RNA–Protein interactions for RNA: ENST00000592705.5

DNMT1-228, Transcript of DNA methyltransferase 1, humanhuman

TSL 1 (best)

Gene DNMT1, Length 5,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-228ENST00000592705 CEP164Q9UPV0 1460 aa17.23■□□□□ 0.35
DNMT1-228ENST00000592705 CANXP27824 592 aaKnown RBP17.23■□□□□ 0.35
DNMT1-228ENST00000592705 NPM2Q86SE8 214 aaKnown RBP17.2■□□□□ 0.34
DNMT1-228ENST00000592705 FAM9BQ8IZU0 186 aa17.2■□□□□ 0.34
DNMT1-228ENST00000592705 CHIC2Q9UKJ5 165 aa17.19■□□□□ 0.34
DNMT1-228ENST00000592705 BAZ1AQ9NRL2 1556 aaPredicted RBP17.17■□□□□ 0.34
DNMT1-228ENST00000592705 CECR2Q9BXF3 1484 aa17.14■□□□□ 0.33
DNMT1-228ENST00000592705 PLEKHG5O94827 1062 aa17.13■□□□□ 0.33
DNMT1-228ENST00000592705 MLECQ14165 292 aa17.1■□□□□ 0.33
DNMT1-228ENST00000592705 MRS2Q9HD23 443 aa17.1■□□□□ 0.33
DNMT1-228ENST00000592705 ZBTB7CA1YPR0 619 aa17.09■□□□□ 0.33
DNMT1-228ENST00000592705 KIF27Q86VH2 1401 aa17.09■□□□□ 0.33
DNMT1-228ENST00000592705 CFDP1Q9UEE9 299 aaPredicted RBP17.09■□□□□ 0.33
DNMT1-228ENST00000592705 TMC1Q8TDI8 760 aa17.08■□□□□ 0.32
DNMT1-228ENST00000592705 EIF4G2P78344 907 aaKnown RBP eCLIP17.07■□□□□ 0.32
DNMT1-228ENST00000592705 CCDC136Q96JN2 1154 aa17.07■□□□□ 0.32
DNMT1-228ENST00000592705 SENP3Q9H4L4 574 aaPredicted RBP17.06■□□□□ 0.32
DNMT1-228ENST00000592705 HIRIP3Q9BW71 556 aaPredicted RBP17.04■□□□□ 0.32
DNMT1-228ENST00000592705 HDGFP51858 240 aaKnown RBP17.04■□□□□ 0.32
DNMT1-228ENST00000592705 OSCARQ8IYS5 282 aa17.01■□□□□ 0.31
DNMT1-228ENST00000592705 SOGA1O94964 1423 aa16.99■□□□□ 0.31
DNMT1-228ENST00000592705 LMOD2Q6P5Q4 547 aa16.99■□□□□ 0.31
DNMT1-228ENST00000592705 BCL11AQ9H165 835 aa16.98■□□□□ 0.31
DNMT1-228ENST00000592705 RRP7BPQ9NSQ0 103 aa16.98■□□□□ 0.31
DNMT1-228ENST00000592705 KDM2AQ9Y2K7 1162 aa16.97■□□□□ 0.31
DNMT1-228ENST00000592705 CARMIL2Q6F5E8 1435 aa16.96■□□□□ 0.31
DNMT1-228ENST00000592705 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.96■□□□□ 0.31
DNMT1-228ENST00000592705 IRX6P78412 446 aaPredicted RBP16.95■□□□□ 0.3
DNMT1-228ENST00000592705 CYB5RLQ6IPT4 315 aa16.95■□□□□ 0.3
DNMT1-228ENST00000592705 SALL2Q9Y467 1007 aaPredicted RBP16.95■□□□□ 0.3
DNMT1-228ENST00000592705 MROH2BQ7Z745 1585 aa16.94■□□□□ 0.3
DNMT1-228ENST00000592705 UPF2Q9HAU5 1272 aaKnown RBP16.93■□□□□ 0.3
DNMT1-228ENST00000592705 CCNB3Q8WWL7 1395 aa16.93■□□□□ 0.3
DNMT1-228ENST00000592705 VPS8Q8N3P4 1428 aa16.92■□□□□ 0.3
DNMT1-228ENST00000592705 WDR43Q15061 677 aaKnown RBP eCLIP16.91■□□□□ 0.3
DNMT1-228ENST00000592705 SMARCA2P51531 1590 aa16.91■□□□□ 0.3
DNMT1-228ENST00000592705 CCDC88BA6NC98 1476 aa16.89■□□□□ 0.29
DNMT1-228ENST00000592705 TIMELESSQ9UNS1 1208 aa16.88■□□□□ 0.29
DNMT1-228ENST00000592705 NBR1Q14596 966 aa16.88■□□□□ 0.29
DNMT1-228ENST00000592705 FHAD1B1AJZ9 1412 aa16.87■□□□□ 0.29
DNMT1-228ENST00000592705 SUPT16HQ9Y5B9 1047 aaKnown RBP16.87■□□□□ 0.29
DNMT1-228ENST00000592705 ANP32EQ9BTT0 268 aa16.87■□□□□ 0.29
DNMT1-228ENST00000592705 EIF4G1Q04637 1599 aaKnown RBP16.86■□□□□ 0.29
DNMT1-228ENST00000592705 SIN3AQ96ST3 1273 aa16.86■□□□□ 0.29
DNMT1-228ENST00000592705 ABCC8Q09428 1581 aa16.85■□□□□ 0.29
DNMT1-228ENST00000592705 CUX2O14529 1486 aa16.85■□□□□ 0.29
DNMT1-228ENST00000592705 POGKQ9P215 609 aa16.85■□□□□ 0.29
DNMT1-228ENST00000592705 KANK1Q14678 1352 aa16.84■□□□□ 0.29
DNMT1-228ENST00000592705 RGL3Q3MIN7 710 aa16.83■□□□□ 0.28
DNMT1-228ENST00000592705 TDRD9Q8NDG6 1382 aaKnown RBP16.83■□□□□ 0.28
DNMT1-228ENST00000592705 GGT6Q6P531 493 aa16.83■□□□□ 0.28
DNMT1-228ENST00000592705 CARMIL1Q5VZK9 1371 aa16.82■□□□□ 0.28
DNMT1-228ENST00000592705 CADPSQ9ULU8 1353 aa16.81■□□□□ 0.28
DNMT1-228ENST00000592705 EFCAB2Q5VUJ9 269 aa16.8■□□□□ 0.28
DNMT1-228ENST00000592705 HSP90AA1P07900 732 aaKnown RBP16.79■□□□□ 0.28
DNMT1-228ENST00000592705 ANP32BQ92688 251 aaKnown RBP16.79■□□□□ 0.28
DNMT1-228ENST00000592705 SETD5Q9C0A6 1442 aa16.78■□□□□ 0.28
DNMT1-228ENST00000592705 CCER2I3L3R5 266 aa16.78■□□□□ 0.28
DNMT1-228ENST00000592705 PPP4R2Q9NY27 417 aa16.78■□□□□ 0.28
DNMT1-228ENST00000592705 TOP2AP11388 1531 aaKnown RBP16.77■□□□□ 0.27
DNMT1-228ENST00000592705 ARXQ96QS3 562 aa16.77■□□□□ 0.27
DNMT1-228ENST00000592705 DDRGK1Q96HY6 314 aa16.76■□□□□ 0.27
DNMT1-228ENST00000592705 NPHP1O15259 732 aa16.75■□□□□ 0.27
DNMT1-228ENST00000592705 WIZO95785 1651 aa16.73■□□□□ 0.27
DNMT1-228ENST00000592705 EIF5BO60841 1220 aaKnown RBP16.72■□□□□ 0.27
DNMT1-228ENST00000592705 CARD11Q9BXL7 1154 aa16.71■□□□□ 0.27
DNMT1-228ENST00000592705 CDCA8Q53HL2 280 aa16.71■□□□□ 0.27
DNMT1-228ENST00000592705 KANK4Q5T7N3 995 aaPredicted RBP16.71■□□□□ 0.26
DNMT1-228ENST00000592705 EID1Q9Y6B2 187 aa16.69■□□□□ 0.26
DNMT1-228ENST00000592705 ARHGAP35Q9NRY4 1499 aa16.69■□□□□ 0.26
DNMT1-228ENST00000592705 JPH4Q96JJ6 628 aa16.68■□□□□ 0.26
DNMT1-228ENST00000592705 RAB3GAP2Q9H2M9 1393 aa16.64■□□□□ 0.26
DNMT1-228ENST00000592705 BECN1Q14457 450 aa16.64■□□□□ 0.25
DNMT1-228ENST00000592705 PPM1GO15355 546 aaPredicted RBP16.63■□□□□ 0.25
DNMT1-228ENST00000592705 KNSTRNQ9Y448 316 aa16.63■□□□□ 0.25
DNMT1-228ENST00000592705 CCDC9Q9Y3X0 531 aaKnown RBP16.63■□□□□ 0.25
DNMT1-228ENST00000592705 CFAP53Q96M91 514 aa16.62■□□□□ 0.25
DNMT1-228ENST00000592705 FAM69CQ0P6D2 419 aa16.6■□□□□ 0.25
DNMT1-228ENST00000592705 NOP58Q9Y2X3 529 aaKnown RBP16.58■□□□□ 0.25
DNMT1-228ENST00000592705 HSPA5P11021 654 aaKnown RBP16.58■□□□□ 0.24
DNMT1-228ENST00000592705 ERICH6BQ5W0A0 696 aa16.58■□□□□ 0.24
DNMT1-228ENST00000592705 MYH16Q9H6N6 1097 aa16.56■□□□□ 0.24
DNMT1-228ENST00000592705 B4GALNT3Q6L9W6 998 aa16.56■□□□□ 0.24
DNMT1-228ENST00000592705 SENP3-EIF4A1A0A087X0R7 540 aa16.55■□□□□ 0.24
DNMT1-228ENST00000592705 GLIPR1L2Q4G1C9 344 aa16.55■□□□□ 0.24
DNMT1-228ENST00000592705 RBM19Q9Y4C8 960 aaKnown RBP16.55■□□□□ 0.24
DNMT1-228ENST00000592705 FMN1Q68DA7 1419 aa16.54■□□□□ 0.24
DNMT1-228ENST00000592705 KIF3BO15066 747 aa16.53■□□□□ 0.24
DNMT1-228ENST00000592705 RAPGEF2Q9Y4G8 1499 aa16.53■□□□□ 0.24
DNMT1-228ENST00000592705 ATAD2BQ9ULI0 1458 aa16.53■□□□□ 0.24
DNMT1-228ENST00000592705 PTPRGP23470 1445 aa16.52■□□□□ 0.23
DNMT1-228ENST00000592705 SPAG9O60271 1321 aaKnown RBP16.52■□□□□ 0.23
DNMT1-228ENST00000592705 WASHC2CQ9Y4E1 1318 aa16.52■□□□□ 0.23
DNMT1-228ENST00000592705 CSB-PGBD3P0DP91 1061 aa16.51■□□□□ 0.23
DNMT1-228ENST00000592705 FANCD2Q9BXW9 1451 aa16.51■□□□□ 0.23
DNMT1-228ENST00000592705 SRPK2P78362 688 aaKnown RBP16.5■□□□□ 0.23
DNMT1-228ENST00000592705 SMARCA4P51532 1647 aa16.5■□□□□ 0.23
DNMT1-228ENST00000592705 DHX57Q6P158 1386 aaKnown RBP16.5■□□□□ 0.23
DNMT1-228ENST00000592705 PAK3O75914 559 aaPredicted RBP16.5■□□□□ 0.23
DNMT1-228ENST00000592705 NUDCQ9Y266 331 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms