10074 688 aaPredicted RBP21.38■■□□□ 1.01
VPS52-214ENST00000463486 PDE4AP27815 886 aa21.38■■□□□ 1.01
VPS52-214ENST00000463486 MKRN3Q13064 507 aaKnown RBP21.38■■□□□ 1.01
VPS52-214ENST00000463486 ZSCAN25Q6NSZ9 544 aa21.38■■□□□ 1.01
VPS52-214ENST00000463486 DHX36Q9H2U1 1008 aaKnown RBP21.38■■□□□ 1.01
VPS52-214ENST00000463486 PALD1Q9ULE6 856 aa21.38■■□□□ 1.01
VPS52-214ENST00000463486 FAM196BA6NMK8 535 aa21.37■■□□□ 1.01
VPS52-214ENST00000463486 RNF113AO15541 343 aaKnown RBP21.37■■□□□ 1.01
VPS52-214ENST00000463486 PRKAB2O43741 272 aa21.37■■□□□ 1.01
VPS52-214ENST00000463486 MBD4O95243 580 aa21.37■■□□□ 1.01
VPS52-214ENST00000463486 TM4SF4P48230 202 aa21.37■■□□□ 1.01
VPS52-214ENST00000463486 RRP1BQ14684 758 aaKnown RBP21.37■■□□□ 1.01
VPS52-214ENST00000463486 NOL9Q5SY16 702 aaKnown RBP21.37■■□□□ 1.01
VPS52-214ENST00000463486 OSBP2Q969R2 916 aa21.37■■□□□ 1.01
VPS52-214ENST00000463486 OPTNQ96CV9 577 aa21.37■■□□□ 1.01
VPS52-214ENST00000463486 DNAJC18Q9H819 358 aa21.37■■□□□ 1.01
VPS52-214ENST00000463486 PI4KBQ9UBF8 816 aa21.37■■□□□ 1.01
VPS52-214ENST00000463486 LAMB1P07942 1786 aa21.36■■□□□ 1.01
VPS52-214ENST00000463486 SPDYE5A6NIY4 337 aa21.36■■□□□ 1.01
VPS52-214ENST00000463486 MS4A4AQ96JQ5 239 aa21.36■■□□□ 1.01
VPS52-214ENST00000463486 SAP30BPQ9UHR5 308 aaKnown RBP21.36■■□□□ 1.01
VPS52-214ENST00000463486 CSADQ9Y600 493 aa21.36■■□□□ 1.01
VPS52-214ENST00000463486 DDX60LQ5H9U9 1706 aaKnown RBP21.35■■□□□ 1.01
VPS52-214ENST00000463486 REM2Q8IYK8 340 aaPredicted RBP21.35■■□□□ 1.01
VPS52-214ENST00000463486 SDR42E1Q8WUS8 393 aa21.35■■□□□ 1.01
VPS52-214ENST00000463486 STRBPQ96SI9 672 aaKnown RBP21.35■■□□□ 1.01
VPS52-214ENST00000463486 CRNKL1Q9BZJ0 848 aaKnown RBP21.35■■□□□ 1.01
VPS52-214ENST00000463486 DCP1AQ9NPI6 582 aaPredicted RBP21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms