RNA–Protein interactions for RNA: ENST00000559754.1

SPG11-218, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5

Gene SPG11, Length 411 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-218ENST00000559754 PHF12Q96QT6 1004 aa11.76□□□□□ -0.53
SPG11-218ENST00000559754 CCDC61Q9Y6R9 512 aa11.76□□□□□ -0.53
SPG11-218ENST00000559754 IFNLR1Q8IU57 520 aaPredicted RBP11.75□□□□□ -0.53
SPG11-218ENST00000559754 SPOCK2Q92563 424 aa11.73□□□□□ -0.53
SPG11-218ENST00000559754 DCAF8Q5TAQ9 597 aa11.71□□□□□ -0.53
SPG11-218ENST00000559754 GSE1Q14687 1217 aa11.69□□□□□ -0.54
SPG11-218ENST00000559754 GALR2O43603 387 aaPredicted RBP11.67□□□□□ -0.54
SPG11-218ENST00000559754 KIF12Q96FN5 646 aa11.67□□□□□ -0.54
SPG11-218ENST00000559754 DCBLD2Q96PD2 775 aa11.66□□□□□ -0.54
SPG11-218ENST00000559754 MS4A3Q96HJ5 214 aa11.63□□□□□ -0.55
SPG11-218ENST00000559754 SGIP1Q9BQI5 828 aa11.63□□□□□ -0.55
SPG11-218ENST00000559754 MAP3K13O43283 966 aa11.61□□□□□ -0.55
SPG11-218ENST00000559754 CIZ1Q9ULV3 898 aaPredicted RBP11.58□□□□□ -0.56
SPG11-218ENST00000559754 PCDHB13Q9Y5F0 798 aa11.57□□□□□ -0.56
SPG11-218ENST00000559754 PYGBP11216 843 aa11.56□□□□□ -0.56
SPG11-218ENST00000559754 POTEIP0CG38 1075 aa11.53□□□□□ -0.56
SPG11-218ENST00000559754 CHRM1P11229 460 aaPredicted RBP11.52□□□□□ -0.57
SPG11-218ENST00000559754 TRIM41Q8WV44 630 aa11.51□□□□□ -0.57
SPG11-218ENST00000559754 TIE1P35590 1138 aa11.49□□□□□ -0.57
SPG11-218ENST00000559754 IFNL1Q8IU54 200 aa11.49□□□□□ -0.57
SPG11-218ENST00000559754 ASTLQ6HA08 431 aaPredicted RBP11.48□□□□□ -0.57
SPG11-218ENST00000559754 ZNF467Q7Z7K2 595 aaPredicted RBP11.47□□□□□ -0.57
SPG11-218ENST00000559754 ATMINO43313 823 aaPredicted RBP11.46□□□□□ -0.57
SPG11-218ENST00000559754 BMP2KQ9NSY1 1161 aaPredicted RBP11.44□□□□□ -0.58
SPG11-218ENST00000559754 TRPC6Q9Y210 931 aa11.44□□□□□ -0.58
SPG11-218ENST00000559754 PCDHB8Q9UN66 801 aa11.41□□□□□ -0.58
SPG11-218ENST00000559754 TTLL13PA6NNM8 815 aa11.4□□□□□ -0.58
SPG11-218ENST00000559754 ATN1P54259 1190 aaPredicted RBP11.4□□□□□ -0.58
SPG11-218ENST00000559754 SLC39A7Q92504 469 aa11.4□□□□□ -0.58
SPG11-218ENST00000559754 TMEM106CQ9BVX2 250 aa11.38□□□□□ -0.59
SPG11-218ENST00000559754 C7P10643 843 aa11.37□□□□□ -0.59
SPG11-218ENST00000559754 PELP1Q8IZL8 1130 aaKnown RBP11.37□□□□□ -0.59
SPG11-218ENST00000559754 METRNQ9UJH8 293 aa11.34□□□□□ -0.59
SPG11-218ENST00000559754 TRIM35Q9UPQ4 493 aa11.34□□□□□ -0.59
SPG11-218ENST00000559754 PDAP1Q13442 181 aaKnown RBP11.33□□□□□ -0.6
SPG11-218ENST00000559754 LHX8Q68G74 356 aa11.33□□□□□ -0.6
SPG11-218ENST00000559754 PSEN1P49768 467 aa11.31□□□□□ -0.6
SPG11-218ENST00000559754 IER5LQ5T953 404 aa11.31□□□□□ -0.6
SPG11-218ENST00000559754 ECM2O94769 699 aaPredicted RBP11.29□□□□□ -0.6
SPG11-218ENST00000559754 RIOK3O14730 519 aaKnown RBP11.28□□□□□ -0.6
SPG11-218ENST00000559754 TAOK2Q9UL54 1235 aa11.27□□□□□ -0.61
SPG11-218ENST00000559754 GOLGA2Q08379 1002 aa11.26□□□□□ -0.61
SPG11-218ENST00000559754 PKD2Q13563 968 aa11.26□□□□□ -0.61
SPG11-218ENST00000559754 SEC24BO95487 1268 aa11.25□□□□□ -0.61
SPG11-218ENST00000559754 VGFO15240 615 aaPredicted RBP11.24□□□□□ -0.61
SPG11-218ENST00000559754 MKRN3Q13064 507 aaKnown RBP11.22□□□□□ -0.61
SPG11-218ENST00000559754 RNF25Q96BH1 459 aaPredicted RBP11.22□□□□□ -0.61
SPG11-218ENST00000559754 PLCG2P16885 1265 aa11.19□□□□□ -0.62
SPG11-218ENST00000559754 CABP2Q9NPB3 220 aa11.17□□□□□ -0.62
SPG11-218ENST00000559754 POTEFA5A3E0 1075 aa11.16□□□□□ -0.62
SPG11-218ENST00000559754 POTEB2H3BUK9 544 aa11.16□□□□□ -0.62
SPG11-218ENST00000559754 IRX5P78411 483 aaPredicted RBP11.16□□□□□ -0.62
SPG11-218ENST00000559754 OCEL1Q9H607 264 aa11.16□□□□□ -0.62
SPG11-218ENST00000559754 COLQQ9Y215 455 aaPredicted RBP11.16□□□□□ -0.62
SPG11-218ENST00000559754 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.15□□□□□ -0.62
SPG11-218ENST00000559754 MAMSTRQ6ZN01 415 aa11.15□□□□□ -0.62
SPG11-218ENST00000559754 ZFP91Q96JP5 570 aaPredicted RBP11.15□□□□□ -0.62
SPG11-218ENST00000559754 RGL2O15211 777 aa11.14□□□□□ -0.63
SPG11-218ENST00000559754 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.1□□□□□ -0.631e-6■■■■□ 19.6
SPG11-218ENST00000559754 SCUBE2Q9NQ36 999 aa11.09□□□□□ -0.63
SPG11-218ENST00000559754 STK25O00506 426 aa11.07□□□□□ -0.64
SPG11-218ENST00000559754 EFCAB3Q8N7B9 438 aa11.07□□□□□ -0.64
SPG11-218ENST00000559754 OTUD5Q96G74 571 aa11.07□□□□□ -0.64
SPG11-218ENST00000559754 BCL11BQ9C0K0 894 aaPredicted RBP11.07□□□□□ -0.64
SPG11-218ENST00000559754 POTEJP0CG39 1038 aa11.06□□□□□ -0.64
SPG11-218ENST00000559754 STK24Q9Y6E0 443 aa11.06□□□□□ -0.64
SPG11-218ENST00000559754 SOX12O15370 315 aa11.05□□□□□ -0.64
SPG11-218ENST00000559754 ILDR1Q86SU0 546 aaPredicted RBP11.05□□□□□ -0.64
SPG11-218ENST00000559754 PDCD7Q8N8D1 485 aaKnown RBP11.05□□□□□ -0.64
SPG11-218ENST00000559754 L3MBTL3Q96JM7 780 aaPredicted RBP11.03□□□□□ -0.64
SPG11-218ENST00000559754 G3V3G9 751 aa10.98□□□□□ -0.65
SPG11-218ENST00000559754 AMER1Q5JTC6 1135 aaPredicted RBP10.98□□□□□ -0.65
SPG11-218ENST00000559754 NLRP6P59044 892 aa10.96□□□□□ -0.65
SPG11-218ENST00000559754 HS6ST3Q8IZP7 471 aa10.95□□□□□ -0.66
SPG11-218ENST00000559754 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.95□□□□□ -0.66
SPG11-218ENST00000559754 PHF8Q9UPP1 1060 aa10.94□□□□□ -0.66
SPG11-218ENST00000559754 BOLA1Q9Y3E2 137 aa10.94□□□□□ -0.66
SPG11-218ENST00000559754 DPY19L2Q6NUT2 758 aa10.93□□□□□ -0.66
SPG11-218ENST00000559754 C3orf67Q6ZVT6 689 aa10.93□□□□□ -0.66
SPG11-218ENST00000559754 CHGAP10645 457 aaKnown RBP10.92□□□□□ -0.66
SPG11-218ENST00000559754 SLAIN1Q8ND83 568 aa10.91□□□□□ -0.66
SPG11-218ENST00000559754 DCAF8L2P0C7V8 631 aa10.89□□□□□ -0.67
SPG11-218ENST00000559754 FBXO22Q8NEZ5 403 aa10.88□□□□□ -0.67
SPG11-218ENST00000559754 MS4A4AQ96JQ5 239 aa10.88□□□□□ -0.67
SPG11-218ENST00000559754 MFRPQ9BY79 579 aa10.88□□□□□ -0.67
SPG11-218ENST00000559754 TMEM121BQ9BXQ6 578 aaPredicted RBP10.86□□□□□ -0.67
SPG11-218ENST00000559754 DNAJC5Q9H3Z4 198 aa10.85□□□□□ -0.67
SPG11-218ENST00000559754 RTN4Q9NQC3 1192 aaKnown RBP10.84□□□□□ -0.67
SPG11-218ENST00000559754 MICALL2Q8IY33 904 aa10.83□□□□□ -0.68
SPG11-218ENST00000559754 RYDENQ9NUL5 291 aaKnown RBP10.82□□□□□ -0.68
SPG11-218ENST00000559754 SNPHO15079 494 aa10.8□□□□□ -0.68
SPG11-218ENST00000559754 FAM163AQ96GL9 167 aaPredicted RBP10.75□□□□□ -0.69
SPG11-218ENST00000559754 NKX1-1Q15270 411 aaPredicted RBP10.73□□□□□ -0.69
SPG11-218ENST00000559754 PPP1R37O75864 691 aa10.69□□□□□ -0.7
SPG11-218ENST00000559754 TMEM92Q6UXU6 159 aa10.67□□□□□ -0.7
SPG11-218ENST00000559754 BBXQ8WY36 941 aaPredicted RBP10.65□□□□□ -0.7
SPG11-218ENST00000559754 GTPBP6O43824 516 aaPredicted RBP10.64□□□□□ -0.71
SPG11-218ENST00000559754 ST18O60284 1047 aa10.64□□□□□ -0.71
SPG11-218ENST00000559754 DOK7Q18PE1 504 aa10.64□□□□□ -0.71
SPG11-218ENST00000559754 LCE2DQ5TA82 110 aaPredicted RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms