RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 CCDC61Q9Y6R9 512 aa12.84□□□□□ -0.35
SCFD1-221ENST00000556534 PAK3O75914 559 aaPredicted RBP12.83□□□□□ -0.36
SCFD1-221ENST00000556534 ECM2O94769 699 aaPredicted RBP12.82□□□□□ -0.36
SCFD1-221ENST00000556534 TRIM41Q8WV44 630 aa12.82□□□□□ -0.36
SCFD1-221ENST00000556534 ZRANB1Q9UGI0 708 aa12.8□□□□□ -0.36
SCFD1-221ENST00000556534 HAX1O00165 279 aa12.79□□□□□ -0.36
SCFD1-221ENST00000556534 PYGBP11216 843 aa12.76□□□□□ -0.37
SCFD1-221ENST00000556534 CHRM1P11229 460 aaPredicted RBP12.76□□□□□ -0.37
SCFD1-221ENST00000556534 EVX2Q03828 476 aa12.76□□□□□ -0.37
SCFD1-221ENST00000556534 ZNF579Q8NAF0 562 aaKnown RBP12.76□□□□□ -0.37
SCFD1-221ENST00000556534 RGL2O15211 777 aa12.74□□□□□ -0.37
SCFD1-221ENST00000556534 PHF12Q96QT6 1004 aa12.74□□□□□ -0.37
SCFD1-221ENST00000556534 RNF25Q96BH1 459 aaPredicted RBP12.73□□□□□ -0.37
SCFD1-221ENST00000556534 KIF12Q96FN5 646 aa12.69□□□□□ -0.38
SCFD1-221ENST00000556534 MAP3K13O43283 966 aa12.66□□□□□ -0.38
SCFD1-221ENST00000556534 RIOK3O14730 519 aaKnown RBP12.63□□□□□ -0.39
SCFD1-221ENST00000556534 SGIP1Q9BQI5 828 aa12.62□□□□□ -0.39
SCFD1-221ENST00000556534 PCDHB13Q9Y5F0 798 aa12.62□□□□□ -0.39
SCFD1-221ENST00000556534 ZNF467Q7Z7K2 595 aaPredicted RBP12.6□□□□□ -0.39
SCFD1-221ENST00000556534 IFNL1Q8IU54 200 aa12.6□□□□□ -0.39
SCFD1-221ENST00000556534 MS4A3Q96HJ5 214 aa12.59□□□□□ -0.39
SCFD1-221ENST00000556534 PCDHB8Q9UN66 801 aa12.59□□□□□ -0.39
SCFD1-221ENST00000556534 DCAF8L2P0C7V8 631 aa12.57□□□□□ -0.4
SCFD1-221ENST00000556534 VGFO15240 615 aaPredicted RBP12.55□□□□□ -0.4
SCFD1-221ENST00000556534 GALR2O43603 387 aaPredicted RBP12.53□□□□□ -0.4
SCFD1-221ENST00000556534 CLCN6P51797 869 aa12.52□□□□□ -0.41
SCFD1-221ENST00000556534 PDAP1Q13442 181 aaKnown RBP12.5□□□□□ -0.41
SCFD1-221ENST00000556534 TAOK2Q9UL54 1235 aa12.5□□□□□ -0.41
SCFD1-221ENST00000556534 TRPC6Q9Y210 931 aa12.5□□□□□ -0.41
SCFD1-221ENST00000556534 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.49□□□□□ -0.41
SCFD1-221ENST00000556534 GABBR2O75899 941 aa12.49□□□□□ -0.41
SCFD1-221ENST00000556534 SP7Q8TDD2 431 aaPredicted RBP12.49□□□□□ -0.41
SCFD1-221ENST00000556534 ZFP91Q96JP5 570 aaPredicted RBP12.49□□□□□ -0.41
SCFD1-221ENST00000556534 PSEN1P49768 467 aa12.47□□□□□ -0.41
SCFD1-221ENST00000556534 HS6ST3Q8IZP7 471 aa12.47□□□□□ -0.41
SCFD1-221ENST00000556534 CHGAP10645 457 aaKnown RBP12.45□□□□□ -0.42
SCFD1-221ENST00000556534 STK25O00506 426 aa12.43□□□□□ -0.42
SCFD1-221ENST00000556534 BCL11BQ9C0K0 894 aaPredicted RBP12.42□□□□□ -0.42
SCFD1-221ENST00000556534 TIE1P35590 1138 aa12.41□□□□□ -0.42
SCFD1-221ENST00000556534 BMP2KQ9NSY1 1161 aaPredicted RBP12.4□□□□□ -0.42
SCFD1-221ENST00000556534 TMEM106CQ9BVX2 250 aa12.38□□□□□ -0.43
SCFD1-221ENST00000556534 STK24Q9Y6E0 443 aa12.38□□□□□ -0.43
SCFD1-221ENST00000556534 TTLL13PA6NNM8 815 aa12.37□□□□□ -0.43
SCFD1-221ENST00000556534 DNAJC5Q9H3Z4 198 aa12.37□□□□□ -0.43
SCFD1-221ENST00000556534 ASTLQ6HA08 431 aaPredicted RBP12.33□□□□□ -0.44
SCFD1-221ENST00000556534 BBXQ8WY36 941 aaPredicted RBP12.32□□□□□ -0.44
SCFD1-221ENST00000556534 ATMINO43313 823 aaPredicted RBP12.31□□□□□ -0.44
SCFD1-221ENST00000556534 NKX1-1Q15270 411 aaPredicted RBP12.31□□□□□ -0.44
SCFD1-221ENST00000556534 CABP2Q9NPB3 220 aa12.31□□□□□ -0.44
SCFD1-221ENST00000556534 ATN1P54259 1190 aaPredicted RBP12.3□□□□□ -0.44
SCFD1-221ENST00000556534 DCBLD2Q96PD2 775 aa12.28□□□□□ -0.44
SCFD1-221ENST00000556534 TRIM35Q9UPQ4 493 aa12.28□□□□□ -0.44
SCFD1-221ENST00000556534 POTEIP0CG38 1075 aa12.27□□□□□ -0.45
SCFD1-221ENST00000556534 EFCAB3Q8N7B9 438 aa12.26□□□□□ -0.45
SCFD1-221ENST00000556534 GOLGA2Q08379 1002 aa12.22□□□□□ -0.45
SCFD1-221ENST00000556534 PELP1Q8IZL8 1130 aaKnown RBP12.22□□□□□ -0.45
SCFD1-221ENST00000556534 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.22□□□□□ -0.45
SCFD1-221ENST00000556534 MFRPQ9BY79 579 aa12.21□□□□□ -0.45
SCFD1-221ENST00000556534 SOX12O15370 315 aa12.18□□□□□ -0.46
SCFD1-221ENST00000556534 MKRN3Q13064 507 aaKnown RBP12.18□□□□□ -0.46
SCFD1-221ENST00000556534 GTPBP6O43824 516 aaPredicted RBP12.17□□□□□ -0.46
SCFD1-221ENST00000556534 FBXO22Q8NEZ5 403 aa12.17□□□□□ -0.46
SCFD1-221ENST00000556534 PHF8Q9UPP1 1060 aa12.17□□□□□ -0.46
SCFD1-221ENST00000556534 PLCB2Q00722 1185 aa12.16□□□□□ -0.46
SCFD1-221ENST00000556534 IER5LQ5T953 404 aa12.16□□□□□ -0.46
SCFD1-221ENST00000556534 ILDR1Q86SU0 546 aaPredicted RBP12.16□□□□□ -0.46
SCFD1-221ENST00000556534 PAXIP1Q6ZW49 1069 aaPredicted RBP12.14□□□□□ -0.47
SCFD1-221ENST00000556534 NLRP6P59044 892 aa12.13□□□□□ -0.47
SCFD1-221ENST00000556534 IRX5P78411 483 aaPredicted RBP12.13□□□□□ -0.47
SCFD1-221ENST00000556534 SPRYD3Q8NCJ5 442 aa12.13□□□□□ -0.47
SCFD1-221ENST00000556534 MS4A4AQ96JQ5 239 aa12.13□□□□□ -0.47
SCFD1-221ENST00000556534 SLC39A7Q92504 469 aa12.12□□□□□ -0.47
SCFD1-221ENST00000556534 CFAP44Q96MT7 982 aa12.11□□□□□ -0.47
SCFD1-221ENST00000556534 RYDENQ9NUL5 291 aaKnown RBP12.11□□□□□ -0.47
SCFD1-221ENST00000556534 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.11□□□□□ -0.473e-10■■■□□ 16.9
SCFD1-221ENST00000556534 PDCD7Q8N8D1 485 aaKnown RBP12.1□□□□□ -0.47
SCFD1-221ENST00000556534 METRNQ9UJH8 293 aa12.09□□□□□ -0.47
SCFD1-221ENST00000556534 POTEFA5A3E0 1075 aa12.07□□□□□ -0.48
SCFD1-221ENST00000556534 C7P10643 843 aa12.07□□□□□ -0.48
SCFD1-221ENST00000556534 COLQQ9Y215 455 aaPredicted RBP12.07□□□□□ -0.48
SCFD1-221ENST00000556534 OCEL1Q9H607 264 aa12.05□□□□□ -0.48
SCFD1-221ENST00000556534 PLCG2P16885 1265 aa12.04□□□□□ -0.48
SCFD1-221ENST00000556534 PPP1R37O75864 691 aa12.03□□□□□ -0.48
SCFD1-221ENST00000556534 SEC24BO95487 1268 aa12.01□□□□□ -0.49
SCFD1-221ENST00000556534 DPY19L2Q6NUT2 758 aa12.01□□□□□ -0.49
SCFD1-221ENST00000556534 HAP1P54257 671 aaPredicted RBP11.95□□□□□ -0.5
SCFD1-221ENST00000556534 TSHZ2Q9NRE2 1034 aa11.94□□□□□ -0.5
SCFD1-221ENST00000556534 SLC24A1O60721 1099 aa11.92□□□□□ -0.5
SCFD1-221ENST00000556534 MICALL2Q8IY33 904 aa11.92□□□□□ -0.5
SCFD1-221ENST00000556534 TMEM121BQ9BXQ6 578 aaPredicted RBP11.91□□□□□ -0.5
SCFD1-221ENST00000556534 BOLA1Q9Y3E2 137 aa11.9□□□□□ -0.5
SCFD1-221ENST00000556534 CADPS2Q86UW7 1296 aa11.89□□□□□ -0.51
SCFD1-221ENST00000556534 L3MBTL3Q96JM7 780 aaPredicted RBP11.89□□□□□ -0.51
SCFD1-221ENST00000556534 POTEB2H3BUK9 544 aa11.88□□□□□ -0.51
SCFD1-221ENST00000556534 POTEJP0CG39 1038 aa11.85□□□□□ -0.51
SCFD1-221ENST00000556534 G3V3G9 751 aa11.83□□□□□ -0.52
SCFD1-221ENST00000556534 NCKAP5LQ9HCH0 1330 aa11.8□□□□□ -0.52
SCFD1-221ENST00000556534 CRISPLD2Q9H0B8 497 aa11.78□□□□□ -0.52
SCFD1-221ENST00000556534 TMEM92Q6UXU6 159 aa11.77□□□□□ -0.53
SCFD1-221ENST00000556534 C3orf67Q6ZVT6 689 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 180.5 ms