RNA–Protein interactions for RNA: ENST00000439029.5

SMPD4-208, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 4

Gene SMPD4, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-208ENST00000439029 TREML2Q5T2D2 321 aa12.38□□□□□ -0.43
SMPD4-208ENST00000439029 FKBP1CQ5VVH2 108 aa12.38□□□□□ -0.43
SMPD4-208ENST00000439029 TRIB2Q92519 343 aa12.38□□□□□ -0.43
SMPD4-208ENST00000439029 SYMPKQ92797 1274 aaKnown RBP12.38□□□□□ -0.43
SMPD4-208ENST00000439029 FAM122AQ96E09 287 aa12.38□□□□□ -0.43
SMPD4-208ENST00000439029 PICK1Q9NRD5 415 aa12.38□□□□□ -0.43
SMPD4-208ENST00000439029 ADAMTS8Q9UP79 889 aa12.38□□□□□ -0.43
SMPD4-208ENST00000439029 RPAP1Q9BWH6 1393 aaPredicted RBP12.38□□□□□ -0.43
SMPD4-208ENST00000439029 PRUNE2Q8WUY3 3088 aa12.38□□□□□ -0.43
SMPD4-208ENST00000439029 PRKAR2AP13861 404 aaKnown RBP12.37□□□□□ -0.43
SMPD4-208ENST00000439029 PTPRAP18433 802 aa12.37□□□□□ -0.43
SMPD4-208ENST00000439029 CYP2B6P20813 491 aa12.37□□□□□ -0.43
SMPD4-208ENST00000439029 FBXO33Q7Z6M2 555 aa12.37□□□□□ -0.43
SMPD4-208ENST00000439029 DNAAF4Q8WXU2 420 aa12.37□□□□□ -0.43
SMPD4-208ENST00000439029 TSR2Q969E8 191 aaKnown RBP12.37□□□□□ -0.43
SMPD4-208ENST00000439029 TTYH1Q9H313 450 aaPredicted RBP12.37□□□□□ -0.43
SMPD4-208ENST00000439029 GJD2Q9UKL4 321 aa12.37□□□□□ -0.43
SMPD4-208ENST00000439029 AFG3L2Q9Y4W6 797 aa12.37□□□□□ -0.43
SMPD4-208ENST00000439029 COL2A1P02458 1487 aaPredicted RBP12.37□□□□□ -0.43
SMPD4-208ENST00000439029 PEX10O60683 326 aa12.36□□□□□ -0.43
SMPD4-208ENST00000439029 COL6A1P12109 1028 aa12.36□□□□□ -0.43
SMPD4-208ENST00000439029 FKBP5Q13451 457 aaPredicted RBP12.36□□□□□ -0.43
SMPD4-208ENST00000439029 SHHQ15465 462 aa12.36□□□□□ -0.43
SMPD4-208ENST00000439029 DIXDC1Q155Q3 683 aa12.36□□□□□ -0.43
SMPD4-208ENST00000439029 C9orf50Q5SZB4 431 aa12.36□□□□□ -0.43
SMPD4-208ENST00000439029 CDC42EP5Q6NZY7 148 aa12.36□□□□□ -0.43
SMPD4-208ENST00000439029 SCYL3Q8IZE3 742 aa12.36□□□□□ -0.43
SMPD4-208ENST00000439029 USP38Q8NB14 1042 aa12.36□□□□□ -0.43
SMPD4-208ENST00000439029 LINS1Q8NG48 757 aa12.36□□□□□ -0.43
SMPD4-208ENST00000439029 TBC1D22AQ8WUA7 517 aa12.36□□□□□ -0.43
SMPD4-208ENST00000439029 PHF20L1A8MW92 1017 aa12.35□□□□□ -0.43
SMPD4-208ENST00000439029 APAF1O14727 1248 aa12.35□□□□□ -0.43
SMPD4-208ENST00000439029 CCND3P30281 292 aaPredicted RBP12.35□□□□□ -0.43
SMPD4-208ENST00000439029 ATN1P54259 1190 aaPredicted RBP12.35□□□□□ -0.43
SMPD4-208ENST00000439029 FLIIQ13045 1269 aa12.35□□□□□ -0.43
SMPD4-208ENST00000439029 FAM110CQ1W6H9 321 aa12.35□□□□□ -0.43
SMPD4-208ENST00000439029 HHIPL2Q6UWX4 724 aa12.35□□□□□ -0.43
SMPD4-208ENST00000439029 SPINK5Q9NQ38 1064 aaPredicted RBP12.35□□□□□ -0.43
SMPD4-208ENST00000439029 FAM198AQ9UFP1 575 aa12.35□□□□□ -0.43
SMPD4-208ENST00000439029 SLC45A1Q9Y2W3 748 aa12.35□□□□□ -0.43
SMPD4-208ENST00000439029 F6X3S4 739 aa12.34□□□□□ -0.43
SMPD4-208ENST00000439029 TJAP1Q5JTD0 557 aa12.34□□□□□ -0.43
SMPD4-208ENST00000439029 MRIQ9BWK5 157 aa12.34□□□□□ -0.43
SMPD4-208ENST00000439029 SENP6Q9GZR1 1112 aaPredicted RBP12.34□□□□□ -0.43
SMPD4-208ENST00000439029 USP40Q9NVE5 1235 aa12.34□□□□□ -0.43
SMPD4-208ENST00000439029 AGTPBP1Q9UPW5 1226 aa12.34□□□□□ -0.43
SMPD4-208ENST00000439029 DAGLAQ9Y4D2 1042 aa12.34□□□□□ -0.43
SMPD4-208ENST00000439029 CAVIN4Q5BKX8 364 aa12.33□□□□□ -0.44
SMPD4-208ENST00000439029 CHMP4AQ9BY43 222 aa12.33□□□□□ -0.44
SMPD4-208ENST00000439029 LRRFIP2Q9Y608 721 aaKnown RBP12.33□□□□□ -0.44
SMPD4-208ENST00000439029 MAST3O60307 1309 aa12.33□□□□□ -0.44
SMPD4-208ENST00000439029 PTPRFP10586 1907 aa12.33□□□□□ -0.44
SMPD4-208ENST00000439029 LAMA2P24043 3122 aaKnown RBP12.32□□□□□ -0.44
SMPD4-208ENST00000439029 CALD1Q05682 793 aaKnown RBP12.32□□□□□ -0.44
SMPD4-208ENST00000439029 CACNB2Q08289 660 aaPredicted RBP12.32□□□□□ -0.44
SMPD4-208ENST00000439029 MAP3K12Q12852 859 aa12.32□□□□□ -0.44
SMPD4-208ENST00000439029 CCL14Q16627 93 aa12.32□□□□□ -0.44
SMPD4-208ENST00000439029 TWISTNBQ3B726 338 aaPredicted RBP12.32□□□□□ -0.44
SMPD4-208ENST00000439029 LRRC24Q50LG9 513 aa12.32□□□□□ -0.44
SMPD4-208ENST00000439029 MAP3K21Q5TCX8 1036 aa12.32□□□□□ -0.44
SMPD4-208ENST00000439029 LHX8Q68G74 356 aa12.32□□□□□ -0.44
SMPD4-208ENST00000439029 ZSCAN29Q8IWY8 852 aaPredicted RBP12.32□□□□□ -0.44
SMPD4-208ENST00000439029 PPM1EQ8WY54 764 aa12.32□□□□□ -0.44
SMPD4-208ENST00000439029 ATRNL1Q5VV63 1379 aa12.31□□□□□ -0.44
SMPD4-208ENST00000439029 RGS3P49796 1198 aa12.31□□□□□ -0.44
SMPD4-208ENST00000439029 RALBP1Q15311 655 aa12.31□□□□□ -0.44
SMPD4-208ENST00000439029 METTL24Q5JXM2 366 aa12.31□□□□□ -0.44
SMPD4-208ENST00000439029 SH3BP5LQ7L8J4 393 aa12.31□□□□□ -0.44
SMPD4-208ENST00000439029 PRDM5Q9NQX1 630 aaPredicted RBP12.31□□□□□ -0.44
SMPD4-208ENST00000439029 PRKAG2Q9UGJ0 569 aa12.31□□□□□ -0.44
SMPD4-208ENST00000439029 PNMA3Q9UL41 463 aa12.31□□□□□ -0.44
SMPD4-208ENST00000439029 PLXNB2O15031 1838 aa12.31□□□□□ -0.44
SMPD4-208ENST00000439029 FAM196BA6NMK8 535 aa12.3□□□□□ -0.44
SMPD4-208ENST00000439029 ZKSCAN1P17029 563 aaPredicted RBP12.3□□□□□ -0.44
SMPD4-208ENST00000439029 ZEB1P37275 1124 aaPredicted RBP12.3□□□□□ -0.44
SMPD4-208ENST00000439029 SPP2Q13103 211 aa12.3□□□□□ -0.44
SMPD4-208ENST00000439029 BEND3Q5T5X7 828 aa12.3□□□□□ -0.44
SMPD4-208ENST00000439029 ASCC2Q9H1I8 757 aaPredicted RBP12.3□□□□□ -0.44
SMPD4-208ENST00000439029 ATP11BQ9Y2G3 1177 aa12.3□□□□□ -0.44
SMPD4-208ENST00000439029 NCOR1O75376 2440 aa12.3□□□□□ -0.44
SMPD4-208ENST00000439029 PHIPQ8WWQ0 1821 aa12.3□□□□□ -0.44
SMPD4-208ENST00000439029 DDTLA6NHG4 134 aaPredicted RBP12.29□□□□□ -0.44
SMPD4-208ENST00000439029 GRM8O00222 908 aa12.29□□□□□ -0.44
SMPD4-208ENST00000439029 PRDX5P30044 214 aa12.29□□□□□ -0.44
SMPD4-208ENST00000439029 HOXD11P31277 338 aaPredicted RBP12.29□□□□□ -0.44
SMPD4-208ENST00000439029 GCLCP48506 637 aaPredicted RBP12.29□□□□□ -0.44
SMPD4-208ENST00000439029 HMGCS2P54868 508 aa12.29□□□□□ -0.44
SMPD4-208ENST00000439029 RTP1P59025 263 aa12.29□□□□□ -0.44
SMPD4-208ENST00000439029 GRIN2CQ14957 1233 aa12.29□□□□□ -0.44
SMPD4-208ENST00000439029 BADQ92934 168 aa12.29□□□□□ -0.44
SMPD4-208ENST00000439029 NUDT12Q9BQG2 462 aa12.29□□□□□ -0.44
SMPD4-208ENST00000439029 SUGT1Q9Y2Z0 365 aa12.29□□□□□ -0.44
SMPD4-208ENST00000439029 MROH5Q6ZUA9 1318 aa12.29□□□□□ -0.44
SMPD4-208ENST00000439029 CDH23Q9H251 3354 aa12.29□□□□□ -0.44
SMPD4-208ENST00000439029 CTNND1O60716 968 aaKnown RBP12.28□□□□□ -0.44
SMPD4-208ENST00000439029 SMAD3P84022 425 aaKnown RBP12.28□□□□□ -0.44
SMPD4-208ENST00000439029 PICALMQ13492 652 aa12.28□□□□□ -0.44
SMPD4-208ENST00000439029 KLHDC4Q8TBB5 520 aa12.28□□□□□ -0.44
SMPD4-208ENST00000439029 SUCLG2Q96I99 432 aa12.28□□□□□ -0.44
SMPD4-208ENST00000439029 C9orf78Q9NZ63 289 aaPredicted RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms