RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 GALR2O43603 387 aaPredicted RBP14.16□□□□□ -0.14
CD44-239ENST00000639002 POTEIP0CG38 1075 aa14.14□□□□□ -0.15
CD44-239ENST00000639002 IFNLR1Q8IU57 520 aaPredicted RBP14.12□□□□□ -0.15
CD44-239ENST00000639002 KLHL34Q8N239 644 aa14.08□□□□□ -0.16
CD44-239ENST00000639002 KIF12Q96FN5 646 aa14.08□□□□□ -0.16
CD44-239ENST00000639002 MS4A3Q96HJ5 214 aa14.06□□□□□ -0.16
CD44-239ENST00000639002 MAP3K13O43283 966 aa14.01□□□□□ -0.17
CD44-239ENST00000639002 FAM212AQ96EL1 285 aa14.01□□□□□ -0.17
CD44-239ENST00000639002 DCAF8Q5TAQ9 597 aa13.98□□□□□ -0.17
CD44-239ENST00000639002 DCBLD2Q96PD2 775 aa13.98□□□□□ -0.17
CD44-239ENST00000639002 SPOCK2Q92563 424 aa13.94□□□□□ -0.18
CD44-239ENST00000639002 TRPC6Q9Y210 931 aa13.94□□□□□ -0.18
CD44-239ENST00000639002 PELP1Q8IZL8 1130 aaKnown RBP13.9□□□□□ -0.18
CD44-239ENST00000639002 PYGBP11216 843 aa13.89□□□□□ -0.19
CD44-239ENST00000639002 ASTLQ6HA08 431 aaPredicted RBP13.87□□□□□ -0.19
CD44-239ENST00000639002 SGIP1Q9BQI5 828 aa13.87□□□□□ -0.19
CD44-239ENST00000639002 PCDHB13Q9Y5F0 798 aa13.87□□□□□ -0.19
CD44-239ENST00000639002 ATMINO43313 823 aaPredicted RBP13.86□□□□□ -0.19
CD44-239ENST00000639002 GSE1Q14687 1217 aa13.86□□□□□ -0.19
CD44-239ENST00000639002 IFNL1Q8IU54 200 aa13.85□□□□□ -0.19
CD44-239ENST00000639002 BMP2KQ9NSY1 1161 aaPredicted RBP13.83□□□□□ -0.2
CD44-239ENST00000639002 ATN1P54259 1190 aaPredicted RBP13.81□□□□□ -0.2
CD44-239ENST00000639002 TIE1P35590 1138 aa13.79□□□□□ -0.2
CD44-239ENST00000639002 CHRM1P11229 460 aaPredicted RBP13.78□□□□□ -0.2
CD44-239ENST00000639002 CIZ1Q9ULV3 898 aaPredicted RBP13.78□□□□□ -0.2
CD44-239ENST00000639002 LHX8Q68G74 356 aa13.76□□□□□ -0.21
CD44-239ENST00000639002 PCDHB8Q9UN66 801 aa13.76□□□□□ -0.21
CD44-239ENST00000639002 TTLL13PA6NNM8 815 aa13.75□□□□□ -0.21
CD44-239ENST00000639002 POTEB2H3BUK9 544 aa13.69□□□□□ -0.22
CD44-239ENST00000639002 SLC39A7Q92504 469 aa13.67□□□□□ -0.22
CD44-239ENST00000639002 METRNQ9UJH8 293 aa13.67□□□□□ -0.22
CD44-239ENST00000639002 C7P10643 843 aa13.66□□□□□ -0.22
CD44-239ENST00000639002 TMEM106CQ9BVX2 250 aa13.66□□□□□ -0.22
CD44-239ENST00000639002 POTEFA5A3E0 1075 aa13.65□□□□□ -0.22
CD44-239ENST00000639002 ZNF467Q7Z7K2 595 aaPredicted RBP13.64□□□□□ -0.23
CD44-239ENST00000639002 TRIM35Q9UPQ4 493 aa13.64□□□□□ -0.23
CD44-239ENST00000639002 POTEJP0CG39 1038 aa13.58□□□□□ -0.24
CD44-239ENST00000639002 TRIM41Q8WV44 630 aa13.57□□□□□ -0.24
CD44-239ENST00000639002 COLQQ9Y215 455 aaPredicted RBP13.57□□□□□ -0.24
CD44-239ENST00000639002 PSEN1P49768 467 aa13.55□□□□□ -0.24
CD44-239ENST00000639002 RNF25Q96BH1 459 aaPredicted RBP13.54□□□□□ -0.24
CD44-239ENST00000639002 IER5LQ5T953 404 aa13.53□□□□□ -0.24
CD44-239ENST00000639002 PDAP1Q13442 181 aaKnown RBP13.51□□□□□ -0.25
CD44-239ENST00000639002 OTUD5Q96G74 571 aa13.51□□□□□ -0.25
CD44-239ENST00000639002 PKD2Q13563 968 aa13.5□□□□□ -0.25
CD44-239ENST00000639002 IRX5P78411 483 aaPredicted RBP13.48□□□□□ -0.25
CD44-239ENST00000639002 SEC24BO95487 1268 aa13.45□□□□□ -0.26
CD44-239ENST00000639002 RIOK3O14730 519 aaKnown RBP13.43□□□□□ -0.26
CD44-239ENST00000639002 ECM2O94769 699 aaPredicted RBP13.4□□□□□ -0.26
CD44-239ENST00000639002 OCEL1Q9H607 264 aa13.38□□□□□ -0.27
CD44-239ENST00000639002 CABP2Q9NPB3 220 aa13.38□□□□□ -0.27
CD44-239ENST00000639002 PLCG2P16885 1265 aa13.37□□□□□ -0.27
CD44-239ENST00000639002 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.35□□□□□ -0.27
CD44-239ENST00000639002 RGL2O15211 777 aa13.35□□□□□ -0.27
CD44-239ENST00000639002 MKRN3Q13064 507 aaKnown RBP13.35□□□□□ -0.27
CD44-239ENST00000639002 PDCD7Q8N8D1 485 aaKnown RBP13.35□□□□□ -0.27
CD44-239ENST00000639002 ZFP91Q96JP5 570 aaPredicted RBP13.35□□□□□ -0.27
CD44-239ENST00000639002 VGFO15240 615 aaPredicted RBP13.34□□□□□ -0.27
CD44-239ENST00000639002 GOLGA2Q08379 1002 aa13.34□□□□□ -0.27
CD44-239ENST00000639002 ILDR1Q86SU0 546 aaPredicted RBP13.34□□□□□ -0.27
CD44-239ENST00000639002 MAMSTRQ6ZN01 415 aa13.31□□□□□ -0.28
CD44-239ENST00000639002 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.3□□□□□ -0.28
CD44-239ENST00000639002 EFCAB3Q8N7B9 438 aa13.29□□□□□ -0.28
CD44-239ENST00000639002 DPY19L2Q6NUT2 758 aa13.26□□□□□ -0.29
CD44-239ENST00000639002 SCUBE2Q9NQ36 999 aa13.26□□□□□ -0.29
CD44-239ENST00000639002 BCL11BQ9C0K0 894 aaPredicted RBP13.22□□□□□ -0.29
CD44-239ENST00000639002 TAOK2Q9UL54 1235 aa13.18□□□□□ -0.3
CD44-239ENST00000639002 STK24Q9Y6E0 443 aa13.17□□□□□ -0.3
CD44-239ENST00000639002 STK25O00506 426 aa13.16□□□□□ -0.3
CD44-239ENST00000639002 SOX12O15370 315 aa13.16□□□□□ -0.3
CD44-239ENST00000639002 L3MBTL3Q96JM7 780 aaPredicted RBP13.15□□□□□ -0.3
CD44-239ENST00000639002 MS4A4AQ96JQ5 239 aa13.15□□□□□ -0.3
CD44-239ENST00000639002 PHF8Q9UPP1 1060 aa13.15□□□□□ -0.3
CD44-239ENST00000639002 SLAIN1Q8ND83 568 aa13.13□□□□□ -0.31
CD44-239ENST00000639002 FBXO22Q8NEZ5 403 aa13.1□□□□□ -0.31
CD44-239ENST00000639002 MFRPQ9BY79 579 aa13.09□□□□□ -0.31
CD44-239ENST00000639002 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.09□□□□□ -0.31
CD44-239ENST00000639002 BOLA1Q9Y3E2 137 aa13.09□□□□□ -0.31
CD44-239ENST00000639002 LCE2DQ5TA82 110 aaPredicted RBP13.08□□□□□ -0.32
CD44-239ENST00000639002 TMEM121BQ9BXQ6 578 aaPredicted RBP13.07□□□□□ -0.32
CD44-239ENST00000639002 NLRP6P59044 892 aa13.03□□□□□ -0.32
CD44-239ENST00000639002 C3orf67Q6ZVT6 689 aa13.03□□□□□ -0.32
CD44-239ENST00000639002 HS6ST3Q8IZP7 471 aa13.02□□□□□ -0.33
CD44-239ENST00000639002 FAM163AQ96GL9 167 aaPredicted RBP13.02□□□□□ -0.33
CD44-239ENST00000639002 MICALL2Q8IY33 904 aa13□□□□□ -0.33
CD44-239ENST00000639002 CHGAP10645 457 aaKnown RBP12.98□□□□□ -0.33
CD44-239ENST00000639002 G3V3G9 751 aa12.96□□□□□ -0.33
CD44-239ENST00000639002 TMEM92Q6UXU6 159 aa12.95□□□□□ -0.34
CD44-239ENST00000639002 NKX1-1Q15270 411 aaPredicted RBP12.92□□□□□ -0.34
CD44-239ENST00000639002 DNAJC5Q9H3Z4 198 aa12.92□□□□□ -0.34
CD44-239ENST00000639002 POTEMA6NI47 508 aa12.91□□□□□ -0.34
CD44-239ENST00000639002 ST18O60284 1047 aa12.91□□□□□ -0.34
CD44-239ENST00000639002 PPP1R37O75864 691 aa12.91□□□□□ -0.34
CD44-239ENST00000639002 POTEGQ6S5H5 508 aa12.9□□□□□ -0.34
CD44-239ENST00000639002 SNPHO15079 494 aa12.85□□□□□ -0.35
CD44-239ENST00000639002 RTN4Q9NQC3 1192 aaKnown RBP12.85□□□□□ -0.35
CD44-239ENST00000639002 HOXB3P14651 431 aaPredicted RBP12.84□□□□□ -0.35
CD44-239ENST00000639002 AMER1Q5JTC6 1135 aaPredicted RBP12.81□□□□□ -0.36
CD44-239ENST00000639002 DCAF8L2P0C7V8 631 aa12.79□□□□□ -0.36
CD44-239ENST00000639002 KIF3CO14782 793 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms