RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 GDPD2Q9HCC8 539 aa17.44■□□□□ 0.38
USP4-203ENST00000415188 ASTN2O75129 1339 aaPredicted RBP17.43■□□□□ 0.38
USP4-203ENST00000415188 ADM5C9JUS6 153 aa17.43■□□□□ 0.38
USP4-203ENST00000415188 CYP21A2P08686 494 aa17.43■□□□□ 0.38
USP4-203ENST00000415188 IFIT5Q13325 482 aaKnown RBP17.43■□□□□ 0.38
USP4-203ENST00000415188 KRT26Q7Z3Y9 468 aa17.43■□□□□ 0.38
USP4-203ENST00000415188 TXNRD3Q86VQ6 643 aa17.43■□□□□ 0.38
USP4-203ENST00000415188 ZSCAN30Q86W11 494 aa17.43■□□□□ 0.38
USP4-203ENST00000415188 USP17L3A6NCW0 530 aa17.42■□□□□ 0.38
USP4-203ENST00000415188 USP17L4A6NCW7 530 aa17.42■□□□□ 0.38
USP4-203ENST00000415188 AOC2O75106 756 aa17.42■□□□□ 0.38
USP4-203ENST00000415188 KLRK1P26718 216 aa17.42■□□□□ 0.38
USP4-203ENST00000415188 ECE1P42892 770 aa17.42■□□□□ 0.38
USP4-203ENST00000415188 CTCFP49711 727 aaPredicted RBP17.42■□□□□ 0.38
USP4-203ENST00000415188 TIMM10P62072 90 aa17.42■□□□□ 0.38
USP4-203ENST00000415188 CCDC129Q6ZRS4 1044 aa17.42■□□□□ 0.38
USP4-203ENST00000415188 USP17L1Q7RTZ2 530 aa17.42■□□□□ 0.38
USP4-203ENST00000415188 PODNQ7Z5L7 613 aa17.42■□□□□ 0.38
USP4-203ENST00000415188 AGBL3Q8NEM8 1001 aa17.42■□□□□ 0.38
USP4-203ENST00000415188 ZNF594Q96JF6 807 aaPredicted RBP17.42■□□□□ 0.38
USP4-203ENST00000415188 GMLQ99445 158 aa17.42■□□□□ 0.38
USP4-203ENST00000415188 MXD3Q9BW11 206 aa17.42■□□□□ 0.38
USP4-203ENST00000415188 KIF3AQ9Y496 699 aa17.42■□□□□ 0.38
USP4-203ENST00000415188 TAF6LQ9Y6J9 622 aa17.42■□□□□ 0.38
USP4-203ENST00000415188 FIBPO43427 364 aa17.41■□□□□ 0.38
USP4-203ENST00000415188 CAPN15O75808 1086 aa17.41■□□□□ 0.38
USP4-203ENST00000415188 ZNF280AP59817 542 aaPredicted RBP17.41■□□□□ 0.38
USP4-203ENST00000415188 FOXD4L6Q3SYB3 417 aaPredicted RBP17.41■□□□□ 0.38
USP4-203ENST00000415188 TAF7LQ5H9L4 462 aa17.41■□□□□ 0.38
USP4-203ENST00000415188 TTC39AQ5SRH9 613 aa17.41■□□□□ 0.38
USP4-203ENST00000415188 FOXD4L3Q6VB84 417 aaPredicted RBP17.41■□□□□ 0.38
USP4-203ENST00000415188 DHX32Q7L7V1 743 aaKnown RBP17.41■□□□□ 0.38
USP4-203ENST00000415188 DCPSQ96C86 337 aaKnown RBP17.41■□□□□ 0.38
USP4-203ENST00000415188 SEC62Q99442 399 aaKnown RBP17.41■□□□□ 0.38
USP4-203ENST00000415188 MPHOSPH8Q99549 860 aa17.41■□□□□ 0.38
USP4-203ENST00000415188 SCAND2PQ9GZW5 306 aaPredicted RBP17.41■□□□□ 0.38
USP4-203ENST00000415188 GGA3Q9NZ52 723 aa17.41■□□□□ 0.38
USP4-203ENST00000415188 CTNNA3Q9UI47 895 aa17.41■□□□□ 0.38
USP4-203ENST00000415188 PSME4Q14997 1843 aa17.4■□□□□ 0.38
USP4-203ENST00000415188 THSD7BQ9C0I4 1608 aa17.4■□□□□ 0.38
USP4-203ENST00000415188 ZNF804BA4D1E1 1349 aa17.4■□□□□ 0.38
USP4-203ENST00000415188 MAST3O60307 1309 aa17.4■□□□□ 0.38
USP4-203ENST00000415188 ANKRD18BA2A2Z9 1011 aa17.4■□□□□ 0.38
USP4-203ENST00000415188 PFKFB2O60825 505 aa17.4■□□□□ 0.38
USP4-203ENST00000415188 LBX1P52954 281 aa17.4■□□□□ 0.38
USP4-203ENST00000415188 MAP2K1Q02750 393 aaPredicted RBP17.4■□□□□ 0.38
USP4-203ENST00000415188 DNM1Q05193 864 aaKnown RBP17.4■□□□□ 0.38
USP4-203ENST00000415188 GORABQ5T7V8 394 aa17.4■□□□□ 0.38
USP4-203ENST00000415188 Q6ZUG5 572 aa17.4■□□□□ 0.38
USP4-203ENST00000415188 FBXL16Q8N461 479 aa17.4■□□□□ 0.38
USP4-203ENST00000415188 ZNF512BQ96KM6 892 aaPredicted RBP17.4■□□□□ 0.38
USP4-203ENST00000415188 AGXT2Q9BYV1 514 aa17.4■□□□□ 0.38
USP4-203ENST00000415188 LEMD3Q9Y2U8 911 aa17.4■□□□□ 0.38
USP4-203ENST00000415188 NDUFB9Q9Y6M9 179 aa17.4■□□□□ 0.38
USP4-203ENST00000415188 MYH15Q9Y2K3 1946 aa17.39■□□□□ 0.37
USP4-203ENST00000415188 SNAP23O00161 211 aa17.39■□□□□ 0.37
USP4-203ENST00000415188 USP17L8P0C7I0 530 aa17.39■□□□□ 0.37
USP4-203ENST00000415188 HSPA8P11142 646 aaKnown RBP17.39■□□□□ 0.37
USP4-203ENST00000415188 MCM5P33992 734 aa17.39■□□□□ 0.37
USP4-203ENST00000415188 HMGN5P82970 282 aaKnown RBP17.39■□□□□ 0.37
USP4-203ENST00000415188 CHRNDQ07001 517 aa17.39■□□□□ 0.37
USP4-203ENST00000415188 FBXW7Q969H0 707 aa17.39■□□□□ 0.37
USP4-203ENST00000415188 XAGE2Q96GT9 111 aa17.39■□□□□ 0.37
USP4-203ENST00000415188 PUS3Q9BZE2 481 aaKnown RBP17.39■□□□□ 0.37
USP4-203ENST00000415188 ANKRD2Q9GZV1 360 aa17.39■□□□□ 0.37
USP4-203ENST00000415188 ARAP2Q8WZ64 1704 aa17.39■□□□□ 0.37
USP4-203ENST00000415188 POLR2AP24928 1970 aaKnown RBP17.39■□□□□ 0.37
USP4-203ENST00000415188 HSPD1P10809 573 aaKnown RBP17.38■□□□□ 0.37
USP4-203ENST00000415188 SCARF1Q14162 830 aa17.38■□□□□ 0.37
USP4-203ENST00000415188 DACT2Q5SW24 774 aa17.38■□□□□ 0.37
USP4-203ENST00000415188 HELBQ8NG08 1087 aaPredicted RBP17.38■□□□□ 0.37
USP4-203ENST00000415188 SMARCC2Q8TAQ2 1214 aa17.38■□□□□ 0.37
USP4-203ENST00000415188 TCEANC2Q96MN5 208 aa17.38■□□□□ 0.37
USP4-203ENST00000415188 COA1Q9GZY4 146 aa17.38■□□□□ 0.37
USP4-203ENST00000415188 PRDM10Q9NQV6 1147 aa17.38■□□□□ 0.37
USP4-203ENST00000415188 EXOSC10Q01780 885 aaKnown RBP17.37■□□□□ 0.37
USP4-203ENST00000415188 ANGEL2Q5VTE6 544 aaKnown RBP17.37■□□□□ 0.37
USP4-203ENST00000415188 HHIPL1Q96JK4 782 aa17.37■□□□□ 0.37
USP4-203ENST00000415188 ZSCAN16Q9H4T2 348 aaPredicted RBP17.37■□□□□ 0.37
USP4-203ENST00000415188 MYOZ2Q9NPC6 264 aa17.37■□□□□ 0.37
USP4-203ENST00000415188 CCDC39Q9UFE4 941 aa17.37■□□□□ 0.37
USP4-203ENST00000415188 HUNKP57058 714 aa17.37■□□□□ 0.37
USP4-203ENST00000415188 FGD1P98174 961 aa17.37■□□□□ 0.37
USP4-203ENST00000415188 ZSCAN25Q6NSZ9 544 aa17.37■□□□□ 0.37
USP4-203ENST00000415188 STOX1Q6ZVD7 989 aa17.37■□□□□ 0.37
USP4-203ENST00000415188 SULF1Q8IWU6 871 aa17.37■□□□□ 0.37
USP4-203ENST00000415188 GBA2Q9HCG7 927 aaPredicted RBP17.37■□□□□ 0.37
USP4-203ENST00000415188 SCAF8Q9UPN6 1271 aaKnown RBP17.37■□□□□ 0.37
USP4-203ENST00000415188 RIPOR2Q9Y4F9 1068 aa17.37■□□□□ 0.37
USP4-203ENST00000415188 AKAP11Q9UKA4 1901 aa17.36■□□□□ 0.37
USP4-203ENST00000415188 MSNP26038 577 aaKnown RBP17.36■□□□□ 0.37
USP4-203ENST00000415188 MAP2K2P36507 400 aa17.36■□□□□ 0.37
USP4-203ENST00000415188 COL9A3Q14050 684 aaPredicted RBP17.36■□□□□ 0.37
USP4-203ENST00000415188 ATP2B3Q16720 1220 aa17.36■□□□□ 0.37
USP4-203ENST00000415188 NAA16Q6N069 864 aaPredicted RBP17.36■□□□□ 0.37
USP4-203ENST00000415188 APPBP2Q92624 585 aa17.36■□□□□ 0.37
USP4-203ENST00000415188 ZNF274Q96GC6 653 aaPredicted RBP17.36■□□□□ 0.37
USP4-203ENST00000415188 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.36■□□□□ 0.37
USP4-203ENST00000415188 NOL7Q9UMY1 257 aaKnown RBP17.36■□□□□ 0.37
USP4-203ENST00000415188 ZNF646O15015 1829 aaPredicted RBP17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms