RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 DDX60Q8IY21 1712 aaKnown RBP24.37■■□□□ 1.49
USP48-205ENST00000421625 ADORA1P30542 326 aa24.37■■□□□ 1.49
USP48-205ENST00000421625 ZNF827Q17R98 1081 aa24.37■■□□□ 1.49
USP48-205ENST00000421625 LMAN1P49257 510 aa24.37■■□□□ 1.49
USP48-205ENST00000421625 MAN1B1Q9UKM7 699 aa24.37■■□□□ 1.49
USP48-205ENST00000421625 ZMYM6O95789 1325 aa24.36■■□□□ 1.49
USP48-205ENST00000421625 UBE2Q2LH0YL09 131 aa24.36■■□□□ 1.49
USP48-205ENST00000421625 ZNF213O14771 459 aa24.36■■□□□ 1.49
USP48-205ENST00000421625 SCARF1Q14162 830 aa24.36■■□□□ 1.49
USP48-205ENST00000421625 CHRNA2Q15822 529 aa24.36■■□□□ 1.49
USP48-205ENST00000421625 RAPGEF4Q8WZA2 1011 aa24.36■■□□□ 1.49
USP48-205ENST00000421625 SENP2Q9HC62 589 aa24.36■■□□□ 1.49
USP48-205ENST00000421625 CPDO75976 1380 aa24.36■■□□□ 1.49
USP48-205ENST00000421625 A0A0U1RQJ8 604 aa24.36■■□□□ 1.49
USP48-205ENST00000421625 METAP2P50579 478 aaKnown RBP eCLIP24.36■■□□□ 1.49
USP48-205ENST00000421625 MDM2Q00987 491 aaPredicted RBP24.36■■□□□ 1.49
USP48-205ENST00000421625 ATRIPQ8WXE1 791 aa24.36■■□□□ 1.49
USP48-205ENST00000421625 CUTAO60888 179 aa24.35■■□□□ 1.49
USP48-205ENST00000421625 PRR29P0C7W0 189 aa24.35■■□□□ 1.49
USP48-205ENST00000421625 ZNF18P17022 549 aa24.35■■□□□ 1.49
USP48-205ENST00000421625 NBPF3Q9H094 633 aa24.35■■□□□ 1.49
USP48-205ENST00000421625 RGPD5Q99666 1765 aa24.35■■□□□ 1.49
USP48-205ENST00000421625 LMTK3Q96Q04 1460 aa24.35■■□□□ 1.49
USP48-205ENST00000421625 SOWAHDA6NJG2 315 aa24.34■■□□□ 1.49
USP48-205ENST00000421625 PI16Q6UXB8 463 aa24.34■■□□□ 1.49
USP48-205ENST00000421625 CYB5R4Q7L1T6 521 aa24.34■■□□□ 1.49
USP48-205ENST00000421625 CADPS2Q86UW7 1296 aa24.34■■□□□ 1.49
USP48-205ENST00000421625 LZTFL1Q9NQ48 299 aa24.34■■□□□ 1.49
USP48-205ENST00000421625 PUF60Q9UHX1 559 aaKnown RBP24.34■■□□□ 1.49
USP48-205ENST00000421625 CCDC151A5D8V7 595 aa24.34■■□□□ 1.49
USP48-205ENST00000421625 MAP2K7O14733 419 aa24.34■■□□□ 1.49
USP48-205ENST00000421625 TTC39AQ5SRH9 613 aa24.34■■□□□ 1.49
USP48-205ENST00000421625 AK7Q96M32 723 aa24.34■■□□□ 1.49
USP48-205ENST00000421625 SPEF2Q9C093 1822 aa24.34■■□□□ 1.49
USP48-205ENST00000421625 TRIM66O15016 1216 aa24.34■■□□□ 1.49
USP48-205ENST00000421625 GRIN1Q05586 938 aa24.34■■□□□ 1.49
USP48-205ENST00000421625 EXOC4Q96A65 974 aa24.34■■□□□ 1.49
USP48-205ENST00000421625 SAMSN1Q9NSI8 373 aaKnown RBP24.34■■□□□ 1.49
USP48-205ENST00000421625 CHMP4BP1P59074 171 aa24.33■■□□□ 1.49
USP48-205ENST00000421625 MICU3Q86XE3 530 aa24.33■■□□□ 1.49
USP48-205ENST00000421625 GRAMD1CQ8IYS0 662 aa24.33■■□□□ 1.49
USP48-205ENST00000421625 MED15Q96RN5 788 aa24.33■■□□□ 1.49
USP48-205ENST00000421625 TEX13AQ9BXU3 409 aaPredicted RBP24.33■■□□□ 1.49
USP48-205ENST00000421625 ANGEL1Q9UNK9 670 aaKnown RBP24.33■■□□□ 1.49
USP48-205ENST00000421625 GPAA1O43292 621 aa24.33■■□□□ 1.48
USP48-205ENST00000421625 TTLL7Q6ZT98 887 aa24.33■■□□□ 1.48
USP48-205ENST00000421625 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.33■■□□□ 1.48
USP48-205ENST00000421625 ANKZF1Q9H8Y5 726 aa24.33■■□□□ 1.48
USP48-205ENST00000421625 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.33■■□□□ 1.48
USP48-205ENST00000421625 NLRP2Q9NX02 1062 aa24.33■■□□□ 1.48
USP48-205ENST00000421625 CWC25Q9NXE8 425 aaPredicted RBP24.33■■□□□ 1.48
USP48-205ENST00000421625 RAI14Q9P0K7 980 aa24.33■■□□□ 1.48
USP48-205ENST00000421625 ZAP70P43403 619 aa24.32■■□□□ 1.48
USP48-205ENST00000421625 APPBP2Q92624 585 aa24.32■■□□□ 1.48
USP48-205ENST00000421625 PDE11AQ9HCR9 933 aa24.32■■□□□ 1.48
USP48-205ENST00000421625 MCM6Q14566 821 aa24.32■■□□□ 1.48
USP48-205ENST00000421625 POSTNQ15063 836 aa24.32■■□□□ 1.48
USP48-205ENST00000421625 TBC1D10CQ8IV04 446 aa24.32■■□□□ 1.48
USP48-205ENST00000421625 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.32■■□□□ 1.48
USP48-205ENST00000421625 ZFP91Q96JP5 570 aaPredicted RBP24.32■■□□□ 1.48
USP48-205ENST00000421625 ZNF335Q9H4Z2 1342 aaPredicted RBP24.32■■□□□ 1.48
USP48-205ENST00000421625 BRD3Q15059 726 aa24.31■■□□□ 1.48
USP48-205ENST00000421625 JAKMIP3Q5VZ66 844 aa24.31■■□□□ 1.48
USP48-205ENST00000421625 C10orf67Q8IYJ2 551 aa24.31■■□□□ 1.48
USP48-205ENST00000421625 XAGE2Q96GT9 111 aa24.31■■□□□ 1.48
USP48-205ENST00000421625 MYL10Q9BUA6 226 aa24.31■■□□□ 1.48
USP48-205ENST00000421625 MYO1CO00159 1063 aa24.31■■□□□ 1.48
USP48-205ENST00000421625 RANBP6O60518 1105 aaKnown RBP24.31■■□□□ 1.48
USP48-205ENST00000421625 ZFYP08048 801 aaPredicted RBP24.31■■□□□ 1.48
USP48-205ENST00000421625 APOA5Q6Q788 366 aa24.31■■□□□ 1.48
USP48-205ENST00000421625 SRGAP1Q7Z6B7 1085 aa24.31■■□□□ 1.48
USP48-205ENST00000421625 STK11IPQ8N1F8 1099 aa24.31■■□□□ 1.48
USP48-205ENST00000421625 KRI1Q8N9T8 703 aaKnown RBP24.31■■□□□ 1.48
USP48-205ENST00000421625 GOLGA5Q8TBA6 731 aa24.31■■□□□ 1.48
USP48-205ENST00000421625 CEP126Q9P2H0 1117 aa24.31■■□□□ 1.48
USP48-205ENST00000421625 ECM29Q5VYK3 1845 aa24.3■■□□□ 1.48
USP48-205ENST00000421625 NBPF26B4DH59 902 aa24.3■■□□□ 1.48
USP48-205ENST00000421625 CCDC175P0C221 793 aa24.3■■□□□ 1.48
USP48-205ENST00000421625 NBPF14Q5TI25 921 aa24.3■■□□□ 1.48
USP48-205ENST00000421625 NBPF10Q6P3W6 841 aaKnown RBP24.3■■□□□ 1.48
USP48-205ENST00000421625 RAD9BQ6WBX8 426 aa24.3■■□□□ 1.48
USP48-205ENST00000421625 NBPF15Q8N660 670 aa24.3■■□□□ 1.48
USP48-205ENST00000421625 PNKPQ96T60 521 aa24.3■■□□□ 1.48
USP48-205ENST00000421625 PSD3Q9NYI0 1048 aa24.3■■□□□ 1.48
USP48-205ENST00000421625 VPS18Q9P253 973 aa24.3■■□□□ 1.48
USP48-205ENST00000421625 TRPM3Q9HCF6 1732 aaPredicted RBP24.3■■□□□ 1.48
USP48-205ENST00000421625 SH2B2O14492 632 aaPredicted RBP24.3■■□□□ 1.48
USP48-205ENST00000421625 ENOX1Q8TC92 643 aaKnown RBP24.3■■□□□ 1.48
USP48-205ENST00000421625 SUGCTQ9HAC7 445 aa24.3■■□□□ 1.48
USP48-205ENST00000421625 SERTAD1Q9UHV2 236 aa24.3■■□□□ 1.48
USP48-205ENST00000421625 WDR19Q8NEZ3 1342 aa24.3■■□□□ 1.48
USP48-205ENST00000421625 CDKL5O76039 1030 aa24.3■■□□□ 1.48
USP48-205ENST00000421625 TFRCP02786 760 aaKnown RBP24.3■■□□□ 1.48
USP48-205ENST00000421625 BEND6Q5SZJ8 279 aaPredicted RBP24.3■■□□□ 1.48
USP48-205ENST00000421625 POLR2DO15514 142 aaKnown RBP24.29■■□□□ 1.48
USP48-205ENST00000421625 TEX33O43247 280 aa24.29■■□□□ 1.48
USP48-205ENST00000421625 TRDNQ13061 729 aa24.29■■□□□ 1.48
USP48-205ENST00000421625 NR1I3Q14994 352 aa24.29■■□□□ 1.48
USP48-205ENST00000421625 RASSF4Q9H2L5 321 aa24.29■■□□□ 1.48
USP48-205ENST00000421625 SEC31BQ9NQW1 1179 aa24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms