RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 GORABQ5T7V8 394 aa14.31□□□□□ -0.12
USP4-204ENST00000416417 C17orf99Q6UX52 265 aa14.31□□□□□ -0.12
USP4-204ENST00000416417 ERICH6Q7L0X2 663 aa14.31□□□□□ -0.12
USP4-204ENST00000416417 ZNF333Q96JL9 665 aa14.31□□□□□ -0.12
USP4-204ENST00000416417 IDI2Q9BXS1 227 aa14.31□□□□□ -0.12
USP4-204ENST00000416417 MROH7-TTC4A0A0A0MT08 1334 aa14.3□□□□□ -0.12
USP4-204ENST00000416417 RFX7Q2KHR2 1363 aa14.3□□□□□ -0.12
USP4-204ENST00000416417 ENTPD3O75355 529 aa14.3□□□□□ -0.12
USP4-204ENST00000416417 CYP2C8P10632 490 aa14.3□□□□□ -0.12
USP4-204ENST00000416417 KIF22Q14807 665 aa14.3□□□□□ -0.12
USP4-204ENST00000416417 GPAT2Q6NUI2 795 aa14.3□□□□□ -0.12
USP4-204ENST00000416417 ANKRD23Q86SG2 305 aa14.3□□□□□ -0.12
USP4-204ENST00000416417 MIER1Q8N108 512 aa14.3□□□□□ -0.12
USP4-204ENST00000416417 SPATA5Q8NB90 893 aa14.3□□□□□ -0.12
USP4-204ENST00000416417 SNRKQ9NRH2 765 aa14.3□□□□□ -0.12
USP4-204ENST00000416417 ZHX2Q9Y6X8 837 aa14.3□□□□□ -0.12
USP4-204ENST00000416417 PDE4DIPQ5VU43 2346 aa14.3□□□□□ -0.12
USP4-204ENST00000416417 MKI67P46013 3256 aaKnown RBP14.3□□□□□ -0.12
USP4-204ENST00000416417 PTPRAP18433 802 aa14.29□□□□□ -0.12
USP4-204ENST00000416417 RHBDL3P58872 404 aa14.29□□□□□ -0.12
USP4-204ENST00000416417 HNRNPUQ00839 825 aaKnown RBP eCLIP14.29□□□□□ -0.12
USP4-204ENST00000416417 G3BP1Q13283 466 aaKnown RBP eCLIP14.29□□□□□ -0.12
USP4-204ENST00000416417 SLC4A8Q2Y0W8 1093 aa14.29□□□□□ -0.12
USP4-204ENST00000416417 SPTY2D1Q68D10 685 aaPredicted RBP14.29□□□□□ -0.12
USP4-204ENST00000416417 SCYL3Q8IZE3 742 aa14.29□□□□□ -0.12
USP4-204ENST00000416417 ZCCHC17Q9NP64 241 aaKnown RBP14.29□□□□□ -0.12
USP4-204ENST00000416417 RAI14Q9P0K7 980 aa14.29□□□□□ -0.12
USP4-204ENST00000416417 PDS5AQ29RF7 1337 aaKnown RBP14.28□□□□□ -0.12
USP4-204ENST00000416417 ADGRA2Q96PE1 1338 aa14.28□□□□□ -0.12
USP4-204ENST00000416417 MCAMP43121 646 aa14.28□□□□□ -0.12
USP4-204ENST00000416417 PSMC4P43686 418 aa14.28□□□□□ -0.12
USP4-204ENST00000416417 ARHGEF6Q15052 776 aa14.28□□□□□ -0.12
USP4-204ENST00000416417 GADL1Q6ZQY3 521 aa14.28□□□□□ -0.12
USP4-204ENST00000416417 FAM163AQ96GL9 167 aaPredicted RBP14.28□□□□□ -0.12
USP4-204ENST00000416417 TRIM47Q96LD4 638 aa14.28□□□□□ -0.12
USP4-204ENST00000416417 TMEM106CQ9BVX2 250 aa14.28□□□□□ -0.12
USP4-204ENST00000416417 PICK1Q9NRD5 415 aa14.28□□□□□ -0.12
USP4-204ENST00000416417 BRCA2P51587 3418 aa14.28□□□□□ -0.12
USP4-204ENST00000416417 DOCK2Q92608 1830 aa14.28□□□□□ -0.12
USP4-204ENST00000416417 GPR75-ASB3A0A0A6YYF3 556 aa14.27□□□□□ -0.12
USP4-204ENST00000416417 FMNL1O95466 1100 aaPredicted RBP14.27□□□□□ -0.12
USP4-204ENST00000416417 ZKSCAN2Q63HK3 967 aa14.27□□□□□ -0.12
USP4-204ENST00000416417 SLF2Q8IX21 1173 aa14.27□□□□□ -0.12
USP4-204ENST00000416417 NSUN4Q96CB9 384 aaKnown RBP14.27□□□□□ -0.12
USP4-204ENST00000416417 TRIM75PA6NK02 468 aa14.26□□□□□ -0.13
USP4-204ENST00000416417 RLBP1P12271 317 aa14.26□□□□□ -0.13
USP4-204ENST00000416417 OSBPP22059 807 aa14.26□□□□□ -0.13
USP4-204ENST00000416417 ARID4AP29374 1257 aaPredicted RBP14.26□□□□□ -0.13
USP4-204ENST00000416417 MTFR1Q15390 333 aa14.26□□□□□ -0.13
USP4-204ENST00000416417 NBPF11Q86T75 865 aa14.26□□□□□ -0.13
USP4-204ENST00000416417 DBNDD2Q9BQY9 259 aa14.26□□□□□ -0.13
USP4-204ENST00000416417 AFG3L2Q9Y4W6 797 aa14.26□□□□□ -0.13
USP4-204ENST00000416417 CXCL11O14625 94 aa14.25□□□□□ -0.13
USP4-204ENST00000416417 ZBTB22O15209 634 aa14.25□□□□□ -0.13
USP4-204ENST00000416417 OS9Q13438 667 aaPredicted RBP14.25□□□□□ -0.13
USP4-204ENST00000416417 RRP1BQ14684 758 aaKnown RBP14.25□□□□□ -0.13
USP4-204ENST00000416417 SH3RF3Q8TEJ3 882 aaPredicted RBP14.25□□□□□ -0.13
USP4-204ENST00000416417 LRP2BPQ9P2M1 347 aa14.25□□□□□ -0.13
USP4-204ENST00000416417 A0A0G2JLL6 359 aaPredicted RBP14.25□□□□□ -0.13
USP4-204ENST00000416417 MAP3K10Q02779 954 aa14.25□□□□□ -0.13
USP4-204ENST00000416417 POLA2Q14181 598 aa14.25□□□□□ -0.13
USP4-204ENST00000416417 TTC39AQ5SRH9 613 aa14.25□□□□□ -0.13
USP4-204ENST00000416417 PRRT2Q7Z6L0 340 aaPredicted RBP14.25□□□□□ -0.13
USP4-204ENST00000416417 ITPRIPQ8IWB1 547 aa14.25□□□□□ -0.13
USP4-204ENST00000416417 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.25□□□□□ -0.13
USP4-204ENST00000416417 TLR7Q9NYK1 1049 aaKnown RBP14.25□□□□□ -0.13
USP4-204ENST00000416417 SRRDQ9UH36 339 aa14.25□□□□□ -0.13
USP4-204ENST00000416417 GABRQQ9UN88 632 aa14.25□□□□□ -0.13
USP4-204ENST00000416417 MYPNQ86TC9 1320 aa14.24□□□□□ -0.13
USP4-204ENST00000416417 CTNND1O60716 968 aaKnown RBP14.24□□□□□ -0.13
USP4-204ENST00000416417 SURF6O75683 361 aaKnown RBP14.24□□□□□ -0.13
USP4-204ENST00000416417 LDHCP07864 332 aa14.24□□□□□ -0.13
USP4-204ENST00000416417 BCRP11274 1271 aa14.24□□□□□ -0.13
USP4-204ENST00000416417 GSTO1P78417 241 aa14.24□□□□□ -0.13
USP4-204ENST00000416417 ATP8B2P98198 1209 aa14.24□□□□□ -0.13
USP4-204ENST00000416417 PRKCZQ05513 592 aa14.24□□□□□ -0.13
USP4-204ENST00000416417 TNNI3KQ59H18 835 aa14.24□□□□□ -0.13
USP4-204ENST00000416417 TEX11Q8IYF3 940 aa14.24□□□□□ -0.13
USP4-204ENST00000416417 PARK7Q99497 189 aaKnown RBP14.24□□□□□ -0.13
USP4-204ENST00000416417 OSBPL5Q9H0X9 879 aaPredicted RBP14.24□□□□□ -0.13
USP4-204ENST00000416417 FPGT-TNNI3KV9GXZ4 949 aa14.24□□□□□ -0.13
USP4-204ENST00000416417 RBBP6Q7Z6E9 1792 aaKnown RBP14.23□□□□□ -0.13
USP4-204ENST00000416417 UQCRFS1P1P0C7P4 283 aa14.23□□□□□ -0.13
USP4-204ENST00000416417 TREML2Q5T2D2 321 aa14.23□□□□□ -0.13
USP4-204ENST00000416417 ADGRA1Q86SQ6 560 aa14.23□□□□□ -0.13
USP4-204ENST00000416417 FTSJ3Q8IY81 847 aaKnown RBP14.23□□□□□ -0.13
USP4-204ENST00000416417 RAET1EQ8TD07 263 aa14.23□□□□□ -0.13
USP4-204ENST00000416417 SSH3Q8TE77 659 aa14.23□□□□□ -0.13
USP4-204ENST00000416417 CCDC8Q9H0W5 538 aaPredicted RBP14.23□□□□□ -0.13
USP4-204ENST00000416417 AATFQ9NY61 560 aaKnown RBP eCLIP14.23□□□□□ -0.13
USP4-204ENST00000416417 CYP2E1P05181 493 aaPredicted RBP14.22□□□□□ -0.13
USP4-204ENST00000416417 ZAP70P43403 619 aa14.22□□□□□ -0.13
USP4-204ENST00000416417 SHROOM1Q2M3G4 852 aaPredicted RBP14.22□□□□□ -0.13
USP4-204ENST00000416417 NAA16Q6N069 864 aaPredicted RBP14.22□□□□□ -0.13
USP4-204ENST00000416417 FASTKD5Q7L8L6 764 aaKnown RBP14.22□□□□□ -0.13
USP4-204ENST00000416417 PIH1D3Q9NQM4 214 aaKnown RBP14.22□□□□□ -0.13
USP4-204ENST00000416417 NDUFB9Q9Y6M9 179 aa14.22□□□□□ -0.13
USP4-204ENST00000416417 DOCK1Q14185 1865 aa14.22□□□□□ -0.13
USP4-204ENST00000416417 GNRH1P01148 92 aa14.21□□□□□ -0.13
USP4-204ENST00000416417 GRK4P32298 578 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms