RNA–Protein interactions for RNA: ENST00000558861.1

LRRC28-209, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 744 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-209ENST00000558861 RNF25Q96BH1 459 aaPredicted RBP13.31□□□□□ -0.28
LRRC28-209ENST00000558861 FARP1Q9Y4F1 1045 aaPredicted RBP13.3□□□□□ -0.28
LRRC28-209ENST00000558861 PLCB2Q00722 1185 aa13.29□□□□□ -0.28
LRRC28-209ENST00000558861 PIP4P2Q8N4L2 257 aa13.25□□□□□ -0.29
LRRC28-209ENST00000558861 CHGAP10645 457 aaKnown RBP13.22□□□□□ -0.29
LRRC28-209ENST00000558861 BBXQ8WY36 941 aaPredicted RBP13.21□□□□□ -0.29
LRRC28-209ENST00000558861 TSPYL2Q9H2G4 693 aaPredicted RBP13.21□□□□□ -0.29
LRRC28-209ENST00000558861 PYGBP11216 843 aa13.2□□□□□ -0.3
LRRC28-209ENST00000558861 RIOK3O14730 519 aaKnown RBP13.19□□□□□ -0.3
LRRC28-209ENST00000558861 CHRM1P11229 460 aaPredicted RBP13.18□□□□□ -0.3
LRRC28-209ENST00000558861 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.15□□□□□ -0.3
LRRC28-209ENST00000558861 POTEHQ6S545 545 aa13.14□□□□□ -0.31
LRRC28-209ENST00000558861 HS6ST3Q8IZP7 471 aa13.14□□□□□ -0.31
LRRC28-209ENST00000558861 HAP1P54257 671 aaPredicted RBP13.11□□□□□ -0.31
LRRC28-209ENST00000558861 PAXIP1Q6ZW49 1069 aaPredicted RBP13.1□□□□□ -0.31
LRRC28-209ENST00000558861 VGFO15240 615 aaPredicted RBP13.09□□□□□ -0.31
LRRC28-209ENST00000558861 CFAP44Q96MT7 982 aa13.08□□□□□ -0.32
LRRC28-209ENST00000558861 CCDC61Q9Y6R9 512 aa13.08□□□□□ -0.32
LRRC28-209ENST00000558861 TAOK2Q9UL54 1235 aa13.07□□□□□ -0.32
LRRC28-209ENST00000558861 STK25O00506 426 aa13.05□□□□□ -0.32
LRRC28-209ENST00000558861 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.04□□□□□ -0.32
LRRC28-209ENST00000558861 ZFP91Q96JP5 570 aaPredicted RBP13.04□□□□□ -0.32
LRRC28-209ENST00000558861 PAK3O75914 559 aaPredicted RBP13.03□□□□□ -0.32
LRRC28-209ENST00000558861 SPRYD3Q8NCJ5 442 aa13.01□□□□□ -0.33
LRRC28-209ENST00000558861 DNAJC5Q9H3Z4 198 aa13□□□□□ -0.33
LRRC28-209ENST00000558861 NKX1-1Q15270 411 aaPredicted RBP12.99□□□□□ -0.33
LRRC28-209ENST00000558861 SGIP1Q9BQI5 828 aa12.99□□□□□ -0.33
LRRC28-209ENST00000558861 BCL11BQ9C0K0 894 aaPredicted RBP12.99□□□□□ -0.33
LRRC28-209ENST00000558861 PCDHB8Q9UN66 801 aa12.99□□□□□ -0.33
LRRC28-209ENST00000558861 PCDHB13Q9Y5F0 798 aa12.99□□□□□ -0.33
LRRC28-209ENST00000558861 ZNF467Q7Z7K2 595 aaPredicted RBP12.98□□□□□ -0.33
LRRC28-209ENST00000558861 CD44P16070 742 aaKnown RBP12.97□□□□□ -0.33
LRRC28-209ENST00000558861 STK24Q9Y6E0 443 aa12.97□□□□□ -0.33
LRRC28-209ENST00000558861 ZRANB1Q9UGI0 708 aa12.95□□□□□ -0.34
LRRC28-209ENST00000558861 MAP3K13O43283 966 aa12.92□□□□□ -0.34
LRRC28-209ENST00000558861 ZNF579Q8NAF0 562 aaKnown RBP12.92□□□□□ -0.34
LRRC28-209ENST00000558861 KIF12Q96FN5 646 aa12.92□□□□□ -0.34
LRRC28-209ENST00000558861 PDAP1Q13442 181 aaKnown RBP12.91□□□□□ -0.34
LRRC28-209ENST00000558861 IFNL1Q8IU54 200 aa12.91□□□□□ -0.34
LRRC28-209ENST00000558861 PHF12Q96QT6 1004 aa12.9□□□□□ -0.34
LRRC28-209ENST00000558861 TSHZ2Q9NRE2 1034 aa12.89□□□□□ -0.35
LRRC28-209ENST00000558861 GTPBP6O43824 516 aaPredicted RBP12.87□□□□□ -0.35
LRRC28-209ENST00000558861 PSEN1P49768 467 aa12.87□□□□□ -0.35
LRRC28-209ENST00000558861 VSIG10Q8N0Z9 540 aa12.86□□□□□ -0.35
LRRC28-209ENST00000558861 C19orf67A6NJJ6 358 aa12.85□□□□□ -0.35
LRRC28-209ENST00000558861 KDM2AQ9Y2K7 1162 aa12.84□□□□□ -0.35
LRRC28-209ENST00000558861 MS4A3Q96HJ5 214 aa12.75□□□□□ -0.37
LRRC28-209ENST00000558861 RYDENQ9NUL5 291 aaKnown RBP12.73□□□□□ -0.37
LRRC28-209ENST00000558861 CABP2Q9NPB3 220 aa12.72□□□□□ -0.37
LRRC28-209ENST00000558861 TRPC6Q9Y210 931 aa12.72□□□□□ -0.37
LRRC28-209ENST00000558861 HAX1O00165 279 aa12.7□□□□□ -0.38
LRRC28-209ENST00000558861 MFRPQ9BY79 579 aa12.7□□□□□ -0.38
LRRC28-209ENST00000558861 EFCAB3Q8N7B9 438 aa12.69□□□□□ -0.38
LRRC28-209ENST00000558861 EVX2Q03828 476 aa12.68□□□□□ -0.38
LRRC28-209ENST00000558861 TMEM106CQ9BVX2 250 aa12.66□□□□□ -0.38
LRRC28-209ENST00000558861 PHF8Q9UPP1 1060 aa12.62□□□□□ -0.39
LRRC28-209ENST00000558861 GALR2O43603 387 aaPredicted RBP12.61□□□□□ -0.39
LRRC28-209ENST00000558861 FBXO22Q8NEZ5 403 aa12.61□□□□□ -0.39
LRRC28-209ENST00000558861 SOX12O15370 315 aa12.59□□□□□ -0.39
LRRC28-209ENST00000558861 NLRP6P59044 892 aa12.58□□□□□ -0.4
LRRC28-209ENST00000558861 TTLL13PA6NNM8 815 aa12.57□□□□□ -0.4
LRRC28-209ENST00000558861 PPP1R37O75864 691 aa12.57□□□□□ -0.4
LRRC28-209ENST00000558861 TIE1P35590 1138 aa12.57□□□□□ -0.4
LRRC28-209ENST00000558861 GOLGA2Q08379 1002 aa12.57□□□□□ -0.4
LRRC28-209ENST00000558861 BCANQ96GW7 911 aa12.56□□□□□ -0.4
LRRC28-209ENST00000558861 BMP2KQ9NSY1 1161 aaPredicted RBP12.56□□□□□ -0.4
LRRC28-209ENST00000558861 CADPS2Q86UW7 1296 aa12.55□□□□□ -0.4
LRRC28-209ENST00000558861 CCDC180Q9P1Z9 1646 aa12.54□□□□□ -0.4
LRRC28-209ENST00000558861 MS4A4AQ96JQ5 239 aa12.53□□□□□ -0.4
LRRC28-209ENST00000558861 MKRN3Q13064 507 aaKnown RBP12.5□□□□□ -0.41
LRRC28-209ENST00000558861 TRIM35Q9UPQ4 493 aa12.48□□□□□ -0.41
LRRC28-209ENST00000558861 CLCN6P51797 869 aa12.47□□□□□ -0.41
LRRC28-209ENST00000558861 ATN1P54259 1190 aaPredicted RBP12.43□□□□□ -0.42
LRRC28-209ENST00000558861 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.42□□□□□ -0.421e-7■■■□□ 18.9
LRRC28-209ENST00000558861 GABBR2O75899 941 aa12.41□□□□□ -0.42
LRRC28-209ENST00000558861 ATMINO43313 823 aaPredicted RBP12.4□□□□□ -0.42
LRRC28-209ENST00000558861 ILDR1Q86SU0 546 aaPredicted RBP12.4□□□□□ -0.42
LRRC28-209ENST00000558861 ASTLQ6HA08 431 aaPredicted RBP12.38□□□□□ -0.43
LRRC28-209ENST00000558861 NBR1Q14596 966 aa12.36□□□□□ -0.43
LRRC28-209ENST00000558861 WDR70Q9NW82 654 aa12.36□□□□□ -0.43
LRRC28-209ENST00000558861 DPY19L2Q6NUT2 758 aa12.34□□□□□ -0.43
LRRC28-209ENST00000558861 NCKAP5LQ9HCH0 1330 aa12.34□□□□□ -0.43
LRRC28-209ENST00000558861 PDCD7Q8N8D1 485 aaKnown RBP12.33□□□□□ -0.44
LRRC28-209ENST00000558861 KCNV2Q8TDN2 545 aa12.32□□□□□ -0.44
LRRC28-209ENST00000558861 IRX5P78411 483 aaPredicted RBP12.31□□□□□ -0.44
LRRC28-209ENST00000558861 P3H3Q8IVL6 736 aa12.3□□□□□ -0.44
LRRC28-209ENST00000558861 IER5LQ5T953 404 aa12.29□□□□□ -0.44
LRRC28-209ENST00000558861 PELP1Q8IZL8 1130 aaKnown RBP12.28□□□□□ -0.44
LRRC28-209ENST00000558861 DCBLD2Q96PD2 775 aa12.28□□□□□ -0.44
LRRC28-209ENST00000558861 CRISPLD2Q9H0B8 497 aa12.28□□□□□ -0.44
LRRC28-209ENST00000558861 LARP6Q9BRS8 491 aaKnown RBP12.27□□□□□ -0.45
LRRC28-209ENST00000558861 OCEL1Q9H607 264 aa12.26□□□□□ -0.45
LRRC28-209ENST00000558861 MICALL2Q8IY33 904 aa12.25□□□□□ -0.45
LRRC28-209ENST00000558861 PRKCSHP14314 528 aaPredicted RBP12.24□□□□□ -0.45
LRRC28-209ENST00000558861 PDE4AP27815 886 aa12.24□□□□□ -0.45
LRRC28-209ENST00000558861 MFSD10Q14728 455 aa12.23□□□□□ -0.45
LRRC28-209ENST00000558861 PLCG2P16885 1265 aa12.22□□□□□ -0.45
LRRC28-209ENST00000558861 E2F4Q16254 413 aa12.21□□□□□ -0.45
LRRC28-209ENST00000558861 DDX27Q96GQ7 796 aaKnown RBP12.21□□□□□ -0.45
LRRC28-209ENST00000558861 SP7Q8TDD2 431 aaPredicted RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms