RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 RAI14Q9P0K7 980 aa16.26■□□□□ 0.19
SNCA-204ENST00000394989 IFIT3O14879 490 aaKnown RBP16.25■□□□□ 0.19
SNCA-204ENST00000394989 TM4SF1P30408 202 aa16.25■□□□□ 0.19
SNCA-204ENST00000394989 NLRP3Q96P20 1036 aa16.25■□□□□ 0.19
SNCA-204ENST00000394989 KRT23Q9C075 422 aa16.25■□□□□ 0.19
SNCA-204ENST00000394989 RTCBQ9Y3I0 505 aaKnown RBP16.25■□□□□ 0.19
SNCA-204ENST00000394989 ZNF500O60304 480 aaPredicted RBP16.25■□□□□ 0.19
SNCA-204ENST00000394989 NFXL1Q6ZNB6 911 aa16.25■□□□□ 0.19
SNCA-204ENST00000394989 FBXO33Q7Z6M2 555 aa16.25■□□□□ 0.19
SNCA-204ENST00000394989 ZNF830Q96NB3 372 aaPredicted RBP16.25■□□□□ 0.19
SNCA-204ENST00000394989 PPARAQ07869 468 aa16.24■□□□□ 0.19
SNCA-204ENST00000394989 RRP12Q5JTH9 1297 aaKnown RBP16.24■□□□□ 0.19
SNCA-204ENST00000394989 BRAPQ7Z569 592 aa16.24■□□□□ 0.19
SNCA-204ENST00000394989 SLC51AQ86UW1 340 aa16.24■□□□□ 0.19
SNCA-204ENST00000394989 ALG1Q9BT22 464 aa16.24■□□□□ 0.19
SNCA-204ENST00000394989 POLR3EQ9NVU0 708 aa16.24■□□□□ 0.19
SNCA-204ENST00000394989 MAGEB6P1A0A0J9YX57 407 aa16.24■□□□□ 0.19
SNCA-204ENST00000394989 GOLGA8AA7E2F4 631 aa16.24■□□□□ 0.19
SNCA-204ENST00000394989 VPS37DQ86XT2 251 aa16.24■□□□□ 0.19
SNCA-204ENST00000394989 CBX8Q9HC52 389 aa16.24■□□□□ 0.19
SNCA-204ENST00000394989 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.24■□□□□ 0.19
SNCA-204ENST00000394989 SPATA31A6Q5VVP1 1343 aa16.24■□□□□ 0.19
SNCA-204ENST00000394989 DYNLL1P63167 89 aaKnown RBP16.24■□□□□ 0.19
SNCA-204ENST00000394989 SLC12A7Q9Y666 1083 aa16.24■□□□□ 0.19
SNCA-204ENST00000394989 NID2Q14112 1375 aa16.24■□□□□ 0.19
SNCA-204ENST00000394989 BAZ2AQ9UIF9 1905 aaKnown RBP16.24■□□□□ 0.19
SNCA-204ENST00000394989 MYH13Q9UKX3 1938 aa16.23■□□□□ 0.19
SNCA-204ENST00000394989 CDKL5O76039 1030 aa16.23■□□□□ 0.19
SNCA-204ENST00000394989 FAM160A1Q05DH4 1040 aa16.23■□□□□ 0.19
SNCA-204ENST00000394989 ADALQ6DHV7 355 aa16.23■□□□□ 0.19
SNCA-204ENST00000394989 RGS22Q8NE09 1264 aa16.23■□□□□ 0.19
SNCA-204ENST00000394989 PLCB2Q00722 1185 aa16.23■□□□□ 0.19
SNCA-204ENST00000394989 KRT40Q6A162 431 aa16.23■□□□□ 0.19
SNCA-204ENST00000394989 TPTE2Q6XPS3 522 aa16.23■□□□□ 0.19
SNCA-204ENST00000394989 FSIP1Q8NA03 581 aa16.23■□□□□ 0.19
SNCA-204ENST00000394989 IGSF3O75054 1194 aa16.22■□□□□ 0.19
SNCA-204ENST00000394989 DNAJC25Q9H1X3 360 aa16.22■□□□□ 0.19
SNCA-204ENST00000394989 TOMM22Q9NS69 142 aa16.22■□□□□ 0.19
SNCA-204ENST00000394989 CCDC69A6NI79 296 aa16.22■□□□□ 0.19
SNCA-204ENST00000394989 CBX1P83916 185 aa16.22■□□□□ 0.19
SNCA-204ENST00000394989 SASS6Q6UVJ0 657 aa16.22■□□□□ 0.19
SNCA-204ENST00000394989 TXNRD3Q86VQ6 643 aa16.22■□□□□ 0.19
SNCA-204ENST00000394989 FMR1NBQ8N0W7 255 aaPredicted RBP16.22■□□□□ 0.19
SNCA-204ENST00000394989 GJD4Q96KN9 370 aaPredicted RBP16.22■□□□□ 0.19
SNCA-204ENST00000394989 TFCP2L1Q9NZI6 479 aa16.22■□□□□ 0.19
SNCA-204ENST00000394989 ANAPC4Q9UJX5 808 aa16.22■□□□□ 0.19
SNCA-204ENST00000394989 YEATS4O95619 227 aa16.22■□□□□ 0.19
SNCA-204ENST00000394989 IARSP41252 1262 aaKnown RBP16.22■□□□□ 0.19
SNCA-204ENST00000394989 CCDC73Q6ZRK6 1079 aa16.22■□□□□ 0.19
SNCA-204ENST00000394989 BCL11BQ9C0K0 894 aaPredicted RBP16.22■□□□□ 0.19
SNCA-204ENST00000394989 IRS2Q9Y4H2 1338 aa16.21■□□□□ 0.19
SNCA-204ENST00000394989 A0A1B0GVL5 298 aa16.21■□□□□ 0.19
SNCA-204ENST00000394989 MINDY4BA8MYZ0 360 aa16.21■□□□□ 0.19
SNCA-204ENST00000394989 NSUN4Q96CB9 384 aaKnown RBP16.21■□□□□ 0.19
SNCA-204ENST00000394989 CYP2D7A0A087X1C5 515 aa16.21■□□□□ 0.19
SNCA-204ENST00000394989 GUCY1A2P33402 732 aa16.21■□□□□ 0.19
SNCA-204ENST00000394989 NDUFA8P51970 172 aa16.21■□□□□ 0.19
SNCA-204ENST00000394989 C17orf53Q8N3J3 647 aaPredicted RBP16.21■□□□□ 0.19
SNCA-204ENST00000394989 MRPS27Q92552 414 aaKnown RBP16.21■□□□□ 0.19
SNCA-204ENST00000394989 TAOK2Q9UL54 1235 aa16.21■□□□□ 0.19
SNCA-204ENST00000394989 DUOX1Q9NRD9 1551 aa16.21■□□□□ 0.18
SNCA-204ENST00000394989 A0A1W2PQ27 194 aa16.2■□□□□ 0.18
SNCA-204ENST00000394989 A0A1W2PQ64 194 aa16.2■□□□□ 0.18
SNCA-204ENST00000394989 A0A1W2PQD8 194 aa16.2■□□□□ 0.18
SNCA-204ENST00000394989 SPTLC2O15270 562 aa16.2■□□□□ 0.18
SNCA-204ENST00000394989 WTAPQ15007 396 aa16.2■□□□□ 0.18
SNCA-204ENST00000394989 STK38Q15208 465 aa16.2■□□□□ 0.18
SNCA-204ENST00000394989 CPLX2Q6PUV4 134 aaKnown RBP16.2■□□□□ 0.18
SNCA-204ENST00000394989 KCNG4Q8TDN1 519 aa16.2■□□□□ 0.18
SNCA-204ENST00000394989 LRRC4BQ9NT99 713 aa16.2■□□□□ 0.18
SNCA-204ENST00000394989 FMNL1O95466 1100 aaPredicted RBP16.2■□□□□ 0.18
SNCA-204ENST00000394989 IFNAR1P17181 557 aa16.2■□□□□ 0.18
SNCA-204ENST00000394989 ANO1Q5XXA6 986 aa16.2■□□□□ 0.18
SNCA-204ENST00000394989 SLC26A6Q9BXS9 759 aa16.2■□□□□ 0.18
SNCA-204ENST00000394989 RNF41Q9H4P4 317 aaPredicted RBP16.2■□□□□ 0.18
SNCA-204ENST00000394989 STK36Q9NRP7 1315 aa16.2■□□□□ 0.18
SNCA-204ENST00000394989 A0A087WWV3 80 aa16.2■□□□□ 0.18
SNCA-204ENST00000394989 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.2■□□□□ 0.18
SNCA-204ENST00000394989 SEMA3EO15041 775 aa16.2■□□□□ 0.18
SNCA-204ENST00000394989 ZNF165P49910 485 aa16.2■□□□□ 0.18
SNCA-204ENST00000394989 MECOMQ03112 1051 aa16.2■□□□□ 0.18
SNCA-204ENST00000394989 EVX2Q03828 476 aa16.2■□□□□ 0.18
SNCA-204ENST00000394989 AXDND1Q5T1B0 1012 aaPredicted RBP16.2■□□□□ 0.18
SNCA-204ENST00000394989 NBPF11Q86T75 865 aa16.2■□□□□ 0.18
SNCA-204ENST00000394989 ERCC4Q92889 916 aaPredicted RBP16.2■□□□□ 0.18
SNCA-204ENST00000394989 MYH2Q9UKX2 1941 aa16.19■□□□□ 0.18
SNCA-204ENST00000394989 CTAGE5O15320 804 aa16.19■□□□□ 0.18
SNCA-204ENST00000394989 KINO60870 393 aaKnown RBP16.19■□□□□ 0.18
SNCA-204ENST00000394989 U2AF2P26368 475 aaKnown RBP eCLIP16.19■□□□□ 0.18
SNCA-204ENST00000394989 HIBADHP31937 336 aaKnown RBP16.19■□□□□ 0.18
SNCA-204ENST00000394989 SEC23AQ15436 765 aa16.19■□□□□ 0.18
SNCA-204ENST00000394989 C11orf57Q6ZUT1 292 aaPredicted RBP16.19■□□□□ 0.18
SNCA-204ENST00000394989 CMTR1Q8N1G2 835 aaKnown RBP16.19■□□□□ 0.18
SNCA-204ENST00000394989 TTC12Q9H892 705 aaPredicted RBP16.19■□□□□ 0.18
SNCA-204ENST00000394989 PDS5AQ29RF7 1337 aaKnown RBP16.19■□□□□ 0.18
SNCA-204ENST00000394989 WDHD1O75717 1129 aaPredicted RBP16.19■□□□□ 0.18
SNCA-204ENST00000394989 PRDX5P30044 214 aa16.19■□□□□ 0.18
SNCA-204ENST00000394989 SYNE3Q6ZMZ3 975 aa16.19■□□□□ 0.18
SNCA-204ENST00000394989 TDRD7Q8NHU6 1098 aaKnown RBP16.19■□□□□ 0.18
SNCA-204ENST00000394989 MTA3Q9BTC8 594 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms