RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 CCDC61Q9Y6R9 512 aa16.05■□□□□ 0.16
VPS13C-208ENST00000559119 MS4A3Q96HJ5 214 aa15.99■□□□□ 0.15
VPS13C-208ENST00000559119 NUBP1P53384 320 aa15.97■□□□□ 0.15
VPS13C-208ENST00000559119 VASPP50552 380 aaPredicted RBP15.96■□□□□ 0.15
VPS13C-208ENST00000559119 LHX8Q68G74 356 aa15.95■□□□□ 0.14
VPS13C-208ENST00000559119 KIF12Q96FN5 646 aa15.94■□□□□ 0.14
VPS13C-208ENST00000559119 FAM212AQ96EL1 285 aa15.92■□□□□ 0.14
VPS13C-208ENST00000559119 KLHL34Q8N239 644 aa15.9■□□□□ 0.14
VPS13C-208ENST00000559119 MAP3K13O43283 966 aa15.87■□□□□ 0.13
VPS13C-208ENST00000559119 DCAF8Q5TAQ9 597 aa15.82■□□□□ 0.12
VPS13C-208ENST00000559119 ASTLQ6HA08 431 aaPredicted RBP15.81■□□□□ 0.12
VPS13C-208ENST00000559119 ATMINO43313 823 aaPredicted RBP15.8■□□□□ 0.12
VPS13C-208ENST00000559119 PELP1Q8IZL8 1130 aaKnown RBP15.77■□□□□ 0.12
VPS13C-208ENST00000559119 PCDHB13Q9Y5F0 798 aa15.77■□□□□ 0.12
VPS13C-208ENST00000559119 SGIP1Q9BQI5 828 aa15.76■□□□□ 0.11
VPS13C-208ENST00000559119 TRPC6Q9Y210 931 aa15.73■□□□□ 0.11
VPS13C-208ENST00000559119 TIE1P35590 1138 aa15.71■□□□□ 0.11
VPS13C-208ENST00000559119 SLC39A7Q92504 469 aa15.71■□□□□ 0.11
VPS13C-208ENST00000559119 ATN1P54259 1190 aaPredicted RBP15.7■□□□□ 0.1
VPS13C-208ENST00000559119 BMP2KQ9NSY1 1161 aaPredicted RBP15.7■□□□□ 0.1
VPS13C-208ENST00000559119 METRNQ9UJH8 293 aa15.69■□□□□ 0.1
VPS13C-208ENST00000559119 C7P10643 843 aa15.68■□□□□ 0.1
VPS13C-208ENST00000559119 GSE1Q14687 1217 aa15.68■□□□□ 0.1
VPS13C-208ENST00000559119 PYGBP11216 843 aa15.67■□□□□ 0.1
VPS13C-208ENST00000559119 IFNLR1Q8IU57 520 aaPredicted RBP15.67■□□□□ 0.1
VPS13C-208ENST00000559119 IFNL1Q8IU54 200 aa15.66■□□□□ 0.1
VPS13C-208ENST00000559119 SPOCK2Q92563 424 aa15.64■□□□□ 0.09
VPS13C-208ENST00000559119 TTLL13PA6NNM8 815 aa15.62■□□□□ 0.09
VPS13C-208ENST00000559119 POTEB2H3BUK9 544 aa15.58■□□□□ 0.08
VPS13C-208ENST00000559119 TMEM106CQ9BVX2 250 aa15.55■□□□□ 0.08
VPS13C-208ENST00000559119 TRIM35Q9UPQ4 493 aa15.54■□□□□ 0.08
VPS13C-208ENST00000559119 CIZ1Q9ULV3 898 aaPredicted RBP15.53■□□□□ 0.08
VPS13C-208ENST00000559119 PCDHB8Q9UN66 801 aa15.52■□□□□ 0.08
VPS13C-208ENST00000559119 SEC24BO95487 1268 aa15.49■□□□□ 0.07
VPS13C-208ENST00000559119 OTUD5Q96G74 571 aa15.49■□□□□ 0.07
VPS13C-208ENST00000559119 CHRM1P11229 460 aaPredicted RBP15.48■□□□□ 0.07
VPS13C-208ENST00000559119 ZNF467Q7Z7K2 595 aaPredicted RBP15.48■□□□□ 0.07
VPS13C-208ENST00000559119 IER5LQ5T953 404 aa15.46■□□□□ 0.07
VPS13C-208ENST00000559119 POTEFA5A3E0 1075 aa15.42■□□□□ 0.06
VPS13C-208ENST00000559119 MAMSTRQ6ZN01 415 aa15.42■□□□□ 0.06
VPS13C-208ENST00000559119 COLQQ9Y215 455 aaPredicted RBP15.4■□□□□ 0.06
VPS13C-208ENST00000559119 POTEJP0CG39 1038 aa15.39■□□□□ 0.05
VPS13C-208ENST00000559119 SCUBE2Q9NQ36 999 aa15.36■□□□□ 0.05
VPS13C-208ENST00000559119 PLCG2P16885 1265 aa15.34■□□□□ 0.05
VPS13C-208ENST00000559119 TRIM41Q8WV44 630 aa15.32■□□□□ 0.04
VPS13C-208ENST00000559119 PSEN1P49768 467 aa15.31■□□□□ 0.04
VPS13C-208ENST00000559119 GOLGA2Q08379 1002 aa15.3■□□□□ 0.04
VPS13C-208ENST00000559119 PDAP1Q13442 181 aaKnown RBP15.28■□□□□ 0.04
VPS13C-208ENST00000559119 IRX5P78411 483 aaPredicted RBP15.27■□□□□ 0.04
VPS13C-208ENST00000559119 OCEL1Q9H607 264 aa15.25■□□□□ 0.03
VPS13C-208ENST00000559119 MKRN3Q13064 507 aaKnown RBP15.24■□□□□ 0.03
VPS13C-208ENST00000559119 CABP2Q9NPB3 220 aa15.14■□□□□ 0.01
VPS13C-208ENST00000559119 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.13■□□□□ 0.011e-8■□□□□ 10.4
VPS13C-208ENST00000559119 RIOK3O14730 519 aaKnown RBP15.09■□□□□ 0.01
VPS13C-208ENST00000559119 PDCD7Q8N8D1 485 aaKnown RBP15.08■□□□□ 0
VPS13C-208ENST00000559119 SLAIN1Q8ND83 568 aa15.08■□□□□ 0
VPS13C-208ENST00000559119 FAM163AQ96GL9 167 aaPredicted RBP15.05■□□□□ -0
VPS13C-208ENST00000559119 L3MBTL3Q96JM7 780 aaPredicted RBP15.04■□□□□ -0
VPS13C-208ENST00000559119 RNF25Q96BH1 459 aaPredicted RBP15.03■□□□□ -0
VPS13C-208ENST00000559119 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.03■□□□□ -0
VPS13C-208ENST00000559119 VGFO15240 615 aaPredicted RBP15.01□□□□□ -0.01
VPS13C-208ENST00000559119 POTEMA6NI47 508 aa14.98□□□□□ -0.01
VPS13C-208ENST00000559119 C3orf67Q6ZVT6 689 aa14.98□□□□□ -0.01
VPS13C-208ENST00000559119 ILDR1Q86SU0 546 aaPredicted RBP14.98□□□□□ -0.01
VPS13C-208ENST00000559119 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.97□□□□□ -0.01
VPS13C-208ENST00000559119 ECM2O94769 699 aaPredicted RBP14.97□□□□□ -0.01
VPS13C-208ENST00000559119 POTEGQ6S5H5 508 aa14.97□□□□□ -0.01
VPS13C-208ENST00000559119 EFCAB3Q8N7B9 438 aa14.97□□□□□ -0.01
VPS13C-208ENST00000559119 ZFP91Q96JP5 570 aaPredicted RBP14.97□□□□□ -0.01
VPS13C-208ENST00000559119 TAOK2Q9UL54 1235 aa14.96□□□□□ -0.01
VPS13C-208ENST00000559119 G3V3G9 751 aa14.94□□□□□ -0.02
VPS13C-208ENST00000559119 DPY19L2Q6NUT2 758 aa14.94□□□□□ -0.02
VPS13C-208ENST00000559119 LCE2DQ5TA82 110 aaPredicted RBP14.9□□□□□ -0.02
VPS13C-208ENST00000559119 PKD2Q13563 968 aa14.88□□□□□ -0.03
VPS13C-208ENST00000559119 BOLA1Q9Y3E2 137 aa14.88□□□□□ -0.03
VPS13C-208ENST00000559119 SOX12O15370 315 aa14.86□□□□□ -0.03
VPS13C-208ENST00000559119 SNPHO15079 494 aa14.85□□□□□ -0.03
VPS13C-208ENST00000559119 BCL11BQ9C0K0 894 aaPredicted RBP14.83□□□□□ -0.04
VPS13C-208ENST00000559119 STK24Q9Y6E0 443 aa14.82□□□□□ -0.04
VPS13C-208ENST00000559119 RGL2O15211 777 aa14.8□□□□□ -0.04
VPS13C-208ENST00000559119 ST18O60284 1047 aa14.8□□□□□ -0.04
VPS13C-208ENST00000559119 STK25O00506 426 aa14.79□□□□□ -0.04
VPS13C-208ENST00000559119 PHF8Q9UPP1 1060 aa14.78□□□□□ -0.04
VPS13C-208ENST00000559119 PCDH10Q9P2E7 1040 aa14.76□□□□□ -0.05
VPS13C-208ENST00000559119 NLRP6P59044 892 aa14.73□□□□□ -0.05
VPS13C-208ENST00000559119 TMEM121BQ9BXQ6 578 aaPredicted RBP14.73□□□□□ -0.05
VPS13C-208ENST00000559119 PLSCR2Q9NRY7 297 aa14.72□□□□□ -0.05
VPS13C-208ENST00000559119 MS4A4AQ96JQ5 239 aa14.71□□□□□ -0.05
VPS13C-208ENST00000559119 MICALL2Q8IY33 904 aa14.69□□□□□ -0.06
VPS13C-208ENST00000559119 FBXO22Q8NEZ5 403 aa14.64□□□□□ -0.07
VPS13C-208ENST00000559119 MFRPQ9BY79 579 aa14.63□□□□□ -0.07
VPS13C-208ENST00000559119 CDAN1Q8IWY9 1227 aa14.59□□□□□ -0.07
VPS13C-208ENST00000559119 MARVELD3Q96A59 401 aa14.59□□□□□ -0.07
VPS13C-208ENST00000559119 ZNF710Q8N1W2 664 aa14.55□□□□□ -0.08
VPS13C-208ENST00000559119 HOXB3P14651 431 aaPredicted RBP14.54□□□□□ -0.08
VPS13C-208ENST00000559119 EMP3P54852 163 aa14.54□□□□□ -0.08
VPS13C-208ENST00000559119 DOK7Q18PE1 504 aa14.54□□□□□ -0.08
VPS13C-208ENST00000559119 TMEM92Q6UXU6 159 aa14.54□□□□□ -0.08
VPS13C-208ENST00000559119 RIMBP2O15034 1052 aa14.5□□□□□ -0.09
VPS13C-208ENST00000559119 HS6ST3Q8IZP7 471 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms