RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 GOLGB1Q14789 3259 aaKnown RBP16.59■□□□□ 0.25
GPNMB-203ENST00000409458 USP17L12C9JPN9 530 aa16.59■□□□□ 0.25
GPNMB-203ENST00000409458 USP17L21D6R901 530 aa16.59■□□□□ 0.25
GPNMB-203ENST00000409458 CYP2D6P10635 497 aa16.59■□□□□ 0.25
GPNMB-203ENST00000409458 USP5P45974 858 aa16.59■□□□□ 0.25
GPNMB-203ENST00000409458 DACT2Q5SW24 774 aa16.59■□□□□ 0.25
GPNMB-203ENST00000409458 STRIP1Q5VSL9 837 aa16.59■□□□□ 0.25
GPNMB-203ENST00000409458 ANP32EQ9BTT0 268 aa16.59■□□□□ 0.25
GPNMB-203ENST00000409458 KRT23Q9C075 422 aa16.59■□□□□ 0.25
GPNMB-203ENST00000409458 RNF41Q9H4P4 317 aaPredicted RBP16.59■□□□□ 0.25
GPNMB-203ENST00000409458 ARPP21Q9UBL0 812 aaPredicted RBP16.59■□□□□ 0.25
GPNMB-203ENST00000409458 TTF2Q9UNY4 1162 aaKnown RBP16.59■□□□□ 0.25
GPNMB-203ENST00000409458 SMC3Q9UQE7 1217 aa16.59■□□□□ 0.25
GPNMB-203ENST00000409458 SH2B2O14492 632 aaPredicted RBP16.58■□□□□ 0.24
GPNMB-203ENST00000409458 PFKFB2O60825 505 aa16.58■□□□□ 0.24
GPNMB-203ENST00000409458 KDM4AO75164 1064 aa16.58■□□□□ 0.24
GPNMB-203ENST00000409458 RHBDL3P58872 404 aa16.58■□□□□ 0.24
GPNMB-203ENST00000409458 FKBP1AP62942 108 aaKnown RBP16.58■□□□□ 0.24
GPNMB-203ENST00000409458 SCRN1Q12765 414 aa16.58■□□□□ 0.24
GPNMB-203ENST00000409458 RRP12Q5JTH9 1297 aaKnown RBP16.58■□□□□ 0.24
GPNMB-203ENST00000409458 CERS3Q8IU89 383 aa16.58■□□□□ 0.24
GPNMB-203ENST00000409458 KLHL34Q8N239 644 aa16.58■□□□□ 0.24
GPNMB-203ENST00000409458 ZDHHC9Q9Y397 364 aa16.58■□□□□ 0.24
GPNMB-203ENST00000409458 FER1L6Q2WGJ9 1857 aa16.57■□□□□ 0.24
GPNMB-203ENST00000409458 USP17L3A6NCW0 530 aa16.57■□□□□ 0.24
GPNMB-203ENST00000409458 USP17L4A6NCW7 530 aa16.57■□□□□ 0.24
GPNMB-203ENST00000409458 YDJCA8MPS7 323 aa16.57■□□□□ 0.24
GPNMB-203ENST00000409458 USP17L8P0C7I0 530 aa16.57■□□□□ 0.24
GPNMB-203ENST00000409458 GJB2P29033 226 aa16.57■□□□□ 0.24
GPNMB-203ENST00000409458 EVCP57679 992 aa16.57■□□□□ 0.24
GPNMB-203ENST00000409458 SBK1Q52WX2 424 aa16.57■□□□□ 0.24
GPNMB-203ENST00000409458 USP17L1Q7RTZ2 530 aa16.57■□□□□ 0.24
GPNMB-203ENST00000409458 TGFBRAP1Q8WUH2 860 aa16.57■□□□□ 0.24
GPNMB-203ENST00000409458 ZNF277Q9NRM2 450 aaPredicted RBP16.57■□□□□ 0.24
GPNMB-203ENST00000409458 TOMM22Q9NS69 142 aa16.57■□□□□ 0.24
GPNMB-203ENST00000409458 MCM9Q9NXL9 1143 aa16.57■□□□□ 0.24
GPNMB-203ENST00000409458 PDIA3P30101 505 aaKnown RBP16.56■□□□□ 0.24
GPNMB-203ENST00000409458 SCNN1DP51172 638 aa16.56■□□□□ 0.24
GPNMB-203ENST00000409458 DALRD3Q5D0E6 543 aaKnown RBP16.56■□□□□ 0.24
GPNMB-203ENST00000409458 SOGA3Q5TF21 947 aa16.56■□□□□ 0.24
GPNMB-203ENST00000409458 TEX11Q8IYF3 940 aa16.56■□□□□ 0.24
GPNMB-203ENST00000409458 ZSWIM5Q9P217 1185 aa16.56■□□□□ 0.24
GPNMB-203ENST00000409458 BRPF3Q9ULD4 1205 aa16.56■□□□□ 0.24
GPNMB-203ENST00000409458 CD2APQ9Y5K6 639 aa16.56■□□□□ 0.24
GPNMB-203ENST00000409458 ECM29Q5VYK3 1845 aa16.56■□□□□ 0.24
GPNMB-203ENST00000409458 KLF18A0A0U1RQI7 1052 aa16.56■□□□□ 0.24
GPNMB-203ENST00000409458 PLCG2P16885 1265 aa16.56■□□□□ 0.24
GPNMB-203ENST00000409458 SLC4A8Q2Y0W8 1093 aa16.56■□□□□ 0.24
GPNMB-203ENST00000409458 MAPKAPK5Q8IW41 473 aa16.56■□□□□ 0.24
GPNMB-203ENST00000409458 ZNF274Q96GC6 653 aaPredicted RBP16.56■□□□□ 0.24
GPNMB-203ENST00000409458 TMEM87BQ96K49 555 aa16.56■□□□□ 0.24
GPNMB-203ENST00000409458 SENP2Q9HC62 589 aa16.56■□□□□ 0.24
GPNMB-203ENST00000409458 NAP1L2Q9ULW6 460 aaPredicted RBP16.56■□□□□ 0.24
GPNMB-203ENST00000409458 ANGEL1Q9UNK9 670 aaKnown RBP16.56■□□□□ 0.24
GPNMB-203ENST00000409458 FLT1P17948 1338 aa16.55■□□□□ 0.24
GPNMB-203ENST00000409458 MYH1P12882 1939 aa16.55■□□□□ 0.24
GPNMB-203ENST00000409458 BRD1O95696 1058 aa16.55■□□□□ 0.24
GPNMB-203ENST00000409458 FGRP09769 529 aa16.55■□□□□ 0.24
GPNMB-203ENST00000409458 IGDCC4Q8TDY8 1250 aa16.55■□□□□ 0.24
GPNMB-203ENST00000409458 LY9Q9HBG7 655 aa16.55■□□□□ 0.24
GPNMB-203ENST00000409458 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.55■□□□□ 0.24
GPNMB-203ENST00000409458 ROBO3Q96MS0 1386 aa16.54■□□□□ 0.24
GPNMB-203ENST00000409458 GOLGA8BA8MQT2 603 aa16.54■□□□□ 0.24
GPNMB-203ENST00000409458 JAK2O60674 1132 aa16.54■□□□□ 0.24
GPNMB-203ENST00000409458 PRDM1O75626 825 aa16.54■□□□□ 0.24
GPNMB-203ENST00000409458 CCT2P78371 535 aaKnown RBP16.54■□□□□ 0.24
GPNMB-203ENST00000409458 TMEM67Q5HYA8 995 aa16.54■□□□□ 0.24
GPNMB-203ENST00000409458 KIAA0825Q8IV33 1275 aa16.54■□□□□ 0.24
GPNMB-203ENST00000409458 LARGE2Q8N3Y3 721 aa16.54■□□□□ 0.24
GPNMB-203ENST00000409458 TEKT1Q969V4 418 aa16.54■□□□□ 0.24
GPNMB-203ENST00000409458 NCOA5Q9HCD5 579 aaKnown RBP16.54■□□□□ 0.24
GPNMB-203ENST00000409458 PCP11498 1178 aaKnown RBP16.53■□□□□ 0.24
GPNMB-203ENST00000409458 CRKP46108 304 aa16.53■□□□□ 0.24
GPNMB-203ENST00000409458 C12orf60Q5U649 245 aa16.53■□□□□ 0.24
GPNMB-203ENST00000409458 FOXD4L5Q5VV16 416 aaPredicted RBP16.53■□□□□ 0.24
GPNMB-203ENST00000409458 HHIPL2Q6UWX4 724 aa16.53■□□□□ 0.24
GPNMB-203ENST00000409458 RAB11FIP4Q86YS3 637 aa16.53■□□□□ 0.24
GPNMB-203ENST00000409458 FOXD4L4Q8WXT5 416 aaPredicted RBP16.53■□□□□ 0.24
GPNMB-203ENST00000409458 ESR2Q92731 530 aa16.53■□□□□ 0.24
GPNMB-203ENST00000409458 ZKSCAN3Q9BRR0 538 aa16.53■□□□□ 0.24
GPNMB-203ENST00000409458 SAP30BPQ9UHR5 308 aaKnown RBP16.53■□□□□ 0.24
GPNMB-203ENST00000409458 HPS5Q9UPZ3 1129 aa16.53■□□□□ 0.24
GPNMB-203ENST00000409458 IFIT3O14879 490 aaKnown RBP16.53■□□□□ 0.24
GPNMB-203ENST00000409458 CTDNEP1O95476 244 aa16.53■□□□□ 0.24
GPNMB-203ENST00000409458 SGMS1Q86VZ5 419 aa16.53■□□□□ 0.24
GPNMB-203ENST00000409458 ORC4O43929 436 aa16.52■□□□□ 0.23
GPNMB-203ENST00000409458 SLC3A2P08195 630 aaKnown RBP16.52■□□□□ 0.23
GPNMB-203ENST00000409458 SYT1P21579 422 aa16.52■□□□□ 0.23
GPNMB-203ENST00000409458 MCM4P33991 863 aa16.52■□□□□ 0.23
GPNMB-203ENST00000409458 IARSP41252 1262 aaKnown RBP16.52■□□□□ 0.23
GPNMB-203ENST00000409458 APOBEC3HQ6NTF7 200 aaKnown RBP16.52■□□□□ 0.23
GPNMB-203ENST00000409458 NSUN7Q8NE18 718 aaKnown RBP16.52■□□□□ 0.23
GPNMB-203ENST00000409458 SMARCC2Q8TAQ2 1214 aa16.52■□□□□ 0.23
GPNMB-203ENST00000409458 VPS33BQ9H267 617 aa16.52■□□□□ 0.23
GPNMB-203ENST00000409458 PCDHAC2Q9Y5I4 1007 aa16.52■□□□□ 0.23
GPNMB-203ENST00000409458 ARFGEF1Q9Y6D6 1849 aa16.52■□□□□ 0.23
GPNMB-203ENST00000409458 STX6O43752 255 aa16.51■□□□□ 0.23
GPNMB-203ENST00000409458 LIFRP42702 1097 aa16.51■□□□□ 0.23
GPNMB-203ENST00000409458 PLCD1P51178 756 aa16.51■□□□□ 0.23
GPNMB-203ENST00000409458 CDC42EP5Q6NZY7 148 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms