RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 SLFN5Q08AF3 891 aa18.36■□□□□ 0.53
CCDC88B-201ENST00000301897 ATRNL1Q5VV63 1379 aa18.36■□□□□ 0.53
CCDC88B-201ENST00000301897 SPTY2D1Q68D10 685 aaPredicted RBP18.36■□□□□ 0.53
CCDC88B-201ENST00000301897 GPAT2Q6NUI2 795 aa18.36■□□□□ 0.53
CCDC88B-201ENST00000301897 PRRT2Q7Z6L0 340 aaPredicted RBP18.36■□□□□ 0.53
CCDC88B-201ENST00000301897 DPF3Q92784 378 aa18.36■□□□□ 0.53
CCDC88B-201ENST00000301897 RNF208Q9H0X6 261 aa18.36■□□□□ 0.53
CCDC88B-201ENST00000301897 LRRFIP2Q9Y608 721 aaKnown RBP18.36■□□□□ 0.53
CCDC88B-201ENST00000301897 ZHX2Q9Y6X8 837 aa18.36■□□□□ 0.53
CCDC88B-201ENST00000301897 GAKO14976 1311 aa18.35■□□□□ 0.53
CCDC88B-201ENST00000301897 PHF20L1A8MW92 1017 aa18.35■□□□□ 0.53
CCDC88B-201ENST00000301897 ECM2O94769 699 aaPredicted RBP18.35■□□□□ 0.53
CCDC88B-201ENST00000301897 CT47B1P0C2W7 299 aaPredicted RBP18.35■□□□□ 0.53
CCDC88B-201ENST00000301897 PTPRAP18433 802 aa18.35■□□□□ 0.53
CCDC88B-201ENST00000301897 PHKA1P46020 1223 aa18.35■□□□□ 0.53
CCDC88B-201ENST00000301897 RGS3P49796 1198 aa18.35■□□□□ 0.53
CCDC88B-201ENST00000301897 MAP3K10Q02779 954 aa18.35■□□□□ 0.53
CCDC88B-201ENST00000301897 DZIP1Q86YF9 867 aaKnown RBP18.35■□□□□ 0.53
CCDC88B-201ENST00000301897 ZSCAN29Q8IWY8 852 aaPredicted RBP18.35■□□□□ 0.53
CCDC88B-201ENST00000301897 FAM163AQ96GL9 167 aaPredicted RBP18.35■□□□□ 0.53
CCDC88B-201ENST00000301897 NR2E3Q9Y5X4 410 aa18.35■□□□□ 0.53
CCDC88B-201ENST00000301897 CTNND1O60716 968 aaKnown RBP18.34■□□□□ 0.53
CCDC88B-201ENST00000301897 PRKCZQ05513 592 aa18.34■□□□□ 0.53
CCDC88B-201ENST00000301897 AFG3L2Q9Y4W6 797 aa18.34■□□□□ 0.53
CCDC88B-201ENST00000301897 CYP2C8P10632 490 aa18.33■□□□□ 0.52
CCDC88B-201ENST00000301897 CCDC102BQ68D86 513 aa18.33■□□□□ 0.52
CCDC88B-201ENST00000301897 GADL1Q6ZQY3 521 aa18.33■□□□□ 0.52
CCDC88B-201ENST00000301897 UBE2Q1Q7Z7E8 422 aa18.33■□□□□ 0.52
CCDC88B-201ENST00000301897 ZFPM1Q8IX07 1006 aa18.33■□□□□ 0.52
CCDC88B-201ENST00000301897 API5Q9BZZ5 524 aaKnown RBP18.33■□□□□ 0.52
CCDC88B-201ENST00000301897 COPRSQ9NQ92 184 aa18.33■□□□□ 0.52
CCDC88B-201ENST00000301897 PTPRFP10586 1907 aa18.33■□□□□ 0.52
CCDC88B-201ENST00000301897 RFX7Q2KHR2 1363 aa18.32■□□□□ 0.52
CCDC88B-201ENST00000301897 ADCY3O60266 1144 aa18.32■□□□□ 0.52
CCDC88B-201ENST00000301897 MAP4K4O95819 1239 aaPredicted RBP18.32■□□□□ 0.52
CCDC88B-201ENST00000301897 CHRDL2Q6WN34 429 aa18.32■□□□□ 0.52
CCDC88B-201ENST00000301897 PXYLP1Q8TE99 480 aa18.32■□□□□ 0.52
CCDC88B-201ENST00000301897 SMCR8Q8TEV9 937 aaPredicted RBP18.32■□□□□ 0.52
CCDC88B-201ENST00000301897 U2AF1L4Q8WU68 220 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-201ENST00000301897 AKAP2Q9Y2D5 859 aa18.32■□□□□ 0.52
CCDC88B-201ENST00000301897 DOCK1Q14185 1865 aa18.32■□□□□ 0.52
CCDC88B-201ENST00000301897 SZT2Q5T011 3432 aa18.32■□□□□ 0.52
CCDC88B-201ENST00000301897 NPM3O75607 178 aaKnown RBP18.31■□□□□ 0.52
CCDC88B-201ENST00000301897 FARP2O94887 1054 aaPredicted RBP18.31■□□□□ 0.52
CCDC88B-201ENST00000301897 IRF5Q13568 498 aa18.31■□□□□ 0.52
CCDC88B-201ENST00000301897 ABCF2Q9UG63 623 aa18.31■□□□□ 0.52
CCDC88B-201ENST00000301897 PNMA3Q9UL41 463 aa18.31■□□□□ 0.52
CCDC88B-201ENST00000301897 MROH7-TTC4A0A0A0MT08 1334 aa18.3■□□□□ 0.52
CCDC88B-201ENST00000301897 TNPO2O14787 897 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-201ENST00000301897 TBC1D12O60347 775 aa18.3■□□□□ 0.52
CCDC88B-201ENST00000301897 SGPL1O95470 568 aa18.3■□□□□ 0.52
CCDC88B-201ENST00000301897 RASGRF1Q13972 1273 aa18.3■□□□□ 0.52
CCDC88B-201ENST00000301897 MVPQ14764 893 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-201ENST00000301897 TBC1D2Q9BYX2 928 aa18.3■□□□□ 0.52
CCDC88B-201ENST00000301897 GABRQQ9UN88 632 aa18.3■□□□□ 0.52
CCDC88B-201ENST00000301897 AGTPBP1Q9UPW5 1226 aa18.3■□□□□ 0.52
CCDC88B-201ENST00000301897 PHIPQ8WWQ0 1821 aa18.29■□□□□ 0.52
CCDC88B-201ENST00000301897 ADORA1P30542 326 aa18.29■□□□□ 0.52
CCDC88B-201ENST00000301897 BTDP43251 543 aa18.29■□□□□ 0.52
CCDC88B-201ENST00000301897 FLT3LGP49771 235 aa18.29■□□□□ 0.52
CCDC88B-201ENST00000301897 GSTO1P78417 241 aa18.29■□□□□ 0.52
CCDC88B-201ENST00000301897 SH3BP5LQ7L8J4 393 aa18.29■□□□□ 0.52
CCDC88B-201ENST00000301897 PROCA1Q8NCQ7 364 aaPredicted RBP18.29■□□□□ 0.52
CCDC88B-201ENST00000301897 COA7Q96BR5 231 aa18.29■□□□□ 0.52
CCDC88B-201ENST00000301897 UNC93B1Q9H1C4 597 aa18.29■□□□□ 0.52
CCDC88B-201ENST00000301897 PA2G4Q9UQ80 394 aaKnown RBP18.29■□□□□ 0.52
CCDC88B-201ENST00000301897 DDTLA6NHG4 134 aaPredicted RBP18.28■□□□□ 0.52
CCDC88B-201ENST00000301897 TRIM75PA6NK02 468 aa18.28■□□□□ 0.52
CCDC88B-201ENST00000301897 LDHCP07864 332 aa18.28■□□□□ 0.52
CCDC88B-201ENST00000301897 GNAI3P08754 354 aa18.28■□□□□ 0.52
CCDC88B-201ENST00000301897 PICALMQ13492 652 aa18.28■□□□□ 0.52
CCDC88B-201ENST00000301897 ERICH6Q7L0X2 663 aa18.28■□□□□ 0.52
CCDC88B-201ENST00000301897 RBM27Q9P2N5 1060 aaKnown RBP18.28■□□□□ 0.52
CCDC88B-201ENST00000301897 NOB1Q9ULX3 412 aaKnown RBP18.28■□□□□ 0.52
CCDC88B-201ENST00000301897 GPR75-ASB3A0A0A6YYF3 556 aa18.27■□□□□ 0.52
CCDC88B-201ENST00000301897 A0A1W2PPC1 479 aa18.27■□□□□ 0.52
CCDC88B-201ENST00000301897 INHAP05111 366 aa18.27■□□□□ 0.52
CCDC88B-201ENST00000301897 TIMM10P62072 90 aa18.27■□□□□ 0.52
CCDC88B-201ENST00000301897 PABPC4Q13310 644 aaKnown RBP eCLIP18.27■□□□□ 0.522e-9■■□□□ 12.8
CCDC88B-201ENST00000301897 FAM110CQ1W6H9 321 aa18.27■□□□□ 0.52
CCDC88B-201ENST00000301897 TRMT2AQ8IZ69 625 aaKnown RBP18.27■□□□□ 0.52
CCDC88B-201ENST00000301897 OSBPL5Q9H0X9 879 aaPredicted RBP18.27■□□□□ 0.52
CCDC88B-201ENST00000301897 DDX4Q9NQI0 724 aaKnown RBP18.27■□□□□ 0.52
CCDC88B-201ENST00000301897 DOCK3Q8IZD9 2030 aa18.27■□□□□ 0.51
CCDC88B-201ENST00000301897 COL2A1P02458 1487 aaPredicted RBP18.26■□□□□ 0.51
CCDC88B-201ENST00000301897 A0A1B0GUL7 405 aa18.26■□□□□ 0.51
CCDC88B-201ENST00000301897 ZBTB7BO15156 539 aaPredicted RBP18.26■□□□□ 0.51
CCDC88B-201ENST00000301897 TFRCP02786 760 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-201ENST00000301897 GCLCP48506 637 aaPredicted RBP18.26■□□□□ 0.51
CCDC88B-201ENST00000301897 MECOMQ03112 1051 aa18.26■□□□□ 0.51
CCDC88B-201ENST00000301897 XAGE2Q96GT9 111 aa18.26■□□□□ 0.51
CCDC88B-201ENST00000301897 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.26■□□□□ 0.51
CCDC88B-201ENST00000301897 EVI5O60447 810 aa18.25■□□□□ 0.51
CCDC88B-201ENST00000301897 ELNP15502 786 aa18.25■□□□□ 0.51
CCDC88B-201ENST00000301897 RHBDL3P58872 404 aa18.25■□□□□ 0.51
CCDC88B-201ENST00000301897 MTX1Q13505 466 aa18.25■□□□□ 0.51
CCDC88B-201ENST00000301897 ARHGAP45Q92619 1136 aa18.25■□□□□ 0.51
CCDC88B-201ENST00000301897 MEIS3Q99687 375 aa18.25■□□□□ 0.51
CCDC88B-201ENST00000301897 PAK6Q9NQU5 681 aaPredicted RBP18.25■□□□□ 0.51
CCDC88B-201ENST00000301897 SRGAP3O43295 1099 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms