RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 SPOCK2Q92563 424 aa12.42□□□□□ -0.42
SRP54-211ENST00000556445 PHF12Q96QT6 1004 aa12.42□□□□□ -0.42
SRP54-211ENST00000556445 FAM212AQ96EL1 285 aa12.39□□□□□ -0.43
SRP54-211ENST00000556445 CLCN6P51797 869 aa12.35□□□□□ -0.43
SRP54-211ENST00000556445 DCAF8Q5TAQ9 597 aa12.34□□□□□ -0.43
SRP54-211ENST00000556445 KIF12Q96FN5 646 aa12.32□□□□□ -0.44
SRP54-211ENST00000556445 GALR2O43603 387 aaPredicted RBP12.3□□□□□ -0.44
SRP54-211ENST00000556445 GSE1Q14687 1217 aa12.3□□□□□ -0.44
SRP54-211ENST00000556445 MS4A3Q96HJ5 214 aa12.27□□□□□ -0.45
SRP54-211ENST00000556445 MAP3K13O43283 966 aa12.26□□□□□ -0.45
SRP54-211ENST00000556445 CIZ1Q9ULV3 898 aaPredicted RBP12.24□□□□□ -0.45
SRP54-211ENST00000556445 PYGBP11216 843 aa12.23□□□□□ -0.45
SRP54-211ENST00000556445 SGIP1Q9BQI5 828 aa12.2□□□□□ -0.46
SRP54-211ENST00000556445 POTEIP0CG38 1075 aa12.19□□□□□ -0.46
SRP54-211ENST00000556445 CHRM1P11229 460 aaPredicted RBP12.19□□□□□ -0.46
SRP54-211ENST00000556445 PCDHB13Q9Y5F0 798 aa12.19□□□□□ -0.46
SRP54-211ENST00000556445 IFNL1Q8IU54 200 aa12.16□□□□□ -0.46
SRP54-211ENST00000556445 TRPC6Q9Y210 931 aa12.16□□□□□ -0.46
SRP54-211ENST00000556445 DCBLD2Q96PD2 775 aa12.14□□□□□ -0.47
SRP54-211ENST00000556445 TRIM41Q8WV44 630 aa12.12□□□□□ -0.47
SRP54-211ENST00000556445 PCDHB8Q9UN66 801 aa12.1□□□□□ -0.47
SRP54-211ENST00000556445 PKD2Q13563 968 aa12.08□□□□□ -0.48
SRP54-211ENST00000556445 ASTLQ6HA08 431 aaPredicted RBP12.08□□□□□ -0.48
SRP54-211ENST00000556445 BMP2KQ9NSY1 1161 aaPredicted RBP12.08□□□□□ -0.48
SRP54-211ENST00000556445 ATMINO43313 823 aaPredicted RBP12.07□□□□□ -0.48
SRP54-211ENST00000556445 TIE1P35590 1138 aa12.07□□□□□ -0.48
SRP54-211ENST00000556445 ZNF467Q7Z7K2 595 aaPredicted RBP12.06□□□□□ -0.48
SRP54-211ENST00000556445 PELP1Q8IZL8 1130 aaKnown RBP12.04□□□□□ -0.48
SRP54-211ENST00000556445 TTLL13PA6NNM8 815 aa12.03□□□□□ -0.48
SRP54-211ENST00000556445 ATN1P54259 1190 aaPredicted RBP12.02□□□□□ -0.49
SRP54-211ENST00000556445 RNF25Q96BH1 459 aaPredicted RBP12.02□□□□□ -0.49
SRP54-211ENST00000556445 ECM2O94769 699 aaPredicted RBP11.99□□□□□ -0.49
SRP54-211ENST00000556445 TMEM106CQ9BVX2 250 aa11.99□□□□□ -0.49
SRP54-211ENST00000556445 RIOK3O14730 519 aaKnown RBP11.95□□□□□ -0.5
SRP54-211ENST00000556445 PSEN1P49768 467 aa11.95□□□□□ -0.5
SRP54-211ENST00000556445 PDAP1Q13442 181 aaKnown RBP11.95□□□□□ -0.5
SRP54-211ENST00000556445 TRIM35Q9UPQ4 493 aa11.93□□□□□ -0.5
SRP54-211ENST00000556445 RGL2O15211 777 aa11.92□□□□□ -0.5
SRP54-211ENST00000556445 SLC39A7Q92504 469 aa11.91□□□□□ -0.5
SRP54-211ENST00000556445 C7P10643 843 aa11.89□□□□□ -0.51
SRP54-211ENST00000556445 METRNQ9UJH8 293 aa11.89□□□□□ -0.51
SRP54-211ENST00000556445 VGFO15240 615 aaPredicted RBP11.87□□□□□ -0.51
SRP54-211ENST00000556445 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.85□□□□□ -0.51
SRP54-211ENST00000556445 IER5LQ5T953 404 aa11.85□□□□□ -0.51
SRP54-211ENST00000556445 ZFP91Q96JP5 570 aaPredicted RBP11.85□□□□□ -0.51
SRP54-211ENST00000556445 POTEFA5A3E0 1075 aa11.84□□□□□ -0.51
SRP54-211ENST00000556445 COLQQ9Y215 455 aaPredicted RBP11.81□□□□□ -0.52
SRP54-211ENST00000556445 POTEB2H3BUK9 544 aa11.8□□□□□ -0.52
SRP54-211ENST00000556445 CABP2Q9NPB3 220 aa11.8□□□□□ -0.52
SRP54-211ENST00000556445 IRX5P78411 483 aaPredicted RBP11.79□□□□□ -0.52
SRP54-211ENST00000556445 LHX8Q68G74 356 aa11.79□□□□□ -0.52
SRP54-211ENST00000556445 TAOK2Q9UL54 1235 aa11.79□□□□□ -0.52
SRP54-211ENST00000556445 GOLGA2Q08379 1002 aa11.76□□□□□ -0.53
SRP54-211ENST00000556445 AMER1Q5JTC6 1135 aaPredicted RBP11.76□□□□□ -0.53
SRP54-211ENST00000556445 RTN4Q9NQC3 1192 aaKnown RBP11.76□□□□□ -0.53
SRP54-211ENST00000556445 SEC24BO95487 1268 aa11.75□□□□□ -0.53
SRP54-211ENST00000556445 MKRN3Q13064 507 aaKnown RBP11.75□□□□□ -0.53
SRP54-211ENST00000556445 BCL11BQ9C0K0 894 aaPredicted RBP11.75□□□□□ -0.53
SRP54-211ENST00000556445 POTEJP0CG39 1038 aa11.73□□□□□ -0.53
SRP54-211ENST00000556445 EFCAB3Q8N7B9 438 aa11.73□□□□□ -0.53
SRP54-211ENST00000556445 STK25O00506 426 aa11.72□□□□□ -0.53
SRP54-211ENST00000556445 PLCG2P16885 1265 aa11.72□□□□□ -0.53
SRP54-211ENST00000556445 ILDR1Q86SU0 546 aaPredicted RBP11.72□□□□□ -0.53
SRP54-211ENST00000556445 OCEL1Q9H607 264 aa11.72□□□□□ -0.53
SRP54-211ENST00000556445 STK24Q9Y6E0 443 aa11.71□□□□□ -0.53
SRP54-211ENST00000556445 PDCD7Q8N8D1 485 aaKnown RBP11.7□□□□□ -0.54
SRP54-211ENST00000556445 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.69□□□□□ -0.542e-12■■■■□ 21
SRP54-211ENST00000556445 HS6ST3Q8IZP7 471 aa11.66□□□□□ -0.54
SRP54-211ENST00000556445 SOX12O15370 315 aa11.64□□□□□ -0.55
SRP54-211ENST00000556445 OTUD5Q96G74 571 aa11.64□□□□□ -0.55
SRP54-211ENST00000556445 CHGAP10645 457 aaKnown RBP11.62□□□□□ -0.55
SRP54-211ENST00000556445 DPY19L2Q6NUT2 758 aa11.61□□□□□ -0.55
SRP54-211ENST00000556445 PHF8Q9UPP1 1060 aa11.61□□□□□ -0.55
SRP54-211ENST00000556445 MS4A4AQ96JQ5 239 aa11.59□□□□□ -0.55
SRP54-211ENST00000556445 MFRPQ9BY79 579 aa11.59□□□□□ -0.55
SRP54-211ENST00000556445 MAMSTRQ6ZN01 415 aa11.58□□□□□ -0.56
SRP54-211ENST00000556445 FBXO22Q8NEZ5 403 aa11.58□□□□□ -0.56
SRP54-211ENST00000556445 DCAF8L2P0C7V8 631 aa11.57□□□□□ -0.56
SRP54-211ENST00000556445 DNAJC5Q9H3Z4 198 aa11.57□□□□□ -0.56
SRP54-211ENST00000556445 NLRP6P59044 892 aa11.55□□□□□ -0.56
SRP54-211ENST00000556445 L3MBTL3Q96JM7 780 aaPredicted RBP11.54□□□□□ -0.56
SRP54-211ENST00000556445 SCUBE2Q9NQ36 999 aa11.54□□□□□ -0.56
SRP54-211ENST00000556445 NKX1-1Q15270 411 aaPredicted RBP11.53□□□□□ -0.56
SRP54-211ENST00000556445 BOLA1Q9Y3E2 137 aa11.5□□□□□ -0.57
SRP54-211ENST00000556445 TMEM121BQ9BXQ6 578 aaPredicted RBP11.49□□□□□ -0.57
SRP54-211ENST00000556445 MICALL2Q8IY33 904 aa11.45□□□□□ -0.58
SRP54-211ENST00000556445 C3orf67Q6ZVT6 689 aa11.44□□□□□ -0.58
SRP54-211ENST00000556445 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.44□□□□□ -0.58
SRP54-211ENST00000556445 PPP1R37O75864 691 aa11.43□□□□□ -0.58
SRP54-211ENST00000556445 G3V3G9 751 aa11.42□□□□□ -0.58
SRP54-211ENST00000556445 SLAIN1Q8ND83 568 aa11.42□□□□□ -0.58
SRP54-211ENST00000556445 GTPBP6O43824 516 aaPredicted RBP11.38□□□□□ -0.59
SRP54-211ENST00000556445 BBXQ8WY36 941 aaPredicted RBP11.36□□□□□ -0.59
SRP54-211ENST00000556445 TMEM92Q6UXU6 159 aa11.35□□□□□ -0.59
SRP54-211ENST00000556445 RYDENQ9NUL5 291 aaKnown RBP11.35□□□□□ -0.59
SRP54-211ENST00000556445 LCE2DQ5TA82 110 aaPredicted RBP11.26□□□□□ -0.61
SRP54-211ENST00000556445 KIF3CO14782 793 aa11.25□□□□□ -0.61
SRP54-211ENST00000556445 C2orf72A6NCS6 295 aa11.22□□□□□ -0.61
SRP54-211ENST00000556445 FAM163AQ96GL9 167 aaPredicted RBP11.22□□□□□ -0.61
SRP54-211ENST00000556445 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 145.7 ms