RNA–Protein interactions for RNA: ENST00000639240.1

ATM-228, Transcript of ATM serine/threonine kinase, humanhuman

TSL 5 BASIC

Gene ATM, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATM-228ENST00000639240 PLCD3Q8N3E9 789 aa10.36□□□□□ -0.75
ATM-228ENST00000639240 CCDC61Q9Y6R9 512 aa10.36□□□□□ -0.75
ATM-228ENST00000639240 OTUD5Q96G74 571 aa10.35□□□□□ -0.75
ATM-228ENST00000639240 NUBP1P53384 320 aa10.32□□□□□ -0.76
ATM-228ENST00000639240 MS4A3Q96HJ5 214 aa10.32□□□□□ -0.76
ATM-228ENST00000639240 DCBLD2Q96PD2 775 aa10.31□□□□□ -0.76
ATM-228ENST00000639240 PELP1Q8IZL8 1130 aaKnown RBP10.29□□□□□ -0.76
ATM-228ENST00000639240 PLEKHG5O94827 1062 aa10.28□□□□□ -0.76
ATM-228ENST00000639240 KIF12Q96FN5 646 aa10.28□□□□□ -0.76
ATM-228ENST00000639240 TRPC6Q9Y210 931 aa10.25□□□□□ -0.77
ATM-228ENST00000639240 MAP3K13O43283 966 aa10.24□□□□□ -0.77
ATM-228ENST00000639240 FBXO3Q9UK99 471 aa10.24□□□□□ -0.77
ATM-228ENST00000639240 VASPP50552 380 aaPredicted RBP10.22□□□□□ -0.77
ATM-228ENST00000639240 POTEB2H3BUK9 544 aa10.21□□□□□ -0.77
ATM-228ENST00000639240 ATMINO43313 823 aaPredicted RBP10.2□□□□□ -0.78
ATM-228ENST00000639240 ASTLQ6HA08 431 aaPredicted RBP10.2□□□□□ -0.78
ATM-228ENST00000639240 ZBTB47Q9UFB7 747 aaPredicted RBP10.19□□□□□ -0.78
ATM-228ENST00000639240 ATN1P54259 1190 aaPredicted RBP10.15□□□□□ -0.78
ATM-228ENST00000639240 BMP2KQ9NSY1 1161 aaPredicted RBP10.14□□□□□ -0.79
ATM-228ENST00000639240 IFNLR1Q8IU57 520 aaPredicted RBP10.12□□□□□ -0.79
ATM-228ENST00000639240 FAM212AQ96EL1 285 aa10.11□□□□□ -0.79
ATM-228ENST00000639240 IFNL1Q8IU54 200 aa10.1□□□□□ -0.79
ATM-228ENST00000639240 PCDHB13Q9Y5F0 798 aa10.1□□□□□ -0.79
ATM-228ENST00000639240 POTEFA5A3E0 1075 aa10.09□□□□□ -0.79
ATM-228ENST00000639240 POTEJP0CG39 1038 aa10.09□□□□□ -0.79
ATM-228ENST00000639240 DCAF8Q5TAQ9 597 aa10.09□□□□□ -0.79
ATM-228ENST00000639240 KLHL34Q8N239 644 aa10.08□□□□□ -0.8
ATM-228ENST00000639240 METRNQ9UJH8 293 aa10.08□□□□□ -0.8
ATM-228ENST00000639240 TTLL13PA6NNM8 815 aa10.07□□□□□ -0.8
ATM-228ENST00000639240 PYGBP11216 843 aa10.07□□□□□ -0.8
ATM-228ENST00000639240 TIE1P35590 1138 aa10.07□□□□□ -0.8
ATM-228ENST00000639240 SGIP1Q9BQI5 828 aa10.07□□□□□ -0.8
ATM-228ENST00000639240 LCE2DQ5TA82 110 aaPredicted RBP10.05□□□□□ -0.8
ATM-228ENST00000639240 SLC39A7Q92504 469 aa10.05□□□□□ -0.8
ATM-228ENST00000639240 C7P10643 843 aa10.04□□□□□ -0.8
ATM-228ENST00000639240 PCDHB8Q9UN66 801 aa10.01□□□□□ -0.81
ATM-228ENST00000639240 COLQQ9Y215 455 aaPredicted RBP10□□□□□ -0.81
ATM-228ENST00000639240 TRIM35Q9UPQ4 493 aa9.99□□□□□ -0.81
ATM-228ENST00000639240 SPOCK2Q92563 424 aa9.96□□□□□ -0.82
ATM-228ENST00000639240 TMEM106CQ9BVX2 250 aa9.96□□□□□ -0.82
ATM-228ENST00000639240 GSE1Q14687 1217 aa9.95□□□□□ -0.82
ATM-228ENST00000639240 CHRM1P11229 460 aaPredicted RBP9.93□□□□□ -0.82
ATM-228ENST00000639240 FAM163AQ96GL9 167 aaPredicted RBP9.93□□□□□ -0.82
ATM-228ENST00000639240 IER5LQ5T953 404 aa9.88□□□□□ -0.83
ATM-228ENST00000639240 CIZ1Q9ULV3 898 aaPredicted RBP9.88□□□□□ -0.83
ATM-228ENST00000639240 IRX5P78411 483 aaPredicted RBP9.87□□□□□ -0.83
ATM-228ENST00000639240 CDAN1Q8IWY9 1227 aa9.86□□□□□ -0.83
ATM-228ENST00000639240 SEC24BO95487 1268 aa9.85□□□□□ -0.83
ATM-228ENST00000639240 ZNF467Q7Z7K2 595 aaPredicted RBP9.84□□□□□ -0.83
ATM-228ENST00000639240 PSEN1P49768 467 aa9.81□□□□□ -0.84
ATM-228ENST00000639240 MAMSTRQ6ZN01 415 aa9.79□□□□□ -0.84
ATM-228ENST00000639240 PDCD7Q8N8D1 485 aaKnown RBP9.77□□□□□ -0.85
ATM-228ENST00000639240 PLCG2P16885 1265 aa9.76□□□□□ -0.85
ATM-228ENST00000639240 RNF25Q96BH1 459 aaPredicted RBP9.76□□□□□ -0.85
ATM-228ENST00000639240 OCEL1Q9H607 264 aa9.76□□□□□ -0.85
ATM-228ENST00000639240 SCUBE2Q9NQ36 999 aa9.76□□□□□ -0.85
ATM-228ENST00000639240 PDAP1Q13442 181 aaKnown RBP9.75□□□□□ -0.85
ATM-228ENST00000639240 MMRN1Q13201 1228 aa9.74□□□□□ -0.85
ATM-228ENST00000639240 ILDR1Q86SU0 546 aaPredicted RBP9.72□□□□□ -0.85
ATM-228ENST00000639240 CABP2Q9NPB3 220 aa9.7□□□□□ -0.86
ATM-228ENST00000639240 DPY19L2Q6NUT2 758 aa9.69□□□□□ -0.86
ATM-228ENST00000639240 MKRN3Q13064 507 aaKnown RBP9.68□□□□□ -0.86
ATM-228ENST00000639240 TRIM41Q8WV44 630 aa9.68□□□□□ -0.86
ATM-228ENST00000639240 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.67□□□□□ -0.866e-8■■■■□ 22.7
ATM-228ENST00000639240 SLAIN1Q8ND83 568 aa9.66□□□□□ -0.86
ATM-228ENST00000639240 GOLGA2Q08379 1002 aa9.65□□□□□ -0.86
ATM-228ENST00000639240 SPNS2Q8IVW8 549 aa9.64□□□□□ -0.87
ATM-228ENST00000639240 RIOK3O14730 519 aaKnown RBP9.63□□□□□ -0.87
ATM-228ENST00000639240 EFCAB3Q8N7B9 438 aa9.63□□□□□ -0.87
ATM-228ENST00000639240 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.62□□□□□ -0.87
ATM-228ENST00000639240 PKD2Q13563 968 aa9.62□□□□□ -0.87
ATM-228ENST00000639240 ZFP91Q96JP5 570 aaPredicted RBP9.62□□□□□ -0.87
ATM-228ENST00000639240 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.57□□□□□ -0.88
ATM-228ENST00000639240 VGFO15240 615 aaPredicted RBP9.56□□□□□ -0.88
ATM-228ENST00000639240 ST18O60284 1047 aa9.56□□□□□ -0.88
ATM-228ENST00000639240 L3MBTL3Q96JM7 780 aaPredicted RBP9.56□□□□□ -0.88
ATM-228ENST00000639240 MS4A4AQ96JQ5 239 aa9.55□□□□□ -0.88
ATM-228ENST00000639240 RGL2O15211 777 aa9.54□□□□□ -0.88
ATM-228ENST00000639240 ECM2O94769 699 aaPredicted RBP9.53□□□□□ -0.88
ATM-228ENST00000639240 TMEM121BQ9BXQ6 578 aaPredicted RBP9.52□□□□□ -0.89
ATM-228ENST00000639240 PHF8Q9UPP1 1060 aa9.52□□□□□ -0.89
ATM-228ENST00000639240 BOLA1Q9Y3E2 137 aa9.52□□□□□ -0.89
ATM-228ENST00000639240 C3orf67Q6ZVT6 689 aa9.5□□□□□ -0.89
ATM-228ENST00000639240 BCL11BQ9C0K0 894 aaPredicted RBP9.5□□□□□ -0.89
ATM-228ENST00000639240 SOX12O15370 315 aa9.48□□□□□ -0.89
ATM-228ENST00000639240 TMEM92Q6UXU6 159 aa9.47□□□□□ -0.89
ATM-228ENST00000639240 FBXO22Q8NEZ5 403 aa9.46□□□□□ -0.9
ATM-228ENST00000639240 STK24Q9Y6E0 443 aa9.45□□□□□ -0.9
ATM-228ENST00000639240 MICALL2Q8IY33 904 aa9.44□□□□□ -0.9
ATM-228ENST00000639240 MFRPQ9BY79 579 aa9.44□□□□□ -0.9
ATM-228ENST00000639240 STK25O00506 426 aa9.43□□□□□ -0.9
ATM-228ENST00000639240 HOXB3P14651 431 aaPredicted RBP9.42□□□□□ -0.9
ATM-228ENST00000639240 MARVELD3Q96A59 401 aa9.42□□□□□ -0.9
ATM-228ENST00000639240 SNPHO15079 494 aa9.4□□□□□ -0.9
ATM-228ENST00000639240 POTEB3A0JP26 581 aa9.38□□□□□ -0.91
ATM-228ENST00000639240 G3V3G9 751 aa9.38□□□□□ -0.91
ATM-228ENST00000639240 POTEBQ6S5H4 581 aa9.38□□□□□ -0.91
ATM-228ENST00000639240 NLRP6P59044 892 aa9.37□□□□□ -0.91
ATM-228ENST00000639240 TAOK2Q9UL54 1235 aa9.36□□□□□ -0.91
ATM-228ENST00000639240 PPP1R37O75864 691 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms