RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 PCGF6Q9BYE7 350 aa4.99□□□□□ -1.61
SCN1A-221ENST00000641996 PRDM10Q9NQV6 1147 aa4.99□□□□□ -1.61
SCN1A-221ENST00000641996 RBM25P49756 843 aaKnown RBP4.99□□□□□ -1.61
SCN1A-221ENST00000641996 ACIN1Q9UKV3 1341 aaKnown RBP4.99□□□□□ -1.61
SCN1A-221ENST00000641996 CNGB1Q14028 1251 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-221ENST00000641996 OS9Q13438 667 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-221ENST00000641996 FGD1P98174 961 aa4.97□□□□□ -1.61
SCN1A-221ENST00000641996 APPP05067 770 aa4.97□□□□□ -1.61
SCN1A-221ENST00000641996 PSMD1Q99460 953 aa4.96□□□□□ -1.62
SCN1A-221ENST00000641996 ZNF316A6NFI3 1004 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-221ENST00000641996 FBLN2P98095 1184 aa4.95□□□□□ -1.62
SCN1A-221ENST00000641996 MAPK8IP2Q13387 824 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-221ENST00000641996 CNPY4Q8N129 248 aa4.94□□□□□ -1.62
SCN1A-221ENST00000641996 CANXP27824 592 aaKnown RBP4.94□□□□□ -1.62
SCN1A-221ENST00000641996 FAM9BQ8IZU0 186 aa4.94□□□□□ -1.62
SCN1A-221ENST00000641996 NAP1L2Q9ULW6 460 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-221ENST00000641996 ERICH6BQ5W0A0 696 aa4.93□□□□□ -1.62
SCN1A-221ENST00000641996 CHMP4BQ9H444 224 aaKnown RBP4.92□□□□□ -1.62
SCN1A-221ENST00000641996 ZNF592Q92610 1267 aa4.92□□□□□ -1.62
SCN1A-221ENST00000641996 PLCD4Q9BRC7 762 aa4.92□□□□□ -1.62
SCN1A-221ENST00000641996 IGSF3O75054 1194 aa4.91□□□□□ -1.62
SCN1A-221ENST00000641996 ZFP91Q96JP5 570 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-221ENST00000641996 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-221ENST00000641996 BRPF3Q9ULD4 1205 aa4.9□□□□□ -1.62
SCN1A-221ENST00000641996 FAM50AQ14320 339 aaKnown RBP4.9□□□□□ -1.63
SCN1A-221ENST00000641996 PPP1R1BQ9UD71 204 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-221ENST00000641996 TNNT2P45379 298 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-221ENST00000641996 AEBP1Q8IUX7 1158 aa4.89□□□□□ -1.63
SCN1A-221ENST00000641996 CNKSR2Q8WXI2 1034 aa4.89□□□□□ -1.63
SCN1A-221ENST00000641996 ZMYND15Q9H091 742 aa4.88□□□□□ -1.63
SCN1A-221ENST00000641996 LAS1LQ9Y4W2 734 aaKnown RBP4.88□□□□□ -1.63
SCN1A-221ENST00000641996 BBXQ8WY36 941 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-221ENST00000641996 ARID3CA6NKF2 412 aa4.87□□□□□ -1.63
SCN1A-221ENST00000641996 CLSTN1O94985 981 aa4.86□□□□□ -1.63
SCN1A-221ENST00000641996 FOXD4L5Q5VV16 416 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-221ENST00000641996 FOXD4L4Q8WXT5 416 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-221ENST00000641996 NEUROD1Q13562 356 aa4.86□□□□□ -1.63
SCN1A-221ENST00000641996 PLCD3Q8N3E9 789 aa4.85□□□□□ -1.63
SCN1A-221ENST00000641996 ZNF428Q96B54 188 aa4.85□□□□□ -1.63
SCN1A-221ENST00000641996 AAMPQ13685 434 aa4.85□□□□□ -1.63
SCN1A-221ENST00000641996 BCCIPQ9P287 314 aaKnown RBP eCLIP4.85□□□□□ -1.63
SCN1A-221ENST00000641996 TRIM41Q8WV44 630 aa4.84□□□□□ -1.63
SCN1A-221ENST00000641996 RAD21O60216 631 aa4.84□□□□□ -1.64
SCN1A-221ENST00000641996 CWC22Q9HCG8 908 aaKnown RBP4.84□□□□□ -1.64
SCN1A-221ENST00000641996 DNTTIP2Q5QJE6 756 aaKnown RBP4.83□□□□□ -1.64
SCN1A-221ENST00000641996 ATP1B4Q9UN42 357 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-221ENST00000641996 LMOD2Q6P5Q4 547 aa4.83□□□□□ -1.64
SCN1A-221ENST00000641996 PTMAP06454 111 aaKnown RBP4.83□□□□□ -1.64
SCN1A-221ENST00000641996 KDM2AQ9Y2K7 1162 aa4.83□□□□□ -1.64
SCN1A-221ENST00000641996 HSP90AA2PQ14568 343 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-221ENST00000641996 HSP90AA1P07900 732 aaKnown RBP4.82□□□□□ -1.64
SCN1A-221ENST00000641996 TICAM2Q86XR7 235 aa4.81□□□□□ -1.64
SCN1A-221ENST00000641996 KDM4AO75164 1064 aa4.81□□□□□ -1.64
SCN1A-221ENST00000641996 PHF23Q9BUL5 403 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-221ENST00000641996 TMX4Q9H1E5 349 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-221ENST00000641996 KCTD17Q8N5Z5 321 aa4.8□□□□□ -1.64
SCN1A-221ENST00000641996 RSPH6AQ9H0K4 717 aa4.79□□□□□ -1.64
SCN1A-221ENST00000641996 FAM193AP78312 1265 aa4.79□□□□□ -1.64
SCN1A-221ENST00000641996 CALRP27797 417 aaKnown RBP4.79□□□□□ -1.64
SCN1A-221ENST00000641996 FOSBP53539 338 aa4.79□□□□□ -1.64
SCN1A-221ENST00000641996 GPATCH11Q8N954 259 aa4.79□□□□□ -1.64
SCN1A-221ENST00000641996 SOX12O15370 315 aa4.79□□□□□ -1.64
SCN1A-221ENST00000641996 ANP32BQ92688 251 aaKnown RBP4.78□□□□□ -1.64
SCN1A-221ENST00000641996 TMED8Q6PL24 325 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-221ENST00000641996 SECISBP2LQ93073 1101 aaKnown RBP4.77□□□□□ -1.65
SCN1A-221ENST00000641996 E9PSI1 815 aa4.77□□□□□ -1.65
SCN1A-221ENST00000641996 NEUROD2Q15784 382 aa4.76□□□□□ -1.65
SCN1A-221ENST00000641996 FTSJ3Q8IY81 847 aaKnown RBP4.76□□□□□ -1.65
SCN1A-221ENST00000641996 RSPH4AQ5TD94 716 aa4.76□□□□□ -1.65
SCN1A-221ENST00000641996 TSHZ2Q9NRE2 1034 aa4.76□□□□□ -1.65
SCN1A-221ENST00000641996 SETD1BQ9UPS6 1966 aaKnown RBP4.76□□□□□ -1.65
SCN1A-221ENST00000641996 IRX3P78415 501 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-221ENST00000641996 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.75□□□□□ -1.65
SCN1A-221ENST00000641996 CERS3Q8IU89 383 aa4.75□□□□□ -1.65
SCN1A-221ENST00000641996 GON4LQ3T8J9 2241 aa4.75□□□□□ -1.65
SCN1A-221ENST00000641996 PPP6R1Q9UPN7 881 aa4.75□□□□□ -1.65
SCN1A-221ENST00000641996 IPO4Q8TEX9 1081 aaKnown RBP4.75□□□□□ -1.65
SCN1A-221ENST00000641996 APBB1O00213 710 aa4.75□□□□□ -1.65
SCN1A-221ENST00000641996 NOL8Q76FK4 1167 aaKnown RBP4.74□□□□□ -1.65
SCN1A-221ENST00000641996 PIAS4Q8N2W9 510 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-221ENST00000641996 MEX3CQ5U5Q3 659 aaKnown RBP4.74□□□□□ -1.65
SCN1A-221ENST00000641996 NEFMP07197 916 aa4.73□□□□□ -1.65
SCN1A-221ENST00000641996 ANAPC15P60006 121 aa4.73□□□□□ -1.65
SCN1A-221ENST00000641996 FOXD4L6Q3SYB3 417 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-221ENST00000641996 FOXD4L3Q6VB84 417 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-221ENST00000641996 IL27Q8NEV9 243 aa4.73□□□□□ -1.65
SCN1A-221ENST00000641996 VGLL3A8MV65 326 aa4.72□□□□□ -1.65
SCN1A-221ENST00000641996 ADRA2BP18089 450 aa4.72□□□□□ -1.65
SCN1A-221ENST00000641996 ANP32AP39687 249 aaKnown RBP4.72□□□□□ -1.65
SCN1A-221ENST00000641996 MTMR7Q9Y216 660 aa4.71□□□□□ -1.66
SCN1A-221ENST00000641996 PIK3R5Q8WYR1 880 aa4.71□□□□□ -1.66
SCN1A-221ENST00000641996 GZF1Q9H116 711 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-221ENST00000641996 FAM177A1Q8N128 213 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-221ENST00000641996 TRHP20396 242 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-221ENST00000641996 TRIM44Q96DX7 344 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-221ENST00000641996 HDAC5Q9UQL6 1122 aa4.7□□□□□ -1.66
SCN1A-221ENST00000641996 P3H3Q8IVL6 736 aa4.69□□□□□ -1.66
SCN1A-221ENST00000641996 PUS7Q96PZ0 661 aaKnown RBP4.69□□□□□ -1.66
SCN1A-221ENST00000641996 ISY1Q9ULR0 285 aaKnown RBP4.69□□□□□ -1.66
SCN1A-221ENST00000641996 TEX2Q8IWB9 1127 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms