RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 CCDC12Q8WUD4 166 aaPredicted RBP9.76□□□□□ -0.85
USP54-203ENST00000418501 TEKT1Q969V4 418 aa9.76□□□□□ -0.85
USP54-203ENST00000418501 AGXT2Q9BYV1 514 aa9.76□□□□□ -0.85
USP54-203ENST00000418501 AATFQ9NY61 560 aaKnown RBP eCLIP9.76□□□□□ -0.85
USP54-203ENST00000418501 GSG1L2A8MUP6 293 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 SH2B2O14492 632 aaPredicted RBP9.75□□□□□ -0.85
USP54-203ENST00000418501 SRGNP10124 158 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 CCDC93Q567U6 631 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 TRIM44Q96DX7 344 aaPredicted RBP9.75□□□□□ -0.85
USP54-203ENST00000418501 DDX11Q96FC9 970 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 TCEANC2Q96MN5 208 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 LY75O60449 1722 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 TSPY3P0CV98 308 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 TSPY8P0CW00 308 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 FKBP1AP62942 108 aaKnown RBP9.75□□□□□ -0.85
USP54-203ENST00000418501 STK38Q15208 465 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 SGMS1Q86VZ5 419 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 MROH7-TTC4A0A0A0MT08 1334 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 CTAGE5O15320 804 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 FIBPO43427 364 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 ORC4O43929 436 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 EVCP57679 992 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 C3orf67Q6ZVT6 689 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 DEXIO95424 95 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 RBM5P52756 815 aaKnown RBP eCLIP9.75□□□□□ -0.85
USP54-203ENST00000418501 DDR1Q08345 913 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 TRAF1Q13077 416 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 FAM177A1Q8N128 213 aaPredicted RBP9.75□□□□□ -0.85
USP54-203ENST00000418501 DDX19AQ9NUU7 478 aaKnown RBP9.75□□□□□ -0.85
USP54-203ENST00000418501 SWAP70Q9UH65 585 aa9.75□□□□□ -0.85
USP54-203ENST00000418501 FAM205AQ6ZU69 1335 aa9.74□□□□□ -0.85
USP54-203ENST00000418501 CCDC183Q5T5S1 534 aa9.74□□□□□ -0.85
USP54-203ENST00000418501 MICU3Q86XE3 530 aa9.74□□□□□ -0.85
USP54-203ENST00000418501 ZSCAN10Q96SZ4 725 aaPredicted RBP9.74□□□□□ -0.85
USP54-203ENST00000418501 LRRC2Q9BYS8 371 aa9.74□□□□□ -0.85
USP54-203ENST00000418501 RIMBP2O15034 1052 aa9.74□□□□□ -0.85
USP54-203ENST00000418501 HDLBPQ00341 1268 aaKnown RBP9.74□□□□□ -0.85
USP54-203ENST00000418501 OGFOD1Q8N543 542 aa9.74□□□□□ -0.85
USP54-203ENST00000418501 TTLL6Q8N841 843 aa9.74□□□□□ -0.85
USP54-203ENST00000418501 ALG1Q9BT22 464 aa9.74□□□□□ -0.85
USP54-203ENST00000418501 STK36Q9NRP7 1315 aa9.74□□□□□ -0.85
USP54-203ENST00000418501 USP17L12C9JPN9 530 aa9.74□□□□□ -0.85
USP54-203ENST00000418501 USP17L21D6R901 530 aa9.74□□□□□ -0.85
USP54-203ENST00000418501 MYO1BO43795 1136 aa9.74□□□□□ -0.85
USP54-203ENST00000418501 TPM4P67936 248 aa9.74□□□□□ -0.85
USP54-203ENST00000418501 GTF2IP78347 998 aa9.74□□□□□ -0.85
USP54-203ENST00000418501 TMEM87AQ8NBN3 555 aa9.74□□□□□ -0.85
USP54-203ENST00000418501 KCNG4Q8TDN1 519 aa9.74□□□□□ -0.85
USP54-203ENST00000418501 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.74□□□□□ -0.85
USP54-203ENST00000418501 BTDP43251 543 aa9.73□□□□□ -0.85
USP54-203ENST00000418501 CTDSPL2Q05D32 466 aa9.73□□□□□ -0.85
USP54-203ENST00000418501 CAVIN1Q6NZI2 390 aaKnown RBP9.73□□□□□ -0.85
USP54-203ENST00000418501 CRACR2BQ8N4Y2 399 aaPredicted RBP9.73□□□□□ -0.85
USP54-203ENST00000418501 SMARCC2Q8TAQ2 1214 aa9.73□□□□□ -0.85
USP54-203ENST00000418501 MTMR6Q9Y217 621 aa9.73□□□□□ -0.85
USP54-203ENST00000418501 CAVIN2O95810 425 aa9.73□□□□□ -0.85
USP54-203ENST00000418501 EN1Q05925 392 aaPredicted RBP9.73□□□□□ -0.85
USP54-203ENST00000418501 CCDC148Q8NFR7 591 aa9.73□□□□□ -0.85
USP54-203ENST00000418501 LARP6Q9BRS8 491 aaKnown RBP9.73□□□□□ -0.85
USP54-203ENST00000418501 ELP1O95163 1332 aa9.73□□□□□ -0.85
USP54-203ENST00000418501 CALML3P27482 149 aa9.73□□□□□ -0.85
USP54-203ENST00000418501 SCRN1Q12765 414 aa9.73□□□□□ -0.85
USP54-203ENST00000418501 ZNF827Q17R98 1081 aa9.73□□□□□ -0.85
USP54-203ENST00000418501 FAM163AQ96GL9 167 aaPredicted RBP9.73□□□□□ -0.85
USP54-203ENST00000418501 MYH14Q7Z406 1995 aaKnown RBP9.73□□□□□ -0.85
USP54-203ENST00000418501 MSL1Q68DK7 614 aa9.72□□□□□ -0.85
USP54-203ENST00000418501 NSUN7Q8NE18 718 aaKnown RBP9.72□□□□□ -0.85
USP54-203ENST00000418501 DHX36Q9H2U1 1008 aaKnown RBP9.72□□□□□ -0.85
USP54-203ENST00000418501 GOLGA6L6A8MZA4 724 aa9.72□□□□□ -0.85
USP54-203ENST00000418501 KINO60870 393 aaKnown RBP9.72□□□□□ -0.85
USP54-203ENST00000418501 APOA5Q6Q788 366 aa9.72□□□□□ -0.85
USP54-203ENST00000418501 DGKHQ86XP1 1220 aa9.72□□□□□ -0.85
USP54-203ENST00000418501 JDP2Q8WYK2 163 aa9.72□□□□□ -0.85
USP54-203ENST00000418501 PYM1Q9BRP8 204 aaKnown RBP9.72□□□□□ -0.85
USP54-203ENST00000418501 HHIPL2Q6UWX4 724 aa9.72□□□□□ -0.85
USP54-203ENST00000418501 STOX1Q6ZVD7 989 aa9.72□□□□□ -0.85
USP54-203ENST00000418501 CCDC17Q96LX7 622 aa9.72□□□□□ -0.85
USP54-203ENST00000418501 MRIQ9BWK5 157 aa9.72□□□□□ -0.85
USP54-203ENST00000418501 SLC26A6Q9BXS9 759 aa9.72□□□□□ -0.85
USP54-203ENST00000418501 TSPY26PQ9H489 355 aa9.72□□□□□ -0.85
USP54-203ENST00000418501 TTF2Q9UNY4 1162 aaKnown RBP9.72□□□□□ -0.85
USP54-203ENST00000418501 USP17L3A6NCW0 530 aa9.72□□□□□ -0.85
USP54-203ENST00000418501 USP17L4A6NCW7 530 aa9.72□□□□□ -0.85
USP54-203ENST00000418501 SNAP23O00161 211 aa9.72□□□□□ -0.85
USP54-203ENST00000418501 STRIP1Q5VSL9 837 aa9.72□□□□□ -0.85
USP54-203ENST00000418501 SMIM5Q71RC9 77 aa9.72□□□□□ -0.85
USP54-203ENST00000418501 USP17L1Q7RTZ2 530 aa9.72□□□□□ -0.85
USP54-203ENST00000418501 ZNF654Q8IZM8 581 aa9.72□□□□□ -0.85
USP54-203ENST00000418501 SDR42E1Q8WUS8 393 aa9.72□□□□□ -0.85
USP54-203ENST00000418501 RIOK1Q9BRS2 568 aaKnown RBP9.72□□□□□ -0.85
USP54-203ENST00000418501 DCP1AQ9NPI6 582 aaPredicted RBP9.72□□□□□ -0.85
USP54-203ENST00000418501 SEC63Q9UGP8 760 aaKnown RBP9.72□□□□□ -0.85
USP54-203ENST00000418501 COL24A1Q17RW2 1714 aa9.71□□□□□ -0.85
USP54-203ENST00000418501 IFNAR1P17181 557 aa9.71□□□□□ -0.85
USP54-203ENST00000418501 EZH2Q15910 746 aaKnown RBP9.71□□□□□ -0.85
USP54-203ENST00000418501 SASS6Q6UVJ0 657 aa9.71□□□□□ -0.85
USP54-203ENST00000418501 TBC1D10CQ8IV04 446 aa9.71□□□□□ -0.85
USP54-203ENST00000418501 GPR75-ASB3A0A0A6YYF3 556 aa9.71□□□□□ -0.85
USP54-203ENST00000418501 PPIP5K2O43314 1243 aa9.71□□□□□ -0.85
USP54-203ENST00000418501 FOXD4L6Q3SYB3 417 aaPredicted RBP9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms