RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 METTL23Q86XA0 190 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 ZBTB8OSQ8IWT0 167 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 PHKBQ93100 1093 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 CALML4Q96GE6 196 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 RNPC3Q96LT9 517 aaKnown RBP9.62□□□□□ -0.87
HMGB1-203ENST00000341423 GLIS2Q9BZE0 524 aaPredicted RBP9.62□□□□□ -0.87
HMGB1-203ENST00000341423 CCDC8Q9H0W5 538 aaPredicted RBP9.62□□□□□ -0.87
HMGB1-203ENST00000341423 CNNM2Q9H8M5 875 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 MLH3Q9UHC1 1453 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 CCPG1Q9ULG6 757 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 SMC3Q9UQE7 1217 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 ARPP19P56211 112 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 SAMD7Q7Z3H4 446 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 IL1RAPL2Q9NP60 686 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 STRN3Q13033 797 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 SP8Q8IXZ3 490 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 LPIN2Q92539 896 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 SKA1Q96BD8 255 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 VPS37CA5D8V6 355 aaPredicted RBP9.61□□□□□ -0.87
HMGB1-203ENST00000341423 ADCY3O60266 1144 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 HARSP12081 509 aaKnown RBP9.61□□□□□ -0.87
HMGB1-203ENST00000341423 CASTP20810 708 aaKnown RBP9.61□□□□□ -0.87
HMGB1-203ENST00000341423 SFSWAPQ12872 951 aaKnown RBP9.61□□□□□ -0.87
HMGB1-203ENST00000341423 USP17L2Q6R6M4 530 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 DPH6Q7L8W6 267 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 KATNAL1Q9BW62 490 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 CEP131Q9UPN4 1083 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 ERBB3P21860 1342 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 THNSL1Q8IYQ7 743 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 MSANTD4Q8NCY6 345 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 TGFBRAP1Q8WUH2 860 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 PHAXQ9H814 394 aaKnown RBP9.61□□□□□ -0.87
HMGB1-203ENST00000341423 IRAK4Q9NWZ3 460 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 MYPNQ86TC9 1320 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 TAF5LO75529 589 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 DNTTIP2Q5QJE6 756 aaKnown RBP9.61□□□□□ -0.87
HMGB1-203ENST00000341423 ARMCX5Q6P1M9 558 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 MYOCDQ8IZQ8 938 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 TSC1Q92574 1164 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 ZKSCAN4Q969J2 545 aaPredicted RBP9.61□□□□□ -0.87
HMGB1-203ENST00000341423 SERTAD1Q9UHV2 236 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 SMTNP53814 917 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 DHX8Q14562 1220 aaKnown RBP9.61□□□□□ -0.87
HMGB1-203ENST00000341423 PPP2R5BQ15173 497 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 ANKRD1Q15327 319 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 NCDNQ9UBB6 729 aa9.61□□□□□ -0.87
HMGB1-203ENST00000341423 PDE4AP27815 886 aa9.6□□□□□ -0.87
HMGB1-203ENST00000341423 MAP2K2P36507 400 aa9.6□□□□□ -0.87
HMGB1-203ENST00000341423 HEATR3Q7Z4Q2 680 aa9.6□□□□□ -0.87
HMGB1-203ENST00000341423 MAGEB6Q8N7X4 407 aa9.6□□□□□ -0.87
HMGB1-203ENST00000341423 CDHR1Q96JP9 859 aa9.6□□□□□ -0.87
HMGB1-203ENST00000341423 USP17L10C9JJH3 530 aa9.6□□□□□ -0.87
HMGB1-203ENST00000341423 MTHFSDQ2M296 383 aaKnown RBP9.6□□□□□ -0.87
HMGB1-203ENST00000341423 GNASQ5JWF2 1037 aa9.6□□□□□ -0.87
HMGB1-203ENST00000341423 ALS2CR12Q96Q35 445 aa9.6□□□□□ -0.87
HMGB1-203ENST00000341423 INO80BQ9C086 356 aaPredicted RBP9.6□□□□□ -0.87
HMGB1-203ENST00000341423 LRRC27Q9C0I9 530 aa9.6□□□□□ -0.87
HMGB1-203ENST00000341423 MAP3K20Q9NYL2 800 aaKnown RBP9.6□□□□□ -0.87
HMGB1-203ENST00000341423 TMEM67Q5HYA8 995 aa9.6□□□□□ -0.87
HMGB1-203ENST00000341423 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.6□□□□□ -0.87
HMGB1-203ENST00000341423 CACNA1GO43497 2377 aa9.6□□□□□ -0.87
HMGB1-203ENST00000341423 PPFIA3O75145 1194 aa9.6□□□□□ -0.87
HMGB1-203ENST00000341423 CT47B1P0C2W7 299 aaPredicted RBP9.6□□□□□ -0.87
HMGB1-203ENST00000341423 ATF7P17544 494 aaPredicted RBP9.6□□□□□ -0.87
HMGB1-203ENST00000341423 SPP2Q13103 211 aa9.6□□□□□ -0.87
HMGB1-203ENST00000341423 ERO1BQ86YB8 467 aa9.6□□□□□ -0.87
HMGB1-203ENST00000341423 TSR2Q969E8 191 aaKnown RBP9.6□□□□□ -0.87
HMGB1-203ENST00000341423 GBP3Q9H0R5 595 aa9.6□□□□□ -0.87
HMGB1-203ENST00000341423 LUC7LQ9NQ29 371 aaKnown RBP9.6□□□□□ -0.87
HMGB1-203ENST00000341423 FAM13BQ9NYF5 915 aa9.6□□□□□ -0.87
HMGB1-203ENST00000341423 FAM184BQ9ULE4 1060 aa9.6□□□□□ -0.87
HMGB1-203ENST00000341423 NUP153P49790 1475 aaKnown RBP9.6□□□□□ -0.87
HMGB1-203ENST00000341423 USP17L15C9J2P7 530 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 USP17L13C9JLJ4 530 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 USP17L11C9JVI0 530 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 USP17L18D6R9N7 530 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 USP17L22D6RA61 530 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 USP17L17D6RBQ6 530 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 USP17L19D6RCP7 530 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 USP17L20D6RJB6 530 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 PQBP1O60828 265 aaKnown RBP9.59□□□□□ -0.87
HMGB1-203ENST00000341423 USP17L24Q0WX57 530 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 ADAT2Q7Z6V5 191 aaKnown RBP9.59□□□□□ -0.87
HMGB1-203ENST00000341423 RIOK1Q9BRS2 568 aaKnown RBP9.59□□□□□ -0.87
HMGB1-203ENST00000341423 SENP6Q9GZR1 1112 aaPredicted RBP9.59□□□□□ -0.87
HMGB1-203ENST00000341423 COPRSQ9NQ92 184 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 PI4KBQ9UBF8 816 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 AKT3Q9Y243 479 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 PCDHA1Q9Y5I3 950 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 ERVV-1B6SEH8 477 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 MAPK4P31152 587 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 EEPD1Q7L9B9 569 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 FOXP4Q8IVH2 680 aaPredicted RBP9.59□□□□□ -0.87
HMGB1-203ENST00000341423 AKAP7Q9P0M2 348 aaPredicted RBP9.59□□□□□ -0.87
HMGB1-203ENST00000341423 BCCIPQ9P287 314 aaKnown RBP eCLIP9.59□□□□□ -0.87
HMGB1-203ENST00000341423 PNPLA6Q8IY17 1366 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 IQSEC2Q5JU85 1478 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 GNA11P29992 359 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 SNX16P57768 344 aa9.59□□□□□ -0.87
HMGB1-203ENST00000341423 OLFM4Q6UX06 510 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 110.4 ms