RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 RASEFQ8IZ41 740 aa12.5□□□□□ -0.41
SMCHD1-204ENST00000581226 GSE1Q14687 1217 aa12.49□□□□□ -0.41
SMCHD1-204ENST00000581226 FAM212AQ96EL1 285 aa12.49□□□□□ -0.41
SMCHD1-204ENST00000581226 ECM2O94769 699 aaPredicted RBP12.43□□□□□ -0.42
SMCHD1-204ENST00000581226 LHX8Q68G74 356 aa12.43□□□□□ -0.42
SMCHD1-204ENST00000581226 TSPYL2Q9H2G4 693 aaPredicted RBP12.43□□□□□ -0.42
SMCHD1-204ENST00000581226 CD44P16070 742 aaKnown RBP12.4□□□□□ -0.42
SMCHD1-204ENST00000581226 PAK3O75914 559 aaPredicted RBP12.38□□□□□ -0.43
SMCHD1-204ENST00000581226 TRIM41Q8WV44 630 aa12.38□□□□□ -0.43
SMCHD1-204ENST00000581226 PYGBP11216 843 aa12.31□□□□□ -0.44
SMCHD1-204ENST00000581226 ZRANB1Q9UGI0 708 aa12.31□□□□□ -0.44
SMCHD1-204ENST00000581226 CCDC61Q9Y6R9 512 aa12.3□□□□□ -0.44
SMCHD1-204ENST00000581226 DCAF8L2P0C7V8 631 aa12.29□□□□□ -0.44
SMCHD1-204ENST00000581226 CHRM1P11229 460 aaPredicted RBP12.29□□□□□ -0.44
SMCHD1-204ENST00000581226 RGL2O15211 777 aa12.28□□□□□ -0.44
SMCHD1-204ENST00000581226 POTEIP0CG38 1075 aa12.28□□□□□ -0.44
SMCHD1-204ENST00000581226 CLCN6P51797 869 aa12.2□□□□□ -0.46
SMCHD1-204ENST00000581226 RNF25Q96BH1 459 aaPredicted RBP12.2□□□□□ -0.46
SMCHD1-204ENST00000581226 DCBLD2Q96PD2 775 aa12.2□□□□□ -0.46
SMCHD1-204ENST00000581226 PHF12Q96QT6 1004 aa12.19□□□□□ -0.46
SMCHD1-204ENST00000581226 RIOK3O14730 519 aaKnown RBP12.18□□□□□ -0.46
SMCHD1-204ENST00000581226 KIF12Q96FN5 646 aa12.18□□□□□ -0.46
SMCHD1-204ENST00000581226 ZNF579Q8NAF0 562 aaKnown RBP12.17□□□□□ -0.46
SMCHD1-204ENST00000581226 MAP3K13O43283 966 aa12.16□□□□□ -0.46
SMCHD1-204ENST00000581226 PCDHB13Q9Y5F0 798 aa12.15□□□□□ -0.46
SMCHD1-204ENST00000581226 ZNF467Q7Z7K2 595 aaPredicted RBP12.14□□□□□ -0.47
SMCHD1-204ENST00000581226 TAOK2Q9UL54 1235 aa12.14□□□□□ -0.47
SMCHD1-204ENST00000581226 PCDHB8Q9UN66 801 aa12.13□□□□□ -0.47
SMCHD1-204ENST00000581226 SGIP1Q9BQI5 828 aa12.12□□□□□ -0.47
SMCHD1-204ENST00000581226 VGFO15240 615 aaPredicted RBP12.1□□□□□ -0.47
SMCHD1-204ENST00000581226 IFNL1Q8IU54 200 aa12.09□□□□□ -0.47
SMCHD1-204ENST00000581226 CHGAP10645 457 aaKnown RBP12.08□□□□□ -0.48
SMCHD1-204ENST00000581226 GALR2O43603 387 aaPredicted RBP12.06□□□□□ -0.48
SMCHD1-204ENST00000581226 PDAP1Q13442 181 aaKnown RBP12.04□□□□□ -0.48
SMCHD1-204ENST00000581226 MS4A3Q96HJ5 214 aa12.04□□□□□ -0.48
SMCHD1-204ENST00000581226 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.03□□□□□ -0.48
SMCHD1-204ENST00000581226 ZFP91Q96JP5 570 aaPredicted RBP12.03□□□□□ -0.48
SMCHD1-204ENST00000581226 STK25O00506 426 aa12.02□□□□□ -0.49
SMCHD1-204ENST00000581226 PSEN1P49768 467 aa12.01□□□□□ -0.49
SMCHD1-204ENST00000581226 HS6ST3Q8IZP7 471 aa12.01□□□□□ -0.49
SMCHD1-204ENST00000581226 BCL11BQ9C0K0 894 aaPredicted RBP11.98□□□□□ -0.49
SMCHD1-204ENST00000581226 STK24Q9Y6E0 443 aa11.98□□□□□ -0.49
SMCHD1-204ENST00000581226 BBXQ8WY36 941 aaPredicted RBP11.97□□□□□ -0.49
SMCHD1-204ENST00000581226 TRPC6Q9Y210 931 aa11.95□□□□□ -0.5
SMCHD1-204ENST00000581226 TMEM106CQ9BVX2 250 aa11.92□□□□□ -0.5
SMCHD1-204ENST00000581226 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.92□□□□□ -0.5
SMCHD1-204ENST00000581226 TIE1P35590 1138 aa11.89□□□□□ -0.51
SMCHD1-204ENST00000581226 OTUD5Q96G74 571 aa11.89□□□□□ -0.51
SMCHD1-204ENST00000581226 POTEB2H3BUK9 544 aa11.87□□□□□ -0.51
SMCHD1-204ENST00000581226 DNAJC5Q9H3Z4 198 aa11.87□□□□□ -0.51
SMCHD1-204ENST00000581226 CABP2Q9NPB3 220 aa11.87□□□□□ -0.51
SMCHD1-204ENST00000581226 BMP2KQ9NSY1 1161 aaPredicted RBP11.86□□□□□ -0.51
SMCHD1-204ENST00000581226 TTLL13PA6NNM8 815 aa11.85□□□□□ -0.51
SMCHD1-204ENST00000581226 NKX1-1Q15270 411 aaPredicted RBP11.84□□□□□ -0.51
SMCHD1-204ENST00000581226 GOLGA2Q08379 1002 aa11.83□□□□□ -0.52
SMCHD1-204ENST00000581226 PAXIP1Q6ZW49 1069 aaPredicted RBP11.83□□□□□ -0.52
SMCHD1-204ENST00000581226 PELP1Q8IZL8 1130 aaKnown RBP11.83□□□□□ -0.52
SMCHD1-204ENST00000581226 PLCB2Q00722 1185 aa11.82□□□□□ -0.52
SMCHD1-204ENST00000581226 CFAP44Q96MT7 982 aa11.82□□□□□ -0.52
SMCHD1-204ENST00000581226 EFCAB3Q8N7B9 438 aa11.81□□□□□ -0.52
SMCHD1-204ENST00000581226 SPRYD3Q8NCJ5 442 aa11.81□□□□□ -0.52
SMCHD1-204ENST00000581226 ATMINO43313 823 aaPredicted RBP11.79□□□□□ -0.52
SMCHD1-204ENST00000581226 ATN1P54259 1190 aaPredicted RBP11.78□□□□□ -0.52
SMCHD1-204ENST00000581226 MKRN3Q13064 507 aaKnown RBP11.78□□□□□ -0.52
SMCHD1-204ENST00000581226 ASTLQ6HA08 431 aaPredicted RBP11.78□□□□□ -0.52
SMCHD1-204ENST00000581226 TRIM35Q9UPQ4 493 aa11.78□□□□□ -0.52
SMCHD1-204ENST00000581226 METRNQ9UJH8 293 aa11.77□□□□□ -0.53
SMCHD1-204ENST00000581226 SOX12O15370 315 aa11.76□□□□□ -0.53
SMCHD1-204ENST00000581226 GTPBP6O43824 516 aaPredicted RBP11.74□□□□□ -0.53
SMCHD1-204ENST00000581226 RYDENQ9NUL5 291 aaKnown RBP11.74□□□□□ -0.53
SMCHD1-204ENST00000581226 POTEMA6NI47 508 aa11.73□□□□□ -0.53
SMCHD1-204ENST00000581226 MFRPQ9BY79 579 aa11.73□□□□□ -0.53
SMCHD1-204ENST00000581226 SLC39A7Q92504 469 aa11.72□□□□□ -0.53
SMCHD1-204ENST00000581226 PHF8Q9UPP1 1060 aa11.72□□□□□ -0.53
SMCHD1-204ENST00000581226 NLRP6P59044 892 aa11.71□□□□□ -0.53
SMCHD1-204ENST00000581226 C7P10643 843 aa11.7□□□□□ -0.54
SMCHD1-204ENST00000581226 POTEGQ6S5H5 508 aa11.7□□□□□ -0.54
SMCHD1-204ENST00000581226 HAP1P54257 671 aaPredicted RBP11.68□□□□□ -0.54
SMCHD1-204ENST00000581226 SLC24A1O60721 1099 aa11.67□□□□□ -0.54
SMCHD1-204ENST00000581226 FBXO22Q8NEZ5 403 aa11.67□□□□□ -0.54
SMCHD1-204ENST00000581226 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.67□□□□□ -0.541e-7■■□□□ 14.3
SMCHD1-204ENST00000581226 IER5LQ5T953 404 aa11.65□□□□□ -0.54
SMCHD1-204ENST00000581226 POTEJP0CG39 1038 aa11.64□□□□□ -0.55
SMCHD1-204ENST00000581226 MAMSTRQ6ZN01 415 aa11.63□□□□□ -0.55
SMCHD1-204ENST00000581226 MS4A4AQ96JQ5 239 aa11.62□□□□□ -0.55
SMCHD1-204ENST00000581226 SEC24BO95487 1268 aa11.6□□□□□ -0.55
SMCHD1-204ENST00000581226 IRX5P78411 483 aaPredicted RBP11.6□□□□□ -0.55
SMCHD1-204ENST00000581226 ILDR1Q86SU0 546 aaPredicted RBP11.6□□□□□ -0.55
SMCHD1-204ENST00000581226 OCEL1Q9H607 264 aa11.6□□□□□ -0.55
SMCHD1-204ENST00000581226 PPP1R37O75864 691 aa11.59□□□□□ -0.55
SMCHD1-204ENST00000581226 PLCG2P16885 1265 aa11.59□□□□□ -0.55
SMCHD1-204ENST00000581226 TSHZ2Q9NRE2 1034 aa11.59□□□□□ -0.55
SMCHD1-204ENST00000581226 SCUBE2Q9NQ36 999 aa11.58□□□□□ -0.56
SMCHD1-204ENST00000581226 DPY19L2Q6NUT2 758 aa11.56□□□□□ -0.56
SMCHD1-204ENST00000581226 PDCD7Q8N8D1 485 aaKnown RBP11.56□□□□□ -0.56
SMCHD1-204ENST00000581226 COLQQ9Y215 455 aaPredicted RBP11.55□□□□□ -0.56
SMCHD1-204ENST00000581226 FAM163AQ96GL9 167 aaPredicted RBP11.54□□□□□ -0.56
SMCHD1-204ENST00000581226 PCDH10Q9P2E7 1040 aa11.53□□□□□ -0.56
SMCHD1-204ENST00000581226 POTEFA5A3E0 1075 aa11.51□□□□□ -0.57
SMCHD1-204ENST00000581226 G3V3G9 751 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms