RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 BBXQ8WY36 941 aaPredicted RBP12.77□□□□□ -0.37
TTC28-201ENST00000397906 FAM227BQ96M60 508 aa12.77□□□□□ -0.37
TTC28-201ENST00000397906 CHMLP26374 656 aa12.77□□□□□ -0.37
TTC28-201ENST00000397906 ZAP70P43403 619 aa12.77□□□□□ -0.37
TTC28-201ENST00000397906 TRAF5O00463 557 aa12.77□□□□□ -0.37
TTC28-201ENST00000397906 ATP2C2O75185 946 aa12.77□□□□□ -0.37
TTC28-201ENST00000397906 EPB41P11171 864 aaKnown RBP12.76□□□□□ -0.37
TTC28-201ENST00000397906 A0A1B0GVL5 298 aa12.76□□□□□ -0.37
TTC28-201ENST00000397906 CTSWP56202 376 aa12.76□□□□□ -0.37
TTC28-201ENST00000397906 CCDC155Q8N6L0 562 aa12.76□□□□□ -0.37
TTC28-201ENST00000397906 PPP1R9BQ96SB3 815 aa12.76□□□□□ -0.37
TTC28-201ENST00000397906 FRMPD2Q68DX3 1309 aaPredicted RBP12.76□□□□□ -0.37
TTC28-201ENST00000397906 LPXNO60711 386 aa12.76□□□□□ -0.37
TTC28-201ENST00000397906 KIF22Q14807 665 aa12.76□□□□□ -0.37
TTC28-201ENST00000397906 GOLGA1Q92805 767 aa12.76□□□□□ -0.37
TTC28-201ENST00000397906 ZNF496Q96IT1 587 aaPredicted RBP12.76□□□□□ -0.37
TTC28-201ENST00000397906 GOLGA6L9A6NEM1 432 aa12.76□□□□□ -0.37
TTC28-201ENST00000397906 PLEKHM2Q8IWE5 1019 aa12.76□□□□□ -0.37
TTC28-201ENST00000397906 TESPA1A2RU30 521 aaPredicted RBP12.76□□□□□ -0.37
TTC28-201ENST00000397906 MXRA7P84157 204 aa12.76□□□□□ -0.37
TTC28-201ENST00000397906 CCDC25Q86WR0 208 aa12.76□□□□□ -0.37
TTC28-201ENST00000397906 TEKT1Q969V4 418 aa12.76□□□□□ -0.37
TTC28-201ENST00000397906 MROH5Q6ZUA9 1318 aa12.76□□□□□ -0.37
TTC28-201ENST00000397906 PRDM10Q9NQV6 1147 aa12.76□□□□□ -0.37
TTC28-201ENST00000397906 PPM1EQ8WY54 764 aa12.76□□□□□ -0.37
TTC28-201ENST00000397906 HAUS7Q99871 368 aa12.76□□□□□ -0.37
TTC28-201ENST00000397906 DAPK3O43293 454 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 PHKBQ93100 1093 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 POLR3AO14802 1390 aaPredicted RBP12.75□□□□□ -0.37
TTC28-201ENST00000397906 STX10O60499 249 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 ODF2LQ9ULJ1 636 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 DCTPP1Q9H773 170 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 TXNDC16Q9P2K2 825 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 PDE4DQ08499 809 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 SH3BP5O60239 455 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 DEXIO95424 95 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 KARSQ15046 597 aaKnown RBP12.75□□□□□ -0.37
TTC28-201ENST00000397906 PPP1R7Q15435 360 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 SULF1Q8IWU6 871 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 PRPHP41219 470 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 PSMC4P43686 418 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 GABPAQ06546 454 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 CCDC42Q96M95 316 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 RXRBP28702 533 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 ADCY7P51828 1080 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 MKRN3Q13064 507 aaKnown RBP12.75□□□□□ -0.37
TTC28-201ENST00000397906 IQUBQ8NA54 791 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 OTUD7AQ8TE49 926 aaPredicted RBP12.75□□□□□ -0.37
TTC28-201ENST00000397906 SNX16P57768 344 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 PPP1R21Q6ZMI0 780 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 BRAPQ7Z569 592 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 NCAPG2Q86XI2 1143 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 GLG1Q92896 1179 aa12.75□□□□□ -0.37
TTC28-201ENST00000397906 GYG1P46976 350 aa12.74□□□□□ -0.37
TTC28-201ENST00000397906 ARHGEF16Q5VV41 709 aa12.74□□□□□ -0.37
TTC28-201ENST00000397906 SKILP12757 684 aa12.74□□□□□ -0.37
TTC28-201ENST00000397906 SPAG1Q07617 926 aa12.74□□□□□ -0.37
TTC28-201ENST00000397906 LZTFL1Q9NQ48 299 aa12.74□□□□□ -0.37
TTC28-201ENST00000397906 GCKRQ14397 625 aa12.74□□□□□ -0.37
TTC28-201ENST00000397906 IL13P35225 146 aa12.74□□□□□ -0.37
TTC28-201ENST00000397906 DYMQ7RTS9 669 aa12.74□□□□□ -0.37
TTC28-201ENST00000397906 ZFYVE16Q7Z3T8 1539 aa12.74□□□□□ -0.37
TTC28-201ENST00000397906 SLC27A2O14975 620 aa12.74□□□□□ -0.37
TTC28-201ENST00000397906 RPL13P26373 211 aaKnown RBP12.74□□□□□ -0.37
TTC28-201ENST00000397906 TICAM2Q86XR7 235 aa12.74□□□□□ -0.37
TTC28-201ENST00000397906 MYCT1Q8N699 235 aa12.74□□□□□ -0.37
TTC28-201ENST00000397906 TRPC6Q9Y210 931 aa12.74□□□□□ -0.37
TTC28-201ENST00000397906 POTEB2H3BUK9 544 aa12.74□□□□□ -0.37
TTC28-201ENST00000397906 DNM2P50570 870 aa12.74□□□□□ -0.37
TTC28-201ENST00000397906 TACC1O75410 805 aa12.74□□□□□ -0.37
TTC28-201ENST00000397906 HAUS3Q68CZ6 603 aa12.74□□□□□ -0.37
TTC28-201ENST00000397906 CGNQ9P2M7 1197 aaKnown RBP12.74□□□□□ -0.37
TTC28-201ENST00000397906 FAM169AQ9Y6X4 670 aa12.74□□□□□ -0.37
TTC28-201ENST00000397906 TTLL3Q9Y4R7 772 aa12.74□□□□□ -0.37
TTC28-201ENST00000397906 KIF5AQ12840 1032 aa12.73□□□□□ -0.37
TTC28-201ENST00000397906 UAP1Q16222 522 aaPredicted RBP12.73□□□□□ -0.37
TTC28-201ENST00000397906 PPP2R5DQ14738 602 aa12.73□□□□□ -0.37
TTC28-201ENST00000397906 NAP1L4Q99733 375 aaKnown RBP12.73□□□□□ -0.37
TTC28-201ENST00000397906 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.73□□□□□ -0.375e-6■■■■■ 31.8
TTC28-201ENST00000397906 DNAI1Q9UI46 699 aa12.73□□□□□ -0.37
TTC28-201ENST00000397906 CTAGE9A4FU28 777 aa12.73□□□□□ -0.37
TTC28-201ENST00000397906 NOC4LQ9BVI4 516 aaKnown RBP12.73□□□□□ -0.37
TTC28-201ENST00000397906 GCNT3O95395 438 aa12.73□□□□□ -0.37
TTC28-201ENST00000397906 LEO1Q8WVC0 666 aaPredicted RBP12.73□□□□□ -0.37
TTC28-201ENST00000397906 KIFAP3Q92845 792 aa12.73□□□□□ -0.37
TTC28-201ENST00000397906 MRRFQ96E11 262 aaKnown RBP12.73□□□□□ -0.37
TTC28-201ENST00000397906 LMBR1Q8WVP7 490 aa12.73□□□□□ -0.37
TTC28-201ENST00000397906 DDX23Q9BUQ8 820 aaKnown RBP12.73□□□□□ -0.37
TTC28-201ENST00000397906 SRRTQ9BXP5 876 aaKnown RBP12.73□□□□□ -0.37
TTC28-201ENST00000397906 RPS6KB1P23443 525 aa12.73□□□□□ -0.37
TTC28-201ENST00000397906 IFT81Q8WYA0 676 aa12.73□□□□□ -0.37
TTC28-201ENST00000397906 ATF5Q9Y2D1 282 aaPredicted RBP12.73□□□□□ -0.37
TTC28-201ENST00000397906 ATP2A1O14983 1001 aa12.73□□□□□ -0.37
TTC28-201ENST00000397906 CLRN2A0PK11 232 aa12.73□□□□□ -0.37
TTC28-201ENST00000397906 BIRC2Q13490 618 aa12.73□□□□□ -0.37
TTC28-201ENST00000397906 USPL1Q5W0Q7 1092 aa12.73□□□□□ -0.37
TTC28-201ENST00000397906 CMTR1Q8N1G2 835 aaKnown RBP12.73□□□□□ -0.37
TTC28-201ENST00000397906 APPBP2Q92624 585 aa12.73□□□□□ -0.37
TTC28-201ENST00000397906 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.72□□□□□ -0.37
TTC28-201ENST00000397906 PPANQ9NQ55 473 aaKnown RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms