RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 NUBP1P53384 320 aa14.44□□□□□ -0.1
LINC00643-204ENST00000555934 CD44P16070 742 aaKnown RBP14.41□□□□□ -0.1
LINC00643-204ENST00000555934 LHX8Q68G74 356 aa14.38□□□□□ -0.11
LINC00643-204ENST00000555934 CLCN6P51797 869 aa14.36□□□□□ -0.11
LINC00643-204ENST00000555934 RASEFQ8IZ41 740 aa14.36□□□□□ -0.11
LINC00643-204ENST00000555934 POTEIP0CG38 1075 aa14.35□□□□□ -0.11
LINC00643-204ENST00000555934 RGL2O15211 777 aa14.34□□□□□ -0.11
LINC00643-204ENST00000555934 FAM212AQ96EL1 285 aa14.33□□□□□ -0.12
LINC00643-204ENST00000555934 GSE1Q14687 1217 aa14.3□□□□□ -0.12
LINC00643-204ENST00000555934 DCAF8Q5TAQ9 597 aa14.29□□□□□ -0.12
LINC00643-204ENST00000555934 ZNF579Q8NAF0 562 aaKnown RBP14.24□□□□□ -0.13
LINC00643-204ENST00000555934 TSPYL2Q9H2G4 693 aaPredicted RBP14.23□□□□□ -0.13
LINC00643-204ENST00000555934 TRIM41Q8WV44 630 aa14.21□□□□□ -0.13
LINC00643-204ENST00000555934 PLCB2Q00722 1185 aa14.2□□□□□ -0.14
LINC00643-204ENST00000555934 PAK3O75914 559 aaPredicted RBP14.19□□□□□ -0.14
LINC00643-204ENST00000555934 ZRANB1Q9UGI0 708 aa14.16□□□□□ -0.14
LINC00643-204ENST00000555934 CCDC61Q9Y6R9 512 aa14.13□□□□□ -0.15
LINC00643-204ENST00000555934 CHGAP10645 457 aaKnown RBP14.12□□□□□ -0.15
LINC00643-204ENST00000555934 RNF25Q96BH1 459 aaPredicted RBP14.12□□□□□ -0.15
LINC00643-204ENST00000555934 PYGBP11216 843 aa14.11□□□□□ -0.15
LINC00643-204ENST00000555934 CHRM1P11229 460 aaPredicted RBP14.1□□□□□ -0.15
LINC00643-204ENST00000555934 HAP1P54257 671 aaPredicted RBP14.1□□□□□ -0.15
LINC00643-204ENST00000555934 DCBLD2Q96PD2 775 aa14.1□□□□□ -0.15
LINC00643-204ENST00000555934 BBXQ8WY36 941 aaPredicted RBP14.09□□□□□ -0.15
LINC00643-204ENST00000555934 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.07□□□□□ -0.16
LINC00643-204ENST00000555934 GALR2O43603 387 aaPredicted RBP14.05□□□□□ -0.16
LINC00643-204ENST00000555934 CFAP44Q96MT7 982 aa14.04□□□□□ -0.16
LINC00643-204ENST00000555934 PAXIP1Q6ZW49 1069 aaPredicted RBP14.03□□□□□ -0.16
LINC00643-204ENST00000555934 RIOK3O14730 519 aaKnown RBP14.02□□□□□ -0.17
LINC00643-204ENST00000555934 PHF12Q96QT6 1004 aa14□□□□□ -0.17
LINC00643-204ENST00000555934 KIF12Q96FN5 646 aa13.98□□□□□ -0.17
LINC00643-204ENST00000555934 MAP3K13O43283 966 aa13.95□□□□□ -0.18
LINC00643-204ENST00000555934 HS6ST3Q8IZP7 471 aa13.95□□□□□ -0.18
LINC00643-204ENST00000555934 PCDHB13Q9Y5F0 798 aa13.94□□□□□ -0.18
LINC00643-204ENST00000555934 ZNF467Q7Z7K2 595 aaPredicted RBP13.93□□□□□ -0.18
LINC00643-204ENST00000555934 SGIP1Q9BQI5 828 aa13.92□□□□□ -0.18
LINC00643-204ENST00000555934 SPRYD3Q8NCJ5 442 aa13.91□□□□□ -0.18
LINC00643-204ENST00000555934 TAOK2Q9UL54 1235 aa13.91□□□□□ -0.18
LINC00643-204ENST00000555934 STK25O00506 426 aa13.9□□□□□ -0.18
LINC00643-204ENST00000555934 VGFO15240 615 aaPredicted RBP13.9□□□□□ -0.18
LINC00643-204ENST00000555934 PCDHB8Q9UN66 801 aa13.9□□□□□ -0.18
LINC00643-204ENST00000555934 IFNL1Q8IU54 200 aa13.88□□□□□ -0.19
LINC00643-204ENST00000555934 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.87□□□□□ -0.19
LINC00643-204ENST00000555934 ZFP91Q96JP5 570 aaPredicted RBP13.87□□□□□ -0.19
LINC00643-204ENST00000555934 POTEB2H3BUK9 544 aa13.86□□□□□ -0.19
LINC00643-204ENST00000555934 MS4A3Q96HJ5 214 aa13.85□□□□□ -0.19
LINC00643-204ENST00000555934 OTUD5Q96G74 571 aa13.84□□□□□ -0.19
LINC00643-204ENST00000555934 STK24Q9Y6E0 443 aa13.84□□□□□ -0.19
LINC00643-204ENST00000555934 PELP1Q8IZL8 1130 aaKnown RBP13.83□□□□□ -0.2
LINC00643-204ENST00000555934 BCL11BQ9C0K0 894 aaPredicted RBP13.83□□□□□ -0.2
LINC00643-204ENST00000555934 PDAP1Q13442 181 aaKnown RBP13.81□□□□□ -0.2
LINC00643-204ENST00000555934 NKX1-1Q15270 411 aaPredicted RBP13.81□□□□□ -0.2
LINC00643-204ENST00000555934 TSHZ2Q9NRE2 1034 aa13.79□□□□□ -0.2
LINC00643-204ENST00000555934 ASTLQ6HA08 431 aaPredicted RBP13.78□□□□□ -0.2
LINC00643-204ENST00000555934 PSEN1P49768 467 aa13.77□□□□□ -0.21
LINC00643-204ENST00000555934 VSIG10Q8N0Z9 540 aa13.75□□□□□ -0.21
LINC00643-204ENST00000555934 DNAJC5Q9H3Z4 198 aa13.75□□□□□ -0.21
LINC00643-204ENST00000555934 TRPC6Q9Y210 931 aa13.74□□□□□ -0.21
LINC00643-204ENST00000555934 ATMINO43313 823 aaPredicted RBP13.73□□□□□ -0.21
LINC00643-204ENST00000555934 KDM2AQ9Y2K7 1162 aa13.72□□□□□ -0.21
LINC00643-204ENST00000555934 GTPBP6O43824 516 aaPredicted RBP13.69□□□□□ -0.22
LINC00643-204ENST00000555934 TIE1P35590 1138 aa13.67□□□□□ -0.22
LINC00643-204ENST00000555934 SLC39A7Q92504 469 aa13.67□□□□□ -0.22
LINC00643-204ENST00000555934 METRNQ9UJH8 293 aa13.67□□□□□ -0.22
LINC00643-204ENST00000555934 C7P10643 843 aa13.66□□□□□ -0.22
LINC00643-204ENST00000555934 TMEM106CQ9BVX2 250 aa13.66□□□□□ -0.22
LINC00643-204ENST00000555934 POTEJP0CG39 1038 aa13.63□□□□□ -0.23
LINC00643-204ENST00000555934 BMP2KQ9NSY1 1161 aaPredicted RBP13.63□□□□□ -0.23
LINC00643-204ENST00000555934 TTLL13PA6NNM8 815 aa13.62□□□□□ -0.23
LINC00643-204ENST00000555934 CABP2Q9NPB3 220 aa13.61□□□□□ -0.23
LINC00643-204ENST00000555934 ATN1P54259 1190 aaPredicted RBP13.59□□□□□ -0.23
LINC00643-204ENST00000555934 EFCAB3Q8N7B9 438 aa13.55□□□□□ -0.24
LINC00643-204ENST00000555934 GOLGA2Q08379 1002 aa13.54□□□□□ -0.24
LINC00643-204ENST00000555934 POTEMA6NI47 508 aa13.53□□□□□ -0.24
LINC00643-204ENST00000555934 PLSCR2Q9NRY7 297 aa13.53□□□□□ -0.24
LINC00643-204ENST00000555934 RYDENQ9NUL5 291 aaKnown RBP13.53□□□□□ -0.24
LINC00643-204ENST00000555934 TRIM35Q9UPQ4 493 aa13.52□□□□□ -0.25
LINC00643-204ENST00000555934 POTEFA5A3E0 1075 aa13.51□□□□□ -0.25
LINC00643-204ENST00000555934 MAMSTRQ6ZN01 415 aa13.51□□□□□ -0.25
LINC00643-204ENST00000555934 MFRPQ9BY79 579 aa13.49□□□□□ -0.25
LINC00643-204ENST00000555934 SOX12O15370 315 aa13.48□□□□□ -0.25
LINC00643-204ENST00000555934 MKRN3Q13064 507 aaKnown RBP13.48□□□□□ -0.25
LINC00643-204ENST00000555934 POTEGQ6S5H5 508 aa13.48□□□□□ -0.25
LINC00643-204ENST00000555934 BCANQ96GW7 911 aa13.47□□□□□ -0.25
LINC00643-204ENST00000555934 PHF8Q9UPP1 1060 aa13.44□□□□□ -0.26
LINC00643-204ENST00000555934 NLRP6P59044 892 aa13.43□□□□□ -0.26
LINC00643-204ENST00000555934 FBXO22Q8NEZ5 403 aa13.42□□□□□ -0.26
LINC00643-204ENST00000555934 LCE2DQ5TA82 110 aaPredicted RBP13.41□□□□□ -0.26
LINC00643-204ENST00000555934 IER5LQ5T953 404 aa13.4□□□□□ -0.26
LINC00643-204ENST00000555934 SCUBE2Q9NQ36 999 aa13.4□□□□□ -0.26
LINC00643-204ENST00000555934 PCDH10Q9P2E7 1040 aa13.39□□□□□ -0.27
LINC00643-204ENST00000555934 PPP1R37O75864 691 aa13.38□□□□□ -0.27
LINC00643-204ENST00000555934 CADPS2Q86UW7 1296 aa13.37□□□□□ -0.27
LINC00643-204ENST00000555934 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.37□□□□□ -0.27
LINC00643-204ENST00000555934 ILDR1Q86SU0 546 aaPredicted RBP13.36□□□□□ -0.27
LINC00643-204ENST00000555934 MS4A4AQ96JQ5 239 aa13.36□□□□□ -0.27
LINC00643-204ENST00000555934 IRX5P78411 483 aaPredicted RBP13.34□□□□□ -0.27
LINC00643-204ENST00000555934 COLQQ9Y215 455 aaPredicted RBP13.34□□□□□ -0.27
LINC00643-204ENST00000555934 PDCD7Q8N8D1 485 aaKnown RBP13.31□□□□□ -0.28
LINC00643-204ENST00000555934 OCEL1Q9H607 264 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms