RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 RASEFQ8IZ41 740 aa11.75□□□□□ -0.53
VPS4B-203ENST00000588323 CCDC61Q9Y6R9 512 aa11.75□□□□□ -0.53
VPS4B-203ENST00000588323 MS4A3Q96HJ5 214 aa11.73□□□□□ -0.53
VPS4B-203ENST00000588323 KIF12Q96FN5 646 aa11.67□□□□□ -0.54
VPS4B-203ENST00000588323 NUBP1P53384 320 aa11.66□□□□□ -0.54
VPS4B-203ENST00000588323 ASTLQ6HA08 431 aaPredicted RBP11.62□□□□□ -0.55
VPS4B-203ENST00000588323 FAM212AQ96EL1 285 aa11.62□□□□□ -0.55
VPS4B-203ENST00000588323 MAP3K13O43283 966 aa11.61□□□□□ -0.55
VPS4B-203ENST00000588323 VASPP50552 380 aaPredicted RBP11.6□□□□□ -0.55
VPS4B-203ENST00000588323 ATMINO43313 823 aaPredicted RBP11.59□□□□□ -0.55
VPS4B-203ENST00000588323 PELP1Q8IZL8 1130 aaKnown RBP11.59□□□□□ -0.55
VPS4B-203ENST00000588323 KLHL34Q8N239 644 aa11.56□□□□□ -0.56
VPS4B-203ENST00000588323 DCAF8Q5TAQ9 597 aa11.54□□□□□ -0.56
VPS4B-203ENST00000588323 SLC39A7Q92504 469 aa11.54□□□□□ -0.56
VPS4B-203ENST00000588323 PCDHB13Q9Y5F0 798 aa11.54□□□□□ -0.56
VPS4B-203ENST00000588323 SGIP1Q9BQI5 828 aa11.53□□□□□ -0.56
VPS4B-203ENST00000588323 METRNQ9UJH8 293 aa11.53□□□□□ -0.56
VPS4B-203ENST00000588323 TRPC6Q9Y210 931 aa11.53□□□□□ -0.56
VPS4B-203ENST00000588323 C7P10643 843 aa11.52□□□□□ -0.57
VPS4B-203ENST00000588323 TIE1P35590 1138 aa11.52□□□□□ -0.57
VPS4B-203ENST00000588323 ATN1P54259 1190 aaPredicted RBP11.52□□□□□ -0.57
VPS4B-203ENST00000588323 BMP2KQ9NSY1 1161 aaPredicted RBP11.52□□□□□ -0.57
VPS4B-203ENST00000588323 POTEB2H3BUK9 544 aa11.47□□□□□ -0.57
VPS4B-203ENST00000588323 IFNL1Q8IU54 200 aa11.46□□□□□ -0.57
VPS4B-203ENST00000588323 TTLL13PA6NNM8 815 aa11.45□□□□□ -0.58
VPS4B-203ENST00000588323 PYGBP11216 843 aa11.44□□□□□ -0.58
VPS4B-203ENST00000588323 GSE1Q14687 1217 aa11.43□□□□□ -0.58
VPS4B-203ENST00000588323 OTUD5Q96G74 571 aa11.41□□□□□ -0.58
VPS4B-203ENST00000588323 IFNLR1Q8IU57 520 aaPredicted RBP11.38□□□□□ -0.59
VPS4B-203ENST00000588323 TMEM106CQ9BVX2 250 aa11.38□□□□□ -0.59
VPS4B-203ENST00000588323 TRIM35Q9UPQ4 493 aa11.38□□□□□ -0.59
VPS4B-203ENST00000588323 SEC24BO95487 1268 aa11.36□□□□□ -0.59
VPS4B-203ENST00000588323 SPOCK2Q92563 424 aa11.36□□□□□ -0.59
VPS4B-203ENST00000588323 MAMSTRQ6ZN01 415 aa11.35□□□□□ -0.59
VPS4B-203ENST00000588323 PCDHB8Q9UN66 801 aa11.34□□□□□ -0.59
VPS4B-203ENST00000588323 POTEFA5A3E0 1075 aa11.33□□□□□ -0.6
VPS4B-203ENST00000588323 POTEJP0CG39 1038 aa11.33□□□□□ -0.6
VPS4B-203ENST00000588323 IER5LQ5T953 404 aa11.33□□□□□ -0.6
VPS4B-203ENST00000588323 ZNF467Q7Z7K2 595 aaPredicted RBP11.3□□□□□ -0.6
VPS4B-203ENST00000588323 SCUBE2Q9NQ36 999 aa11.3□□□□□ -0.6
VPS4B-203ENST00000588323 CIZ1Q9ULV3 898 aaPredicted RBP11.3□□□□□ -0.6
VPS4B-203ENST00000588323 COLQQ9Y215 455 aaPredicted RBP11.3□□□□□ -0.6
VPS4B-203ENST00000588323 CHRM1P11229 460 aaPredicted RBP11.29□□□□□ -0.6
VPS4B-203ENST00000588323 PLCG2P16885 1265 aa11.24□□□□□ -0.61
VPS4B-203ENST00000588323 IRX5P78411 483 aaPredicted RBP11.19□□□□□ -0.62
VPS4B-203ENST00000588323 GOLGA2Q08379 1002 aa11.19□□□□□ -0.62
VPS4B-203ENST00000588323 PSEN1P49768 467 aa11.17□□□□□ -0.62
VPS4B-203ENST00000588323 OCEL1Q9H607 264 aa11.17□□□□□ -0.62
VPS4B-203ENST00000588323 PDAP1Q13442 181 aaKnown RBP11.16□□□□□ -0.62
VPS4B-203ENST00000588323 MKRN3Q13064 507 aaKnown RBP11.14□□□□□ -0.63
VPS4B-203ENST00000588323 TRIM41Q8WV44 630 aa11.14□□□□□ -0.63
VPS4B-203ENST00000588323 SLAIN1Q8ND83 568 aa11.08□□□□□ -0.64
VPS4B-203ENST00000588323 FAM163AQ96GL9 167 aaPredicted RBP11.08□□□□□ -0.64
VPS4B-203ENST00000588323 POTEMA6NI47 508 aa11.07□□□□□ -0.64
VPS4B-203ENST00000588323 POTEGQ6S5H5 508 aa11.06□□□□□ -0.64
VPS4B-203ENST00000588323 PDCD7Q8N8D1 485 aaKnown RBP11.06□□□□□ -0.64
VPS4B-203ENST00000588323 CABP2Q9NPB3 220 aa11.06□□□□□ -0.64
VPS4B-203ENST00000588323 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.06□□□□□ -0.64
VPS4B-203ENST00000588323 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.03□□□□□ -0.64
VPS4B-203ENST00000588323 L3MBTL3Q96JM7 780 aaPredicted RBP11.02□□□□□ -0.65
VPS4B-203ENST00000588323 LCE2DQ5TA82 110 aaPredicted RBP11□□□□□ -0.65
VPS4B-203ENST00000588323 RIOK3O14730 519 aaKnown RBP10.98□□□□□ -0.65
VPS4B-203ENST00000588323 C3orf67Q6ZVT6 689 aa10.98□□□□□ -0.65
VPS4B-203ENST00000588323 ILDR1Q86SU0 546 aaPredicted RBP10.95□□□□□ -0.66
VPS4B-203ENST00000588323 RNF25Q96BH1 459 aaPredicted RBP10.94□□□□□ -0.66
VPS4B-203ENST00000588323 G3V3G9 751 aa10.93□□□□□ -0.66
VPS4B-203ENST00000588323 PLSCR2Q9NRY7 297 aa10.93□□□□□ -0.66
VPS4B-203ENST00000588323 VGFO15240 615 aaPredicted RBP10.92□□□□□ -0.66
VPS4B-203ENST00000588323 DPY19L2Q6NUT2 758 aa10.92□□□□□ -0.66
VPS4B-203ENST00000588323 EFCAB3Q8N7B9 438 aa10.92□□□□□ -0.66
VPS4B-203ENST00000588323 SNPHO15079 494 aa10.91□□□□□ -0.66
VPS4B-203ENST00000588323 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.9□□□□□ -0.66
VPS4B-203ENST00000588323 ZFP91Q96JP5 570 aaPredicted RBP10.9□□□□□ -0.66
VPS4B-203ENST00000588323 PCDH10Q9P2E7 1040 aa10.9□□□□□ -0.66
VPS4B-203ENST00000588323 ST18O60284 1047 aa10.89□□□□□ -0.67
VPS4B-203ENST00000588323 BOLA1Q9Y3E2 137 aa10.88□□□□□ -0.67
VPS4B-203ENST00000588323 TAOK2Q9UL54 1235 aa10.87□□□□□ -0.67
VPS4B-203ENST00000588323 ECM2O94769 699 aaPredicted RBP10.86□□□□□ -0.67
VPS4B-203ENST00000588323 SOX12O15370 315 aa10.84□□□□□ -0.67
VPS4B-203ENST00000588323 TMEM121BQ9BXQ6 578 aaPredicted RBP10.81□□□□□ -0.68
VPS4B-203ENST00000588323 BCL11BQ9C0K0 894 aaPredicted RBP10.8□□□□□ -0.68
VPS4B-203ENST00000588323 PKD2Q13563 968 aa10.78□□□□□ -0.68
VPS4B-203ENST00000588323 PHF8Q9UPP1 1060 aa10.78□□□□□ -0.68
VPS4B-203ENST00000588323 STK24Q9Y6E0 443 aa10.78□□□□□ -0.68
VPS4B-203ENST00000588323 CDAN1Q8IWY9 1227 aa10.77□□□□□ -0.69
VPS4B-203ENST00000588323 STK25O00506 426 aa10.75□□□□□ -0.69
VPS4B-203ENST00000588323 NLRP6P59044 892 aa10.74□□□□□ -0.69
VPS4B-203ENST00000588323 MICALL2Q8IY33 904 aa10.74□□□□□ -0.69
VPS4B-203ENST00000588323 MS4A4AQ96JQ5 239 aa10.74□□□□□ -0.69
VPS4B-203ENST00000588323 RGL2O15211 777 aa10.73□□□□□ -0.69
VPS4B-203ENST00000588323 MARVELD3Q96A59 401 aa10.73□□□□□ -0.69
VPS4B-203ENST00000588323 EMP3P54852 163 aa10.69□□□□□ -0.7
VPS4B-203ENST00000588323 ZNF710Q8N1W2 664 aa10.67□□□□□ -0.7
VPS4B-203ENST00000588323 FBXO22Q8NEZ5 403 aa10.67□□□□□ -0.7
VPS4B-203ENST00000588323 HOXB3P14651 431 aaPredicted RBP10.66□□□□□ -0.7
VPS4B-203ENST00000588323 DOK7Q18PE1 504 aa10.66□□□□□ -0.7
VPS4B-203ENST00000588323 MFRPQ9BY79 579 aa10.66□□□□□ -0.7
VPS4B-203ENST00000588323 TMEM92Q6UXU6 159 aa10.64□□□□□ -0.71
VPS4B-203ENST00000588323 RIMBP2O15034 1052 aa10.61□□□□□ -0.71
VPS4B-203ENST00000588323 FAM205CA6NFA0 338 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms