RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 LHX8Q68G74 356 aa13.45□□□□□ -0.26
SCFD1-219ENST00000556413 ZBTB47Q9UFB7 747 aaPredicted RBP13.45□□□□□ -0.26
SCFD1-219ENST00000556413 MS4A3Q96HJ5 214 aa13.44□□□□□ -0.26
SCFD1-219ENST00000556413 NUBP1P53384 320 aa13.4□□□□□ -0.26
SCFD1-219ENST00000556413 KIF12Q96FN5 646 aa13.39□□□□□ -0.27
SCFD1-219ENST00000556413 MAP3K13O43283 966 aa13.32□□□□□ -0.28
SCFD1-219ENST00000556413 PELP1Q8IZL8 1130 aaKnown RBP13.32□□□□□ -0.28
SCFD1-219ENST00000556413 VASPP50552 380 aaPredicted RBP13.31□□□□□ -0.28
SCFD1-219ENST00000556413 ASTLQ6HA08 431 aaPredicted RBP13.31□□□□□ -0.28
SCFD1-219ENST00000556413 ATMINO43313 823 aaPredicted RBP13.29□□□□□ -0.28
SCFD1-219ENST00000556413 FAM212AQ96EL1 285 aa13.28□□□□□ -0.28
SCFD1-219ENST00000556413 TRPC6Q9Y210 931 aa13.26□□□□□ -0.29
SCFD1-219ENST00000556413 BMP2KQ9NSY1 1161 aaPredicted RBP13.22□□□□□ -0.29
SCFD1-219ENST00000556413 ATN1P54259 1190 aaPredicted RBP13.21□□□□□ -0.29
SCFD1-219ENST00000556413 KLHL34Q8N239 644 aa13.21□□□□□ -0.29
SCFD1-219ENST00000556413 SGIP1Q9BQI5 828 aa13.21□□□□□ -0.29
SCFD1-219ENST00000556413 POTEB2H3BUK9 544 aa13.2□□□□□ -0.3
SCFD1-219ENST00000556413 DCAF8Q5TAQ9 597 aa13.2□□□□□ -0.3
SCFD1-219ENST00000556413 PCDHB13Q9Y5F0 798 aa13.2□□□□□ -0.3
SCFD1-219ENST00000556413 TIE1P35590 1138 aa13.18□□□□□ -0.3
SCFD1-219ENST00000556413 SLC39A7Q92504 469 aa13.18□□□□□ -0.3
SCFD1-219ENST00000556413 METRNQ9UJH8 293 aa13.18□□□□□ -0.3
SCFD1-219ENST00000556413 C7P10643 843 aa13.17□□□□□ -0.3
SCFD1-219ENST00000556413 IFNL1Q8IU54 200 aa13.15□□□□□ -0.3
SCFD1-219ENST00000556413 TTLL13PA6NNM8 815 aa13.13□□□□□ -0.31
SCFD1-219ENST00000556413 PYGBP11216 843 aa13.12□□□□□ -0.31
SCFD1-219ENST00000556413 IFNLR1Q8IU57 520 aaPredicted RBP13.11□□□□□ -0.31
SCFD1-219ENST00000556413 OTUD5Q96G74 571 aa13.09□□□□□ -0.31
SCFD1-219ENST00000556413 GSE1Q14687 1217 aa13.07□□□□□ -0.32
SCFD1-219ENST00000556413 POTEFA5A3E0 1075 aa13.04□□□□□ -0.32
SCFD1-219ENST00000556413 POTEJP0CG39 1038 aa13.04□□□□□ -0.32
SCFD1-219ENST00000556413 TRIM35Q9UPQ4 493 aa13.04□□□□□ -0.32
SCFD1-219ENST00000556413 SPOCK2Q92563 424 aa13.02□□□□□ -0.33
SCFD1-219ENST00000556413 TMEM106CQ9BVX2 250 aa13.02□□□□□ -0.33
SCFD1-219ENST00000556413 PCDHB8Q9UN66 801 aa13.01□□□□□ -0.33
SCFD1-219ENST00000556413 COLQQ9Y215 455 aaPredicted RBP12.97□□□□□ -0.33
SCFD1-219ENST00000556413 CHRM1P11229 460 aaPredicted RBP12.96□□□□□ -0.33
SCFD1-219ENST00000556413 IER5LQ5T953 404 aa12.96□□□□□ -0.33
SCFD1-219ENST00000556413 SEC24BO95487 1268 aa12.94□□□□□ -0.34
SCFD1-219ENST00000556413 MAMSTRQ6ZN01 415 aa12.92□□□□□ -0.34
SCFD1-219ENST00000556413 CIZ1Q9ULV3 898 aaPredicted RBP12.92□□□□□ -0.34
SCFD1-219ENST00000556413 ZNF467Q7Z7K2 595 aaPredicted RBP12.91□□□□□ -0.34
SCFD1-219ENST00000556413 SCUBE2Q9NQ36 999 aa12.87□□□□□ -0.35
SCFD1-219ENST00000556413 IRX5P78411 483 aaPredicted RBP12.85□□□□□ -0.35
SCFD1-219ENST00000556413 PLCG2P16885 1265 aa12.82□□□□□ -0.36
SCFD1-219ENST00000556413 PSEN1P49768 467 aa12.81□□□□□ -0.36
SCFD1-219ENST00000556413 OCEL1Q9H607 264 aa12.79□□□□□ -0.36
SCFD1-219ENST00000556413 PDAP1Q13442 181 aaKnown RBP12.77□□□□□ -0.37
SCFD1-219ENST00000556413 TRIM41Q8WV44 630 aa12.74□□□□□ -0.37
SCFD1-219ENST00000556413 GOLGA2Q08379 1002 aa12.73□□□□□ -0.37
SCFD1-219ENST00000556413 MKRN3Q13064 507 aaKnown RBP12.72□□□□□ -0.37
SCFD1-219ENST00000556413 PDCD7Q8N8D1 485 aaKnown RBP12.69□□□□□ -0.38
SCFD1-219ENST00000556413 POTEMA6NI47 508 aa12.65□□□□□ -0.38
SCFD1-219ENST00000556413 LCE2DQ5TA82 110 aaPredicted RBP12.65□□□□□ -0.38
SCFD1-219ENST00000556413 SLAIN1Q8ND83 568 aa12.65□□□□□ -0.38
SCFD1-219ENST00000556413 FAM163AQ96GL9 167 aaPredicted RBP12.65□□□□□ -0.38
SCFD1-219ENST00000556413 CABP2Q9NPB3 220 aa12.65□□□□□ -0.38
SCFD1-219ENST00000556413 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.65□□□□□ -0.382e-10■■□□□ 14
SCFD1-219ENST00000556413 POTEGQ6S5H5 508 aa12.62□□□□□ -0.39
SCFD1-219ENST00000556413 ILDR1Q86SU0 546 aaPredicted RBP12.62□□□□□ -0.39
SCFD1-219ENST00000556413 RNF25Q96BH1 459 aaPredicted RBP12.61□□□□□ -0.39
SCFD1-219ENST00000556413 RIOK3O14730 519 aaKnown RBP12.58□□□□□ -0.4
SCFD1-219ENST00000556413 L3MBTL3Q96JM7 780 aaPredicted RBP12.57□□□□□ -0.4
SCFD1-219ENST00000556413 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.57□□□□□ -0.4
SCFD1-219ENST00000556413 DPY19L2Q6NUT2 758 aa12.55□□□□□ -0.4
SCFD1-219ENST00000556413 EFCAB3Q8N7B9 438 aa12.53□□□□□ -0.4
SCFD1-219ENST00000556413 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.52□□□□□ -0.41
SCFD1-219ENST00000556413 VGFO15240 615 aaPredicted RBP12.52□□□□□ -0.41
SCFD1-219ENST00000556413 ZFP91Q96JP5 570 aaPredicted RBP12.52□□□□□ -0.41
SCFD1-219ENST00000556413 C3orf67Q6ZVT6 689 aa12.51□□□□□ -0.41
SCFD1-219ENST00000556413 ST18O60284 1047 aa12.46□□□□□ -0.41
SCFD1-219ENST00000556413 BOLA1Q9Y3E2 137 aa12.46□□□□□ -0.41
SCFD1-219ENST00000556413 ECM2O94769 699 aaPredicted RBP12.45□□□□□ -0.42
SCFD1-219ENST00000556413 PKD2Q13563 968 aa12.43□□□□□ -0.42
SCFD1-219ENST00000556413 PCDH10Q9P2E7 1040 aa12.42□□□□□ -0.42
SCFD1-219ENST00000556413 G3V3G9 751 aa12.41□□□□□ -0.42
SCFD1-219ENST00000556413 SNPHO15079 494 aa12.41□□□□□ -0.42
SCFD1-219ENST00000556413 SOX12O15370 315 aa12.41□□□□□ -0.42
SCFD1-219ENST00000556413 PLSCR2Q9NRY7 297 aa12.41□□□□□ -0.42
SCFD1-219ENST00000556413 TAOK2Q9UL54 1235 aa12.4□□□□□ -0.42
SCFD1-219ENST00000556413 TMEM121BQ9BXQ6 578 aaPredicted RBP12.39□□□□□ -0.43
SCFD1-219ENST00000556413 BCL11BQ9C0K0 894 aaPredicted RBP12.39□□□□□ -0.43
SCFD1-219ENST00000556413 MS4A4AQ96JQ5 239 aa12.37□□□□□ -0.43
SCFD1-219ENST00000556413 PHF8Q9UPP1 1060 aa12.37□□□□□ -0.43
SCFD1-219ENST00000556413 RGL2O15211 777 aa12.36□□□□□ -0.43
SCFD1-219ENST00000556413 STK24Q9Y6E0 443 aa12.34□□□□□ -0.43
SCFD1-219ENST00000556413 STK25O00506 426 aa12.32□□□□□ -0.44
SCFD1-219ENST00000556413 MICALL2Q8IY33 904 aa12.31□□□□□ -0.44
SCFD1-219ENST00000556413 CDAN1Q8IWY9 1227 aa12.29□□□□□ -0.44
SCFD1-219ENST00000556413 NLRP6P59044 892 aa12.28□□□□□ -0.44
SCFD1-219ENST00000556413 FBXO22Q8NEZ5 403 aa12.28□□□□□ -0.44
SCFD1-219ENST00000556413 MARVELD3Q96A59 401 aa12.28□□□□□ -0.44
SCFD1-219ENST00000556413 MFRPQ9BY79 579 aa12.26□□□□□ -0.45
SCFD1-219ENST00000556413 TMEM92Q6UXU6 159 aa12.25□□□□□ -0.45
SCFD1-219ENST00000556413 HOXB3P14651 431 aaPredicted RBP12.24□□□□□ -0.45
SCFD1-219ENST00000556413 EMP3P54852 163 aa12.19□□□□□ -0.46
SCFD1-219ENST00000556413 DOK7Q18PE1 504 aa12.16□□□□□ -0.46
SCFD1-219ENST00000556413 ZNF710Q8N1W2 664 aa12.15□□□□□ -0.46
SCFD1-219ENST00000556413 POTEB3A0JP26 581 aa12.13□□□□□ -0.47
SCFD1-219ENST00000556413 POTEBQ6S5H4 581 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms