RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 ZBTB47Q9UFB7 747 aaPredicted RBP14.21□□□□□ -0.13
SMCHD1-208ENST00000583344 VASPP50552 380 aaPredicted RBP14.18□□□□□ -0.14
SMCHD1-208ENST00000583344 NUBP1P53384 320 aa14.18□□□□□ -0.14
SMCHD1-208ENST00000583344 MS4A3Q96HJ5 214 aa14.17□□□□□ -0.14
SMCHD1-208ENST00000583344 KIF12Q96FN5 646 aa14.11□□□□□ -0.15
SMCHD1-208ENST00000583344 MAP3K13O43283 966 aa14.06□□□□□ -0.16
SMCHD1-208ENST00000583344 KLHL34Q8N239 644 aa14.05□□□□□ -0.16
SMCHD1-208ENST00000583344 FAM212AQ96EL1 285 aa14.05□□□□□ -0.16
SMCHD1-208ENST00000583344 LHX8Q68G74 356 aa14.03□□□□□ -0.16
SMCHD1-208ENST00000583344 TRPC6Q9Y210 931 aa14.01□□□□□ -0.17
SMCHD1-208ENST00000583344 PELP1Q8IZL8 1130 aaKnown RBP14□□□□□ -0.17
SMCHD1-208ENST00000583344 DCAF8Q5TAQ9 597 aa13.98□□□□□ -0.17
SMCHD1-208ENST00000583344 ATMINO43313 823 aaPredicted RBP13.97□□□□□ -0.17
SMCHD1-208ENST00000583344 ASTLQ6HA08 431 aaPredicted RBP13.97□□□□□ -0.17
SMCHD1-208ENST00000583344 IFNLR1Q8IU57 520 aaPredicted RBP13.95□□□□□ -0.18
SMCHD1-208ENST00000583344 PCDHB13Q9Y5F0 798 aa13.94□□□□□ -0.18
SMCHD1-208ENST00000583344 BMP2KQ9NSY1 1161 aaPredicted RBP13.92□□□□□ -0.18
SMCHD1-208ENST00000583344 PYGBP11216 843 aa13.9□□□□□ -0.18
SMCHD1-208ENST00000583344 ATN1P54259 1190 aaPredicted RBP13.9□□□□□ -0.18
SMCHD1-208ENST00000583344 IFNL1Q8IU54 200 aa13.89□□□□□ -0.19
SMCHD1-208ENST00000583344 SGIP1Q9BQI5 828 aa13.88□□□□□ -0.19
SMCHD1-208ENST00000583344 TIE1P35590 1138 aa13.86□□□□□ -0.19
SMCHD1-208ENST00000583344 METRNQ9UJH8 293 aa13.85□□□□□ -0.19
SMCHD1-208ENST00000583344 SPOCK2Q92563 424 aa13.84□□□□□ -0.19
SMCHD1-208ENST00000583344 TTLL13PA6NNM8 815 aa13.83□□□□□ -0.2
SMCHD1-208ENST00000583344 POTEB2H3BUK9 544 aa13.83□□□□□ -0.2
SMCHD1-208ENST00000583344 GSE1Q14687 1217 aa13.83□□□□□ -0.2
SMCHD1-208ENST00000583344 SLC39A7Q92504 469 aa13.83□□□□□ -0.2
SMCHD1-208ENST00000583344 C7P10643 843 aa13.8□□□□□ -0.2
SMCHD1-208ENST00000583344 PCDHB8Q9UN66 801 aa13.78□□□□□ -0.2
SMCHD1-208ENST00000583344 TMEM106CQ9BVX2 250 aa13.75□□□□□ -0.21
SMCHD1-208ENST00000583344 CIZ1Q9ULV3 898 aaPredicted RBP13.75□□□□□ -0.21
SMCHD1-208ENST00000583344 TRIM35Q9UPQ4 493 aa13.75□□□□□ -0.21
SMCHD1-208ENST00000583344 POTEFA5A3E0 1075 aa13.71□□□□□ -0.21
SMCHD1-208ENST00000583344 OTUD5Q96G74 571 aa13.7□□□□□ -0.22
SMCHD1-208ENST00000583344 POTEJP0CG39 1038 aa13.68□□□□□ -0.22
SMCHD1-208ENST00000583344 CHRM1P11229 460 aaPredicted RBP13.68□□□□□ -0.22
SMCHD1-208ENST00000583344 COLQQ9Y215 455 aaPredicted RBP13.66□□□□□ -0.22
SMCHD1-208ENST00000583344 ZNF467Q7Z7K2 595 aaPredicted RBP13.65□□□□□ -0.22
SMCHD1-208ENST00000583344 SEC24BO95487 1268 aa13.63□□□□□ -0.23
SMCHD1-208ENST00000583344 IER5LQ5T953 404 aa13.62□□□□□ -0.23
SMCHD1-208ENST00000583344 PSEN1P49768 467 aa13.55□□□□□ -0.24
SMCHD1-208ENST00000583344 IRX5P78411 483 aaPredicted RBP13.53□□□□□ -0.24
SMCHD1-208ENST00000583344 PLCG2P16885 1265 aa13.52□□□□□ -0.25
SMCHD1-208ENST00000583344 MAMSTRQ6ZN01 415 aa13.52□□□□□ -0.25
SMCHD1-208ENST00000583344 PDAP1Q13442 181 aaKnown RBP13.51□□□□□ -0.25
SMCHD1-208ENST00000583344 SCUBE2Q9NQ36 999 aa13.5□□□□□ -0.25
SMCHD1-208ENST00000583344 TRIM41Q8WV44 630 aa13.49□□□□□ -0.25
SMCHD1-208ENST00000583344 GOLGA2Q08379 1002 aa13.46□□□□□ -0.25
SMCHD1-208ENST00000583344 OCEL1Q9H607 264 aa13.45□□□□□ -0.26
SMCHD1-208ENST00000583344 MKRN3Q13064 507 aaKnown RBP13.43□□□□□ -0.26
SMCHD1-208ENST00000583344 RNF25Q96BH1 459 aaPredicted RBP13.42□□□□□ -0.26
SMCHD1-208ENST00000583344 CABP2Q9NPB3 220 aa13.41□□□□□ -0.26
SMCHD1-208ENST00000583344 PDCD7Q8N8D1 485 aaKnown RBP13.39□□□□□ -0.27
SMCHD1-208ENST00000583344 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.37□□□□□ -0.271e-7■■■□□ 16.4
SMCHD1-208ENST00000583344 RIOK3O14730 519 aaKnown RBP13.36□□□□□ -0.27
SMCHD1-208ENST00000583344 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.3□□□□□ -0.28
SMCHD1-208ENST00000583344 SLAIN1Q8ND83 568 aa13.3□□□□□ -0.28
SMCHD1-208ENST00000583344 ZFP91Q96JP5 570 aaPredicted RBP13.3□□□□□ -0.28
SMCHD1-208ENST00000583344 VGFO15240 615 aaPredicted RBP13.28□□□□□ -0.28
SMCHD1-208ENST00000583344 ECM2O94769 699 aaPredicted RBP13.28□□□□□ -0.28
SMCHD1-208ENST00000583344 PKD2Q13563 968 aa13.28□□□□□ -0.28
SMCHD1-208ENST00000583344 ILDR1Q86SU0 546 aaPredicted RBP13.28□□□□□ -0.28
SMCHD1-208ENST00000583344 EFCAB3Q8N7B9 438 aa13.28□□□□□ -0.28
SMCHD1-208ENST00000583344 DPY19L2Q6NUT2 758 aa13.27□□□□□ -0.29
SMCHD1-208ENST00000583344 LCE2DQ5TA82 110 aaPredicted RBP13.25□□□□□ -0.29
SMCHD1-208ENST00000583344 FAM163AQ96GL9 167 aaPredicted RBP13.25□□□□□ -0.29
SMCHD1-208ENST00000583344 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.23□□□□□ -0.29
SMCHD1-208ENST00000583344 L3MBTL3Q96JM7 780 aaPredicted RBP13.22□□□□□ -0.29
SMCHD1-208ENST00000583344 POTEMA6NI47 508 aa13.2□□□□□ -0.3
SMCHD1-208ENST00000583344 RGL2O15211 777 aa13.2□□□□□ -0.3
SMCHD1-208ENST00000583344 C3orf67Q6ZVT6 689 aa13.2□□□□□ -0.3
SMCHD1-208ENST00000583344 POTEGQ6S5H5 508 aa13.19□□□□□ -0.3
SMCHD1-208ENST00000583344 BCL11BQ9C0K0 894 aaPredicted RBP13.17□□□□□ -0.3
SMCHD1-208ENST00000583344 BOLA1Q9Y3E2 137 aa13.15□□□□□ -0.3
SMCHD1-208ENST00000583344 STK24Q9Y6E0 443 aa13.14□□□□□ -0.31
SMCHD1-208ENST00000583344 TAOK2Q9UL54 1235 aa13.13□□□□□ -0.31
SMCHD1-208ENST00000583344 PHF8Q9UPP1 1060 aa13.13□□□□□ -0.31
SMCHD1-208ENST00000583344 G3V3G9 751 aa13.11□□□□□ -0.31
SMCHD1-208ENST00000583344 STK25O00506 426 aa13.11□□□□□ -0.31
SMCHD1-208ENST00000583344 SOX12O15370 315 aa13.11□□□□□ -0.31
SMCHD1-208ENST00000583344 MS4A4AQ96JQ5 239 aa13.1□□□□□ -0.31
SMCHD1-208ENST00000583344 ST18O60284 1047 aa13.07□□□□□ -0.32
SMCHD1-208ENST00000583344 TMEM121BQ9BXQ6 578 aaPredicted RBP13.04□□□□□ -0.32
SMCHD1-208ENST00000583344 MICALL2Q8IY33 904 aa13.03□□□□□ -0.32
SMCHD1-208ENST00000583344 SNPHO15079 494 aa13.01□□□□□ -0.33
SMCHD1-208ENST00000583344 FBXO22Q8NEZ5 403 aa13.01□□□□□ -0.33
SMCHD1-208ENST00000583344 MFRPQ9BY79 579 aa13.01□□□□□ -0.33
SMCHD1-208ENST00000583344 NLRP6P59044 892 aa13□□□□□ -0.33
SMCHD1-208ENST00000583344 TMEM92Q6UXU6 159 aa12.95□□□□□ -0.34
SMCHD1-208ENST00000583344 PLSCR2Q9NRY7 297 aa12.93□□□□□ -0.34
SMCHD1-208ENST00000583344 MARVELD3Q96A59 401 aa12.92□□□□□ -0.34
SMCHD1-208ENST00000583344 HOXB3P14651 431 aaPredicted RBP12.89□□□□□ -0.35
SMCHD1-208ENST00000583344 HS6ST3Q8IZP7 471 aa12.88□□□□□ -0.35
SMCHD1-208ENST00000583344 PCDH10Q9P2E7 1040 aa12.88□□□□□ -0.35
SMCHD1-208ENST00000583344 CHGAP10645 457 aaKnown RBP12.86□□□□□ -0.35
SMCHD1-208ENST00000583344 CDAN1Q8IWY9 1227 aa12.85□□□□□ -0.35
SMCHD1-208ENST00000583344 PPP1R37O75864 691 aa12.82□□□□□ -0.36
SMCHD1-208ENST00000583344 EMP3P54852 163 aa12.82□□□□□ -0.36
SMCHD1-208ENST00000583344 DOK7Q18PE1 504 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms