RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 DNAJC25Q9H1X3 360 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 SYNRGQ9UMZ2 1314 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 DAPK3O43293 454 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 CTAGE15A4D2H0 777 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 CTAGE8P0CG41 777 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 STX17P56962 302 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 CTAGE6Q86UF2 777 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 CTAGE4Q8IX94 777 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 FAM169AQ9Y6X4 670 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 TRAPPC8Q9Y2L5 1435 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 ATP8B2P98198 1209 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 LINS1Q8NG48 757 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 GTPBP4Q9BZE4 634 aaKnown RBP13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 CALUO43852 315 aaPredicted RBP13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 GMNNO75496 209 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 TYRO3Q06418 890 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 BMS1Q14692 1282 aaKnown RBP13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 CNNM4Q6P4Q7 775 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 CCT6BQ92526 530 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 CEP170Q5SW79 1584 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 SLC1A4P43007 532 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 INF2Q27J81 1249 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 CCDC129Q6ZRS4 1044 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 METTL13Q8N6R0 699 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 ANKRD44Q8N8A2 993 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 AFDNP55196 1824 aaKnown RBP13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 ZNF174Q15697 407 aa13.5□□□□□ -0.25
CCDC88A-207ENST00000436346 TTC6Q86TZ1 520 aa13.5□□□□□ -0.25
CCDC88A-207ENST00000436346 HAUS3Q68CZ6 603 aa13.5□□□□□ -0.25
CCDC88A-207ENST00000436346 CERS3Q8IU89 383 aa13.5□□□□□ -0.25
CCDC88A-207ENST00000436346 TRIM7Q9C029 511 aa13.5□□□□□ -0.25
CCDC88A-207ENST00000436346 ELP1O95163 1332 aa13.5□□□□□ -0.25
CCDC88A-207ENST00000436346 IBTKQ9P2D0 1353 aaPredicted RBP13.5□□□□□ -0.25
CCDC88A-207ENST00000436346 SYNMO15061 1565 aa13.5□□□□□ -0.25
CCDC88A-207ENST00000436346 UIMC1Q96RL1 719 aa13.5□□□□□ -0.25
CCDC88A-207ENST00000436346 LZTFL1Q9NQ48 299 aa13.5□□□□□ -0.25
CCDC88A-207ENST00000436346 TRAF5O00463 557 aa13.5□□□□□ -0.25
CCDC88A-207ENST00000436346 IQUBQ8NA54 791 aa13.5□□□□□ -0.25
CCDC88A-207ENST00000436346 FAM200AQ8TCP9 573 aa13.5□□□□□ -0.25
CCDC88A-207ENST00000436346 ZNF830Q96NB3 372 aaPredicted RBP13.5□□□□□ -0.25
CCDC88A-207ENST00000436346 BIRC2Q13490 618 aa13.5□□□□□ -0.25
CCDC88A-207ENST00000436346 AZI2Q9H6S1 392 aa13.5□□□□□ -0.25
CCDC88A-207ENST00000436346 CALCRLQ16602 461 aa13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 MAEAQ7L5Y9 396 aa13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 IRX3P78415 501 aaPredicted RBP13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 UBLCP1Q8WVY7 318 aaPredicted RBP13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 HAUS2Q9NVX0 235 aa13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 ATP10AO60312 1499 aa13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 HOXC9P31274 260 aa13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 CLTCQ00610 1675 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 DHX32Q7L7V1 743 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 DNAI1Q9UI46 699 aa13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 USP21Q9UK80 565 aa13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 CCDC160A6NGH7 325 aa13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 LPXNO60711 386 aa13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 CDCA7Q9BWT1 371 aaPredicted RBP13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 MRPL44Q9H9J2 332 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 UBL4BQ8N7F7 174 aa13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 ARMT1Q9H993 441 aa13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 TTLL3Q9Y4R7 772 aa13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 TPD52P55327 224 aaPredicted RBP13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 SBNO1A3KN83 1393 aa13.49□□□□□ -0.25
CCDC88A-207ENST00000436346 ZBTB9Q96C00 473 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 EPSTI1Q96J88 318 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 PPP1R9BQ96SB3 815 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 ARHGEF35A5YM69 484 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 GCP02774 474 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 CEP85Q6P2H3 762 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 WDR66Q8TBY9 1149 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 DACT1Q9NYF0 836 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 TBC1D7Q9P0N9 293 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 TAF5LO75529 589 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 AK2P54819 239 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 SH3TC1Q8TE82 1336 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 B4E1Z4 1266 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 CALCOCO1Q9P1Z2 691 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 MLH3Q9UHC1 1453 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 SPOPO43791 374 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 LIN9Q5TKA1 542 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 NAP1L4Q99733 375 aaKnown RBP13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 EXOC7Q9UPT5 735 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 MYH3P11055 1940 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 KLHL40Q2TBA0 621 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 GSDMBQ8TAX9 411 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 HIBADHP31937 336 aaKnown RBP13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 TRERF1Q96PN7 1200 aa13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 MTRF1LQ9UGC7 380 aaKnown RBP13.48□□□□□ -0.25
CCDC88A-207ENST00000436346 TET3O43151 1660 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 OPA1O60313 960 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 ZNF790Q6PG37 636 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 CHD4Q14839 1912 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 A0A1B0GUL7 405 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 CARD10Q9BWT7 1032 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 ALDH3A1P30838 453 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 PIK3AP1Q6ZUJ8 805 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 KCNK9Q9NPC2 374 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 GCNT3O95395 438 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 CPXCR1Q8N123 301 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 UVSSAQ2YD98 709 aa13.47□□□□□ -0.25
CCDC88A-207ENST00000436346 ZNF594Q96JF6 807 aaPredicted RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms